FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1475, 973 aa
  1>>>pF1KA1475 973 - 973 aa - 973 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5274+/-0.000848; mu= 20.9919+/- 0.051
 mean_var=85.2179+/-17.406, 0's: 0 Z-trim(108.2): 19  B-trim: 291 in 1/51
 Lambda= 0.138934
 statistics sampled from 10071 (10080) to 10071 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.31), width:  16
 Scan time:  4.570

The best scores are:                                      opt bits E(32554)
CCDS10069.1 VPS18 gene_id:57617|Hs108|chr15        ( 973) 6555 1324.4       0


>>CCDS10069.1 VPS18 gene_id:57617|Hs108|chr15             (973 aa)
 initn: 6555 init1: 6555 opt: 6555  Z-score: 7096.0  bits: 1324.4 E(32554):    0
Smith-Waterman score: 6555; 100.0% identity (100.0% similar) in 973 aa overlap (1-973:1-973)

               10        20        30        40        50        60
pF1KA1 MASILDEYENSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MASILDEYENSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 VVSSNQLCMSLGKDTLLRIDLGKANEPNHVELGRKDDAKVHKMFLDHTGSHLLIALSSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VVSSNQLCMSLGKDTLLRIDLGKANEPNHVELGRKDDAKVHKMFLDHTGSHLLIALSSTE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 VLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGHIFEAELSASEGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGHIFEAELSASEGG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRSFVIATTRQRLFQFIGRAAEGAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRSFVIATTRQRLFQFIGRAAEGAE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 AQGFSGLFAAYTDHPPPFREFPSNLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGALDCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AQGFSGLFAAYTDHPPPFREFPSNLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGALDCG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 RPDSLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RPDSLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 EKFGPLKHMVKDSSTGQLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EKFGPLKHMVKDSSTGQLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 CLDTVLAREADFCFRQRRYLESARCYALTQSYFEEIALKFLEARQEEALAEFLQRKLASL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CLDTVLAREADFCFRQRRYLESARCYALTQSYFEEIALKFLEARQEEALAEFLQRKLASL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 KPAERTQATLLTTWLTELYLSRLGALQGDPEALTLYRETKECFRTFLSSPRHKEWLFASR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KPAERTQATLLTTWLTELYLSRLGALQGDPEALTLYRETKECFRTFLSSPRHKEWLFASR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 ILIRHIPRQLVDAWIEMGSRLDARQLIPALVNYSQGGEVQQVSQAIRYMEFCVNVLGETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ILIRHIPRQLVDAWIEMGSRLDARQLIPALVNYSQGGEVQQVSQAIRYMEFCVNVLGETE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 QAIHNYLLSLYARGRPDSLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QAIHNYLLSLYARGRPDSLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 ELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQEL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 RGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQR
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 KLGAAPPPAKGSARAKEAEGGAATAGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KLGAAPPPAKGSARAKEAEGGAATAGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI
              910       920       930       940       950       960

              970   
pF1KA1 DPQRYEEEQLSWL
       :::::::::::::
CCDS10 DPQRYEEEQLSWL
              970   




973 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:34:18 2016 done: Fri Nov  4 01:34:18 2016
 Total Scan time:  4.570 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]