Result of FASTA (ccds) for
pF1KA1464
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1464, 620 aa
1>>>pF1KA1464 620 - 620 aa - 620 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.4368+/-0.000875; mu= 0.9762+/- 0.053
mean_var=210.6540+/-42.453, 0's: 0 Z-trim(113.9): 23 B-trim: 11 in 1/53
Lambda= 0.088367
statistics sampled from 14447 (14460) to 14447 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.444), width: 16
Scan time: 4.260
The best scores are: opt bits E(32554)
CCDS32469.1 RANBP10 gene_id:57610|Hs108|chr16 ( 620) 4229 551.8 9.5e-157
CCDS4529.1 RANBP9 gene_id:10048|Hs108|chr6 ( 729) 2815 371.6 2e-102
CCDS81999.1 RANBP10 gene_id:57610|Hs108|chr16 ( 594) 1748 235.5 1.5e-61
>>CCDS32469.1 RANBP10 gene_id:57610|Hs108|chr16 (620 aa)
initn: 4229 init1: 4229 opt: 4229 Z-score: 2927.6 bits: 551.8 E(32554): 9.5e-157
Smith-Waterman score: 4229; 100.0% identity (100.0% similar) in 620 aa overlap (1-620:1-620)
10 20 30 40 50 60
pF1KA1 MAAATADPGAGNPQPGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQQETPLPRSWSPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAAATADPGAGNPQPGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQQETPLPRSWSPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 DKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 GLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 FYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 VHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 LVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 SYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 SSPSSVNYSESNSTDSTKSQHHSSTSNQETSDSEMEMEAEHYPNGVLGSMSTRIVNGAYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSPSSVNYSESNSTDSTKSQHHSSTSNQETSDSEMEMEAEHYPNGVLGSMSTRIVNGAYK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 HEDLQTDESSMDDRHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HEDLQTDESSMDDRHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 DAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLR
550 560 570 580 590 600
610 620
pF1KA1 LMARAGLGSCSFARVDDYLH
::::::::::::::::::::
CCDS32 LMARAGLGSCSFARVDDYLH
610 620
>>CCDS4529.1 RANBP9 gene_id:10048|Hs108|chr6 (729 aa)
initn: 2826 init1: 2002 opt: 2815 Z-score: 1952.3 bits: 371.6 E(32554): 2e-102
Smith-Waterman score: 2835; 66.3% identity (81.2% similar) in 658 aa overlap (3-620:93-729)
10 20 30
pF1KA1 MAAATADPGAGNPQP-GDSSGGGAGGGLPSPG
:..: :..: : : : ..: : .:: :.:.
CCDS45 AAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPTPA
70 80 90 100 110 120
40 50 60 70
pF1KA1 ---------------------EQELSRRLQRLYPAVNQQETPLPRSWSPKDKYNYIGLSQ
:.::.:::.::::::..::::::::::::::..::::::
CCDS45 LVAGSSAAAPFPHGDSALNEQEKELQRRLKRLYPAVDEQETPLPRSWSPKDKFSYIGLSQ
130 140 150 160 170 180
80 90 100 110 120 130
pF1KA1 GNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMN
.:::::::::::. ::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMN
190 200 210 220 230 240
140 150 160 170 180 190
pF1KA1 RLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLG
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS45 RLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLG
250 260 270 280 290 300
200 210 220 230 240 250
pF1KA1 IAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARL
::::::: :::::::::::::.:::::::.::.:::::::::::.:.:. . :::. :
CCDS45 IAFTDLPPNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDRE
310 320 330 340 350 360
260 270 280 290 300 310
pF1KA1 GEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEA
::::...:.::::::::::::::: :::: :. . :: :::::::.:::::: ::.:::
CCDS45 GEWQTMIQKMVSSYLVHHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEA
370 380 390 400 410 420
320 330 340 350 360
pF1KA1 IETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYP------G
:::::..::.:::.:::::: :: :::.::::::::::: :..:::::::::: .
