Result of FASTA (omim) for
pF1KA1435
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1435, 410 aa
1>>>pF1KA1435 410 - 410 aa - 410 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8229+/-0.000534; mu= 10.9172+/- 0.032
mean_var=212.0762+/-46.713, 0's: 0 Z-trim(112.9): 198 B-trim: 733 in 2/51
Lambda= 0.088070
statistics sampled from 21739 (21976) to 21739 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.258), width: 16
Scan time: 7.410
The best scores are: opt bits E(85289)
NP_443182 (OMIM: 610418) WD repeat and FYVE domain ( 400) 1925 258.1 2.8e-68
XP_011533216 (OMIM: 610418) PREDICTED: WD repeat a ( 398) 1868 250.9 4.2e-66
XP_011533217 (OMIM: 610418) PREDICTED: WD repeat a ( 311) 1505 204.6 2.8e-52
XP_016875875 (OMIM: 610418) PREDICTED: WD repeat a ( 311) 1505 204.6 2.8e-52
NP_006089 (OMIM: 176981) receptor of activated pro ( 317) 249 45.0 0.00031
XP_016878353 (OMIM: 602703,616212) PREDICTED: kata ( 655) 228 42.8 0.003
NP_005877 (OMIM: 602703,616212) katanin p80 WD40 r ( 655) 228 42.8 0.003
XP_016878352 (OMIM: 602703,616212) PREDICTED: kata ( 655) 228 42.8 0.003
XP_006721186 (OMIM: 602703,616212) PREDICTED: kata ( 658) 228 42.8 0.003
XP_005255829 (OMIM: 602703,616212) PREDICTED: kata ( 672) 228 42.8 0.0031
XP_016878351 (OMIM: 602703,616212) PREDICTED: kata ( 672) 228 42.8 0.0031
XP_016878350 (OMIM: 602703,616212) PREDICTED: kata ( 672) 228 42.8 0.0031
XP_006721185 (OMIM: 602703,616212) PREDICTED: kata ( 675) 228 42.8 0.0031
XP_011521112 (OMIM: 602703,616212) PREDICTED: kata ( 675) 228 42.8 0.0031
XP_016878349 (OMIM: 602703,616212) PREDICTED: kata ( 675) 228 42.8 0.0031
XP_006721184 (OMIM: 602703,616212) PREDICTED: kata ( 675) 228 42.8 0.0031
NP_001186706 (OMIM: 614784,615973) POC1 centriolar ( 436) 223 41.9 0.0037
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478) 223 42.0 0.0039
NP_008882 (OMIM: 601787) transcription initiation ( 800) 223 42.3 0.0053
XP_016861593 (OMIM: 614783,614813) PREDICTED: POC1 ( 321) 215 40.7 0.0062
NP_001155052 (OMIM: 614783,614813) POC1 centriolar ( 359) 215 40.8 0.0066
NP_001155053 (OMIM: 614783,614813) POC1 centriolar ( 369) 215 40.8 0.0067
NP_056241 (OMIM: 614783,614813) POC1 centriolar pr ( 407) 215 40.9 0.0071
XP_016880786 (OMIM: 604375) PREDICTED: hepatocyte ( 768) 218 41.6 0.008
XP_011523765 (OMIM: 604375) PREDICTED: hepatocyte ( 777) 218 41.6 0.0081
NP_004703 (OMIM: 604375) hepatocyte growth factor- ( 777) 218 41.6 0.0081
>>NP_443182 (OMIM: 610418) WD repeat and FYVE domain-con (400 aa)
initn: 1925 init1: 1925 opt: 1925 Z-score: 1346.9 bits: 258.1 E(85289): 2.8e-68
Smith-Waterman score: 1925; 61.9% identity (88.2% similar) in 399 aa overlap (1-399:1-399)
10 20 30 40 50 60
pF1KA1 MAAEIHSRPQSSRPVLLSKIEGHQDAVTAALLIPKEDGVITASEDRTIRVWLKRDSGQYW
:::::. .: . .:.::...:: :..:. :...:::.:::..:::::.::::::::::::
NP_443 MAAEIQPKPLTRKPILLQRMEGSQEVVNMAVIVPKEEGVISVSEDRTVRVWLKRDSGQYW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 PSIYHTMASPCSAMAYHHDSRRIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAI
