Result of FASTA (ccds) for
pF1KA1526
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1526, 907 aa
1>>>pF1KA1526 907 - 907 aa - 907 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.1644+/-0.00116; mu= -5.2820+/- 0.069
mean_var=336.0389+/-68.521, 0's: 0 Z-trim(113.2): 46 B-trim: 169 in 1/51
Lambda= 0.069965
statistics sampled from 13861 (13890) to 13861 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.427), width: 16
Scan time: 5.360
The best scores are: opt bits E(32554)
CCDS6806.1 WHRN gene_id:25861|Hs108|chr9 ( 907) 5935 613.6 5.1e-175
CCDS43870.1 WHRN gene_id:25861|Hs108|chr9 ( 524) 3441 361.7 2e-99
>>CCDS6806.1 WHRN gene_id:25861|Hs108|chr9 (907 aa)
initn: 5935 init1: 5935 opt: 5935 Z-score: 3255.7 bits: 613.6 E(32554): 5.1e-175
Smith-Waterman score: 5935; 100.0% identity (100.0% similar) in 907 aa overlap (1-907:1-907)
10 20 30 40 50 60
pF1KA1 MNAPLDGLSVSSSSTGSLGSAAGAGGGGGAGLRLLSANVRQLHQALTALLSEAEREQFTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MNAPLDGLSVSSSSTGSLGSAAGAGGGGGAGLRLLSANVRQLHQALTALLSEAEREQFTH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 CLNAYHARRNVFDLVRTLRVLLDSPVKRRLLPMLRLVIPRSDQLLFDQYTAEGLYLPATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 CLNAYHARRNVFDLVRTLRVLLDSPVKRRLLPMLRLVIPRSDQLLFDQYTAEGLYLPATT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 PYRQPAWGGPDSAGPGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PYRQPAWGGPDSAGPGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 GLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRIPGGYVTNHIYTWVDPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 GLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRIPGGYVTNHIYTWVDPQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 GRSISPPSGLPQPHGGALRQQEGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 GRSISPPSGLPQPHGGALRQQEGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 GLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 GLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 RLPHARTTVDETKWIASSRIRETMANSAGFLGDLTTEGINKPGFYKGPAGSQVTLSSLGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 RLPHARTTVDETKWIASSRIRETMANSAGFLGDLTTEGINKPGFYKGPAGSQVTLSSLGN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 QTRVLLEEQARHLLNEQEHATMAYYLDEYRGGSVSVEALVMALFKLLNTHAKFSLLSEVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 QTRVLLEEQARHLLNEQEHATMAYYLDEYRGGSVSVEALVMALFKLLNTHAKFSLLSEVR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 GTISPQDLERFDHLVLRREIESMKARQPPGPGAGDTYSMVSYSDTGSSTGSHGTSTTVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 GTISPQDLERFDHLVLRREIESMKARQPPGPGAGDTYSMVSYSDTGSSTGSHGTSTTVSS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 ARNTLDLEETGEAVQGNINALPDVSVDDVRSTSQGLSSFKPLPRPPPLAQGNDLPLGQPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 ARNTLDLEETGEAVQGNINALPDVSVDDVRSTSQGLSSFKPLPRPPPLAQGNDLPLGQPR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 KLGREDLQPPSSMPSCSGTVFSAPQNRSPPAGTAPTPGTSSAQDLPSSPIYASVSPANPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 KLGREDLQPPSSMPSCSGTVFSAPQNRSPPAGTAPTPGTSSAQDLPSSPIYASVSPANPS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 SKRPLDAHLALVNQHPIGPFPRVQSPPHLKSPSAEATVAGGCLLPPSPSGHPDQTGTNQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SKRPLDAHLALVNQHPIGPFPRVQSPPHLKSPSAEATVAGGCLLPPSPSGHPDQTGTNQH