CCDS45 IETTQQLYPSLLERNPNLLFTLKVRQFIEMVNGTDSEVRCLGGRSPKSQDSYPVSPRPFS
430 440 450 460 470 480
370 380 390 400 410
pF1KA1 SPSLSPRHGPSSSHMHN--TGADSP-------SCSNGVASTKSKQNHSKYPAPSSSSSSS
:::.:: :: ..:: .: : :::::: :.:..:.. .
CCDS45 SPSMSPSHG---MNIHNLASGKGSTAHFSGFESCSNGVISNKAHQSYCH-----------
490 500 510 520
420 430 440 450 460 470
pF1KA1 SSSSSSSPSSVNYSESNSTDSTKSQHHSSTSNQETSDSEMEMEAEHYPNGVLGSMSTRIV
:.. . :..: : :: . ..::. :. ::. ...::..:: ::: . :. ..
CCDS45 --SNKHQSSNLNVPELNSINMSRSQQ----VNNFTSN-DVDMETDHYSNGVGETSSNGFL
530 540 550 560 570 580
480 490 500 510 520 530
pF1KA1 NGAYKHEDLQTD---ESSMDDRHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKN
::. ::. . : : .:. . :::::::.::: ::.: :::::::.:::: :. :::
CCDS45 NGSSKHDHEMEDCDTEMEVDSSQLRRQLCGGSQAAIERMIHFGRELQAMSEQLRRDCGKN
590 600 610 620 630 640
540 550 560 570 580 590
pF1KA1 LAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLAL
:. .::.::::::::::::. :::.:::::::::::.::::::::..:::::::: ::.
CCDS45 TANKKMLKDAFSLLAYSDPWNSPVGNQLDPIQREPVCSALNSAILETHNLPKQPPLALAM
650 660 670 680 690 700
600 610 620
pF1KA1 GQASECLRLMARAGLGSCSFARVDDYLH
:::..:: ::::.:.:::.:: :.::::
CCDS45 GQATQCLGLMARSGIGSCAFATVEDYLH
710 720
>>CCDS81999.1 RANBP10 gene_id:57610|Hs108|chr16 (594 aa)
initn: 2971 init1: 1746 opt: 1748 Z-score: 1218.5 bits: 235.5 E(32554): 1.5e-61
Smith-Waterman score: 3609; 86.8% identity (86.8% similar) in 650 aa overlap (1-620:1-594)
10 20 30 40 50 60
pF1KA1 MAAATADPGAGNPQPGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQQETPLPRSWSPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MAAATADPGAGNPQPGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQQETPLPRSWSPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 DKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 GLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTC
::::::::::::::
CCDS81 GLSAQGVNMNRLPG----------------------------------------------
130
190 200 210 220 230 240
pF1KA1 FYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGT
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ----------IAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGT
140 150 160 170 180
250 260 270 280 290 300
pF1KA1 VHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQK
190 200 210 220 230 240
310 320 330 340 350 360
pF1KA1 LVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQD
250 260 270 280 290 300
370 380 390 400 410 420
pF1KA1 SYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSS
310 320 330 340 350 360
430 440 450
pF1KA1 SSPSSVNYSESNSTDSTKSQHHSSTSNQETS-----------------------------
:::::::::::::::::::::::::::::::
CCDS81 SSPSSVNYSESNSTDSTKSQHHSSTSNQETSNPWLQLERRPNQAAPTTPPGPTPTSTPPH
370 380 390 400 410 420
460 470 480 490 500 510
pF1KA1 -DSEMEMEAEHYPNGVLGSMSTRIVNGAYKHEDLQTDESSMDDRHPRRQLCGGNQAATER
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SDSEMEMEAEHYPNGVLGSMSTRIVNGAYKHEDLQTDESSMDDRHPRRQLCGGNQAATER
430 440 450 460 470 480
520 530 540 550 560 570
pF1KA1 IILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 IILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCA
490 500 510 520 530 540
580 590 600 610 620
pF1KA1 ALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFARVDDYLH
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFARVDDYLH
550 560 570 580 590
620 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 21:13:13 2016 done: Wed Nov 2 21:13:14 2016
Total Scan time: 4.260 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]