::.::.: :::: :... ..::. .: :::.. :: .:::.:::. .:.: :::.::. :
NP_443 PSVYHAMPSPCSCMSFNPETRRLSIGLDNGTISEFILSEDYNKMTPVKNYQAHQSRVTMI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 IFSLATEWVISTGHDKCVSWMCTRSGNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQIT
.: : :::.:::.:: .: :..::. :: . .. :: ::.: .:...:.::.:::.:
NP_443 LFVLELEWVLSTGQDKQFAWHCSESGQRLGGYRTSAVASGLQFDVETRHVFIGDHSGQVT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 LLKLEQNTCSVITTLKGHEGSVACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQG
.:::::..:...::..:: :.:. : :::.::.::::.::.:.:::::::::: .. :::
NP_443 ILKLEQENCTLVTTFRGHTGGVTALCWDPVQRVLFSGSSDHSVIMWDIGGRKGTAIELQG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 HHDKVQSLCYLQLTRQLVSCSSDGGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQ
:.:.::.: : : ::::.::..::::.:::::: :.:.:.::.:::::::.::::::.::
NP_443 HNDRVQALSYAQHTRQLISCGGDGGIVVWNMDVERQETPEWLDSDSCQKCDQPFFWNFKQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 MWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDEDRTSLA
:::.: .:::::::::::.:::::::::::: :.:::::.:::::::...: ::.:. :
NP_443 MWDSKKIGLRQHHCRKCGKAVCGKCSSKRSSIPLMGFEFEVRVCDSCHEAITDEERAPTA
310 320 330 340 350 360
370 380 390 400 410
pF1KA1 TFHEGKHNISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH
:::..:::: :. .: .:: ..: :::...:.:::::::
NP_443 TFHDSKHNIVHVHFDATRGWLLTSGTDKVIKLWDMTPVVS
370 380 390 400
>>XP_011533216 (OMIM: 610418) PREDICTED: WD repeat and F (398 aa)
initn: 1992 init1: 1868 opt: 1868 Z-score: 1307.7 bits: 250.9 E(85289): 4.2e-66
Smith-Waterman score: 1868; 61.4% identity (88.0% similar) in 391 aa overlap (1-391:1-391)
10 20 30 40 50 60
pF1KA1 MAAEIHSRPQSSRPVLLSKIEGHQDAVTAALLIPKEDGVITASEDRTIRVWLKRDSGQYW
:::::. .: . .:.::...:: :..:. :...:::.:::..:::::.::::::::::::
XP_011 MAAEIQPKPLTRKPILLQRMEGSQEVVNMAVIVPKEEGVISVSEDRTVRVWLKRDSGQYW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 PSIYHTMASPCSAMAYHHDSRRIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAI
::.::.: :::: :... ..::. .: :::.. :: .:::.:::. .:.: :::.::. :
XP_011 PSVYHAMPSPCSCMSFNPETRRLSIGLDNGTISEFILSEDYNKMTPVKNYQAHQSRVTMI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 IFSLATEWVISTGHDKCVSWMCTRSGNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQIT
.: : :::.:::.:: .: :..::. :: . .. :: ::.: .:...:.::.:::.:
XP_011 LFVLELEWVLSTGQDKQFAWHCSESGQRLGGYRTSAVASGLQFDVETRHVFIGDHSGQVT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 LLKLEQNTCSVITTLKGHEGSVACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQG
.:::::..:...::..:: :.:. : :::.::.::::.::.:.:::::::::: .. :::
XP_011 ILKLEQENCTLVTTFRGHTGGVTALCWDPVQRVLFSGSSDHSVIMWDIGGRKGTAIELQG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 HHDKVQSLCYLQLTRQLVSCSSDGGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQ
:.:.::.: : : ::::.::..::::.:::::: :.:.:.::.:::::::.::::::.::
