FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1449, 677 aa
  1>>>pF1KA1449 677 - 677 aa - 677 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8152+/-0.00122; mu= 5.7929+/- 0.071
 mean_var=137.4226+/-29.650, 0's: 0 Z-trim(104.1): 181  B-trim: 5 in 1/48
 Lambda= 0.109407
 statistics sampled from 7509 (7717) to 7509 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.237), width:  16
 Scan time:  3.510

The best scores are:                                      opt bits E(32554)
CCDS33738.1 WDR48 gene_id:57599|Hs108|chr3         ( 677) 4563 733.0 3.3e-211
CCDS5925.2 WDR86 gene_id:349136|Hs108|chr7         ( 376)  341 66.5 8.2e-11


>>CCDS33738.1 WDR48 gene_id:57599|Hs108|chr3              (677 aa)
 initn: 4563 init1: 4563 opt: 4563  Z-score: 3905.3  bits: 733.0 E(32554): 3.3e-211
Smith-Waterman score: 4563; 100.0% identity (100.0% similar) in 677 aa overlap (1-677:1-677)

               10        20        30        40        50        60
pF1KA1 MAAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 QHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 KALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 TIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 QQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 ELDRSADPPPAIWVATTKSTVNKWTLKGIHNFRASGDYDNDCTNPITPLCTQPDQVIKGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ELDRSADPPPAIWVATTKSTVNKWTLKGIHNFRASGDYDNDCTNPITPLCTQPDQVIKGG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 ASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKVDFEDEIKKRFKMVYVPNWF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKVDFEDEIKKRFKMVYVPNWF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 SVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYWPRTHVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYWPRTHVN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 PMDEEENEVNHVNGEQENRVQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PMDEEENEVNHVNGEQENRVQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESM
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 LLNETVPQWVIDITVDKNMPKFNKIPFYLQPHASSGAKTLKKDRLSASDMLQVRKVMEHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LLNETVPQWVIDITVDKNMPKFNKIPFYLQPHASSGAKTLKKDRLSASDMLQVRKVMEHV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 YEKIINLDNESQTTSSSNNEKPGEQEKEEDIAVLAEEKIELLCQDQVLDPNMDLRTVKHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YEKIINLDNESQTTSSSNNEKPGEQEKEEDIAVLAEEKIELLCQDQVLDPNMDLRTVKHF
              610       620       630       640       650       660

              670       
pF1KA1 IWKSGGDLTLHYRQKST
       :::::::::::::::::
CCDS33 IWKSGGDLTLHYRQKST
              670       

>>CCDS5925.2 WDR86 gene_id:349136|Hs108|chr7              (376 aa)
 initn: 172 init1: 172 opt: 341  Z-score: 307.6  bits: 66.5 E(32554): 8.2e-11
Smith-Waterman score: 341; 27.7% identity (59.0% similar) in 256 aa overlap (29-278:14-259)

               10        20        30        40        50        60
pF1KA1 MAAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVN
                                   .:.:.: :.:.:  .::.:...:.  :.::. 
CCDS59                MGGGGSALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTA
                              10        20        30        40     

               70        80         90       100       110         
pF1KA1 QHKQDPYIASMEHHTDWVNDIVLC-CNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDY
       . .     : .. : ..:.   .:  . .. .. :.: :.. :..  : :... : : . 
CCDS59 DGQ---CCALLQGHESYVT---FCQLEDEAAFTCSADCTIRRWDVLTGQCLQVYRGHTSI
             50        60           70        80        90         

     120       130       140          150       160         170    
pF1KA1 VKALAYAKDKELVASAGLDRQIFLWDVNT---LTALTASNNTVTTSSLSGNKD--SIYSL
       :. .  :... .  :.. ::   .:.:.       . .  : : : . :.  :  :    
CCDS59 VNRILVANNQLF--SSSYDRTARVWSVDKGQMSREFRGHRNCVLTLAYSAPWDLPSTPCA
     100       110         120       130       140       150       

          180       190       200       210       220       230    
pF1KA1 AMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTI
            : ..:.:::. . .::.  .    . :.:::  :  :.:.  :   ..::.:.::
CCDS59 EEAAAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATI
       160       170       180       190       200       210       

          240       250       260       270       280       290    
pF1KA1 RLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEK
       : :.. . . . ..: :  .:  :.. . .  ::::. :: . :                
CCDS59 RAWDILSGEQLRVFREHRGSVICLELVNRL--VYSGSADRTVKCWLADTGECVRTFTAHR
       220       230       240         250       260       270     

          300       310       320       330       340       350    
pF1KA1 APVLKMELDRSADPPPAIWVATTKSTVNKWTLKGIHNFRASGDYDNDCTNPITPLCTQPD
                                                                   
CCDS59 RNVSALKYHAGTLFTGSGDACARAFDAQSGELRRVFRGHTFIINCIQVHGQVLYTASHDG
         280       290       300       310       320       330     




677 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:05:47 2016 done: Thu Nov  3 11:05:47 2016
 Total Scan time:  3.510 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]