FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1539, 538 aa
  1>>>pF1KA1539 538 - 538 aa - 538 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.6616+/-0.000908; mu= 1.6272+/- 0.055
 mean_var=318.5178+/-64.763, 0's: 0 Z-trim(116.4): 36  B-trim: 174 in 1/53
 Lambda= 0.071863
 statistics sampled from 17004 (17033) to 17004 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.523), width:  16
 Scan time:  4.200

The best scores are:                                      opt bits E(32554)
CCDS6578.1 FAM214B gene_id:80256|Hs108|chr9        ( 538) 3754 402.6 5.8e-112
CCDS45263.1 FAM214A gene_id:56204|Hs108|chr15      (1076)  836 100.4 1.1e-20
CCDS66773.1 FAM214A gene_id:56204|Hs108|chr15      (1083)  836 100.4 1.1e-20


>>CCDS6578.1 FAM214B gene_id:80256|Hs108|chr9             (538 aa)
 initn: 3754 init1: 3754 opt: 3754  Z-score: 2123.5  bits: 402.6 E(32554): 5.8e-112
Smith-Waterman score: 3754; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)

               10        20        30        40        50        60
pF1KA1 MRHVQAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MRHVQAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 EPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 RGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 RGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 GQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 GQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 KRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 KRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 TDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLLGNFEESLLRGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 TDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLLGNFEESLLRGR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 FAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIVDLNPLGRKGYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 FAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIVDLNPLGRKGYS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 VPKVGTVQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVGEEGNANPTHRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 VPKVGTVQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVGEEGNANPTHRL
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KA1 LCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYELQAVTEAPHNPRYSPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYELQAVTEAPHNPRYSPLP
              490       500       510       520       530        

>>CCDS45263.1 FAM214A gene_id:56204|Hs108|chr15           (1076 aa)
 initn: 847 init1: 570 opt: 836  Z-score: 484.8  bits: 100.4 E(32554): 1.1e-20
Smith-Waterman score: 836; 54.2% identity (76.9% similar) in 225 aa overlap (320-536:850-1074)

     290       300       310       320       330       340         
pF1KA1 LPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLL
                                     :  ...  : .   :  :    : .: .::
CCDS45 PVPQRKTQSGCFDLDSSLLHLKSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLL
     820       830       840       850       860       870         

     350       360       370       380       390       400         
pF1KA1 GNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIV
       ::::::.:  :: : : ..:::::.::::..:: :.:::: :.:..::..:::.:..:..
CCDS45 GNFEESVLNYRFDPLGIVDGFTAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVI
     880       890       900       910       920       930         

     410       420       430       440       450       460         
pF1KA1 DLNPLGRKGYSVPKVGTVQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVG
        :. ::..:: ::  ::.::::::::.::::::.: .:. :::: :.::::.: : ::: 
CCDS45 TLESLGKRGYRVPPSGTIQVTLFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVK
     940       950       960       970       980       990         

     470               480       490       500       510       520 
pF1KA1 EE-----GNANPTH---RLLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYE
       .:     .. :  :   ::: ::.::::.::.::.. :: :.::::::.:.:.:.:  ::
CCDS45 QEVKRSVNKENIRHTEERLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYE
    1000      1010      1020      1030      1040      1050         

             530        
pF1KA1 LQAVTEAPHNPRYSPLP
       :.. ::.: ::..::  
CCDS45 LKSYTESPTNPQFSPRC
    1060      1070      

>>CCDS66773.1 FAM214A gene_id:56204|Hs108|chr15           (1083 aa)
 initn: 847 init1: 570 opt: 836  Z-score: 484.7  bits: 100.4 E(32554): 1.1e-20
Smith-Waterman score: 836; 54.2% identity (76.9% similar) in 225 aa overlap (320-536:857-1081)

     290       300       310       320       330       340         
pF1KA1 LPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLL
                                     :  ...  : .   :  :    : .: .::
CCDS66 PVPQRKTQSGCFDLDSSLLHLKSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLL
        830       840       850       860       870       880      

     350       360       370       380       390       400         
pF1KA1 GNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIV
       ::::::.:  :: : : ..:::::.::::..:: :.:::: :.:..::..:::.:..:..
CCDS66 GNFEESVLNYRFDPLGIVDGFTAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVI
        890       900       910       920       930       940      

     410       420       430       440       450       460         
pF1KA1 DLNPLGRKGYSVPKVGTVQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVG
        :. ::..:: ::  ::.::::::::.::::::.: .:. :::: :.::::.: : ::: 
CCDS66 TLESLGKRGYRVPPSGTIQVTLFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVK
        950       960       970       980       990      1000      

     470               480       490       500       510       520 
pF1KA1 EE-----GNANPTH---RLLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYE
       .:     .. :  :   ::: ::.::::.::.::.. :: :.::::::.:.:.:.:  ::
CCDS66 QEVKRSVNKENIRHTEERLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYE
       1010      1020      1030      1040      1050      1060      

             530        
pF1KA1 LQAVTEAPHNPRYSPLP
       :.. ::.: ::..::  
CCDS66 LKSYTESPTNPQFSPRC
       1070      1080   




538 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:37:52 2016 done: Fri Nov  4 01:37:53 2016
 Total Scan time:  4.200 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]