XP_011 HNDRVQALSYAQHTRQLISCGGDGGIVVWNMDVERQETPEWLDSDSCQKCDQPFFWNFKQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 MWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDEDRTSLA
:::.: .:::::::::::.:::::::::::: :.:::::.:::::::...: ::.:. :
XP_011 MWDSKKIGLRQHHCRKCGKAVCGKCSSKRSSIPLMGFEFEVRVCDSCHEAITDEERAPTA
310 320 330 340 350 360
370 380 390 400 410
pF1KA1 TFHEGKHNISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH
:::..:::: :. .: .:: ..: :::...:
XP_011 TFHDSKHNIVHVHFDATRGWLLTSGTDKVIKPTEPLRG
370 380 390
>>XP_011533217 (OMIM: 610418) PREDICTED: WD repeat and F (311 aa)
initn: 1505 init1: 1505 opt: 1505 Z-score: 1059.6 bits: 204.6 E(85289): 2.8e-52
Smith-Waterman score: 1505; 63.2% identity (88.3% similar) in 307 aa overlap (93-399:4-310)
70 80 90 100 110 120
pF1KA1 IYHTMASPCSAMAYHHDSRRIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAIIF
.:: .:::.:::. .:.: :::.::. :.:
XP_011 MQCLEFILSEDYNKMTPVKNYQAHQSRVTMILF
10 20 30
130 140 150 160 170 180
pF1KA1 SLATEWVISTGHDKCVSWMCTRSGNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQITLL
: :::.:::.:: .: :..::. :: . .. :: ::.: .:...:.::.:::.:.:
XP_011 VLELEWVLSTGQDKQFAWHCSESGQRLGGYRTSAVASGLQFDVETRHVFIGDHSGQVTIL
40 50 60 70 80 90
190 200 210 220 230 240
pF1KA1 KLEQNTCSVITTLKGHEGSVACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQGHH
::::..:...::..:: :.:. : :::.::.::::.::.:.:::::::::: .. ::::.
XP_011 KLEQENCTLVTTFRGHTGGVTALCWDPVQRVLFSGSSDHSVIMWDIGGRKGTAIELQGHN
100 110 120 130 140 150
250 260 270 280 290 300
pF1KA1 DKVQSLCYLQLTRQLVSCSSDGGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQMW
:.::.: : : ::::.::..::::.:::::: :.:.:.::.:::::::.::::::.::::
XP_011 DRVQALSYAQHTRQLISCGGDGGIVVWNMDVERQETPEWLDSDSCQKCDQPFFWNFKQMW
160 170 180 190 200 210
310 320 330 340 350 360
pF1KA1 DTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDEDRTSLATF
:.: .:::::::::::.:::::::::::: :.:::::.:::::::...: ::.:. :::
XP_011 DSKKIGLRQHHCRKCGKAVCGKCSSKRSSIPLMGFEFEVRVCDSCHEAITDEERAPTATF
220 230 240 250 260 270
370 380 390 400 410
pF1KA1 HEGKHNISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH
:..:::: :. .: .:: ..: :::...:.:::::::
XP_011 HDSKHNIVHVHFDATRGWLLTSGTDKVIKLWDMTPVVS
280 290 300 310
>>XP_016875875 (OMIM: 610418) PREDICTED: WD repeat and F (311 aa)
initn: 1505 init1: 1505 opt: 1505 Z-score: 1059.6 bits: 204.6 E(85289): 2.8e-52
Smith-Waterman score: 1505; 63.2% identity (88.3% similar) in 307 aa overlap (93-399:4-310)
70 80 90 100 110 120
pF1KA1 IYHTMASPCSAMAYHHDSRRIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAIIF
.:: .:::.:::. .:.: :::.::. :.:
XP_016 MQCLEFILSEDYNKMTPVKNYQAHQSRVTMILF
10 20 30
130 140 150 160 170 180
pF1KA1 SLATEWVISTGHDKCVSWMCTRSGNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQITLL
: :::.:::.:: .: :..::. :: . .. :: ::.: .:...:.::.:::.:.:
XP_016 VLELEWVLSTGQDKQFAWHCSESGQRLGGYRTSAVASGLQFDVETRHVFIGDHSGQVTIL
40 50 60 70 80 90
190 200 210 220 230 240
pF1KA1 KLEQNTCSVITTLKGHEGSVACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQGHH
::::..:...::..:: :.:. : :::.::.::::.::.:.:::::::::: .. ::::.