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 FVMVEVHRPDSEPDVNEVRALPQTRTASTLSQLSDSGQTLSEDSGVDAGEAEASAPGRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 FVMVEVHRPDSEPDVNEVRALPQTRTASTLSQLSDSGQTLSEDSGVDAGEAEASAPGRGR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 QSVSTKSRSSKELPRNERPTDGANKPPGLLEPTSTLVRVKKSAATLGIAIEGGANTRQPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 QSVSTKSRSSKELPRNERPTDGANKPPGLLEPTSTLVRVKKSAATLGIAIEGGANTRQPL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 PRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLV
850 860 870 880 890 900
pF1KA1 TEFNVML
:::::::
CCDS68 TEFNVML
>>CCDS43870.1 WHRN gene_id:25861|Hs108|chr9 (524 aa)
initn: 3441 init1: 3441 opt: 3441 Z-score: 1898.5 bits: 361.7 E(32554): 2e-99
Smith-Waterman score: 3441; 100.0% identity (100.0% similar) in 524 aa overlap (384-907:1-524)
360 370 380 390 400 410
pF1KA1 LTVKDVGRLPHARTTVDETKWIASSRIRETMANSAGFLGDLTTEGINKPGFYKGPAGSQV
::::::::::::::::::::::::::::::
CCDS43 MANSAGFLGDLTTEGINKPGFYKGPAGSQV
10 20 30
420 430 440 450 460 470
pF1KA1 TLSSLGNQTRVLLEEQARHLLNEQEHATMAYYLDEYRGGSVSVEALVMALFKLLNTHAKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TLSSLGNQTRVLLEEQARHLLNEQEHATMAYYLDEYRGGSVSVEALVMALFKLLNTHAKF
40 50 60 70 80 90
480 490 500 510 520 530
pF1KA1 SLLSEVRGTISPQDLERFDHLVLRREIESMKARQPPGPGAGDTYSMVSYSDTGSSTGSHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SLLSEVRGTISPQDLERFDHLVLRREIESMKARQPPGPGAGDTYSMVSYSDTGSSTGSHG
100 110 120 130 140 150
540 550 560 570 580 590
pF1KA1 TSTTVSSARNTLDLEETGEAVQGNINALPDVSVDDVRSTSQGLSSFKPLPRPPPLAQGND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TSTTVSSARNTLDLEETGEAVQGNINALPDVSVDDVRSTSQGLSSFKPLPRPPPLAQGND
160 170 180 190 200 210
600 610 620 630 640 650
pF1KA1 LPLGQPRKLGREDLQPPSSMPSCSGTVFSAPQNRSPPAGTAPTPGTSSAQDLPSSPIYAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LPLGQPRKLGREDLQPPSSMPSCSGTVFSAPQNRSPPAGTAPTPGTSSAQDLPSSPIYAS
220 230 240 250 260 270
660 670 680 690 700 710
pF1KA1 VSPANPSSKRPLDAHLALVNQHPIGPFPRVQSPPHLKSPSAEATVAGGCLLPPSPSGHPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VSPANPSSKRPLDAHLALVNQHPIGPFPRVQSPPHLKSPSAEATVAGGCLLPPSPSGHPD
280 290 300 310 320 330
720 730 740 750 760 770
pF1KA1 QTGTNQHFVMVEVHRPDSEPDVNEVRALPQTRTASTLSQLSDSGQTLSEDSGVDAGEAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QTGTNQHFVMVEVHRPDSEPDVNEVRALPQTRTASTLSQLSDSGQTLSEDSGVDAGEAEA
340 350 360 370 380 390
780 790 800 810 820 830
pF1KA1 SAPGRGRQSVSTKSRSSKELPRNERPTDGANKPPGLLEPTSTLVRVKKSAATLGIAIEGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SAPGRGRQSVSTKSRSSKELPRNERPTDGANKPPGLLEPTSTLVRVKKSAATLGIAIEGG
400 410 420 430 440 450
840 850 860 870 880 890
pF1KA1 ANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDR
460 470 480 490 500 510
900
pF1KA1 DYIDFLVTEFNVML
::::::::::::::
CCDS43 DYIDFLVTEFNVML
520
907 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:50:59 2016 done: Sat Nov 5 06:51:00 2016
Total Scan time: 5.360 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]