XP_016 KLEQENCTLVTTFRGHTGGVTALCWDPVQRVLFSGSSDHSVIMWDIGGRKGTAIELQGHN
100 110 120 130 140 150
250 260 270 280 290 300
pF1KA1 DKVQSLCYLQLTRQLVSCSSDGGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQMW
:.::.: : : ::::.::..::::.:::::: :.:.:.::.:::::::.::::::.::::
XP_016 DRVQALSYAQHTRQLISCGGDGGIVVWNMDVERQETPEWLDSDSCQKCDQPFFWNFKQMW
160 170 180 190 200 210
310 320 330 340 350 360
pF1KA1 DTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDEDRTSLATF
:.: .:::::::::::.:::::::::::: :.:::::.:::::::...: ::.:. :::
XP_016 DSKKIGLRQHHCRKCGKAVCGKCSSKRSSIPLMGFEFEVRVCDSCHEAITDEERAPTATF
220 230 240 250 260 270
370 380 390 400 410
pF1KA1 HEGKHNISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH
:..:::: :. .: .:: ..: :::...:.:::::::
XP_016 HDSKHNIVHVHFDATRGWLLTSGTDKVIKLWDMTPVVS
280 290 300 310
>>NP_006089 (OMIM: 176981) receptor of activated protein (317 aa)
initn: 206 init1: 81 opt: 249 Z-score: 197.1 bits: 45.0 E(85289): 0.00031
Smith-Waterman score: 249; 23.0% identity (54.1% similar) in 305 aa overlap (16-307:7-298)
10 20 30 40 50
pF1KA1 MAAEIHSRPQSSRPVLLSKIEGHQDAVTAALLIPK-EDGVITASEDRTIRVW-LKRDSGQ
: . ..::. :: :. : ...::.:.:: .: : :: .
NP_006 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN
10 20 30 40 50
60 70 80 90 100 110
pF1KA1 YW-PS-IYHTMASPCSAMAYHHDSRRIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNR
: :. . . : .. :.. . :. .:.. . .. . :. .: .
NP_006 YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV----GHTKD
60 70 80 90 100
120 130 140 150 160 170
pF1KA1 VSAIIFSLATEWVISTGHDKCVS-W----MCTRSGNMLGRHFFTSWASCLQYDFDTQYAF
: .. :: .. ..: ..:: .. : .: . . . . :.::.... ... .
NP_006 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT---VQDESHSEWVSCVRFSPNSSNPI
110 120 130 140 150 160
180 190 200 210 220 230
pF1KA1 VGDYSGQITLLKL-EQNTCSVITTLKGHEGSVACLWWDPIQRLLFSGASDNSIIMWDIGG
. . : :.:. . .:.. :. :: : . . .: : ::..:.. ..::..
NP_006 IVS-CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN-
170 180 190 200 210 220
240 250 260 270 280
pF1KA1 RKGRTLLLQGHHDKVQSLCYLQLTRQLVSCSSDG-GIAVWNMD--VSREEAPQWLESDSC
.:. : : ...::. : :.. : .: .:... . .: : . : :
NP_006 -EGKHLYTLDGGDIINALCFSPNRYWL--CAATGPSIKIWDLEGKIIVDELKQEVISTS-
230 240 250 260 270
290 300 310 320 330 340
pF1KA1 QKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSC
.: : : .. : .::
NP_006 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR
280 290 300 310
>>XP_016878353 (OMIM: 602703,616212) PREDICTED: katanin (655 aa)
initn: 205 init1: 115 opt: 228 Z-score: 179.3 bits: 42.8 E(85289): 0.003
Smith-Waterman score: 228; 25.9% identity (62.0% similar) in 166 aa overlap (112-275:18-180)
90 100 110 120 130
pF1KA1 RIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAIIFSLATEWVISTGHDKC-VS-
:: . ::..... :. ...:: : : :.
XP_016 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNL
10 20 30 40
140 150 160 170 180 190
pF1KA1 WMCTRSGNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQITLLKLEQNTCSVITTLKGHE
: .. . ... :: . .. . . .:. ::.: . :: . ... :: ::.
XP_016 WSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLE--AAKILRTLMGHK
50 60 70 80 90 100
200 210 220 230 240 250
pF1KA1 GSVACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQGHHDKVQSLCYLQLTRQLVS
... : . : ... ::..:..: .::: ::: .. .:: . :. : . . :.:
XP_016 ANICSLDFHPYGEFVASGSQDTNIKLWDIR-RKGCVFRYRGHSQAVRCLRFSPDGKWLAS
110 120 130 140 150 160
260 270 280 290 300 310
pF1KA1 CSSDGGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQ
..: . .:.. ...
XP_016 AADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVV
170 180 190 200 210 220
>>NP_005877 (OMIM: 602703,616212) katanin p80 WD40 repea (655 aa)
initn: 205 init1: 115 opt: 228 Z-score: 179.3 bits: 42.8 E(85289): 0.003
Smith-Waterman score: 228; 25.9% identity (62.0% similar) in 166 aa overlap (112-275:18-180)
90 100 110 120 130
pF1KA1 RIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAIIFSLATEWVISTGHDKC-VS-
:: . ::..... :. ...:: : : :.
NP_005 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNL
10 20 30 40
140 150 160 170 180 190
pF1KA1 WMCTRSGNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQITLLKLEQNTCSVITTLKGHE
: .. . ... :: . .. . . .:. ::.: . :: . ... :: ::.
NP_005 WSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLE--AAKILRTLMGHK
50 60 70 80 90 100
200 210 220 230 240 250
pF1KA1 GSVACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQGHHDKVQSLCYLQLTRQLVS
... : . : ... ::..:..: .::: ::: .. .:: . :. : . . :.:
NP_005 ANICSLDFHPYGEFVASGSQDTNIKLWDIR-RKGCVFRYRGHSQAVRCLRFSPDGKWLAS
110 120 130 140 150 160
260 270 280 290 300 310
pF1KA1 CSSDGGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQ
..: . .:.. ...
NP_005 AADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVV
170 180 190 200 210 220
>>XP_016878352 (OMIM: 602703,616212) PREDICTED: katanin (655 aa)
initn: 205 init1: 115 opt: 228 Z-score: 179.3 bits: 42.8 E(85289): 0.003
Smith-Waterman score: 228; 25.9% identity (62.0% similar) in 166 aa overlap (112-275:18-180)
90 100 110 120 130
pF1KA1 RIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAIIFSLATEWVISTGHDKC-VS-
:: . ::..... :. ...:: : : :.
XP_016 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNL
10 20 30 40
140 150 160 170 180 190
pF1KA1 WMCTRSGNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQITLLKLEQNTCSVITTLKGHE
: .. . ... :: . .. . . .:. ::.: . :: . ... :: ::.
XP_016 WSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLE--AAKILRTLMGHK
50 60 70 80 90 100
200 210 220 230 240 250
pF1KA1 GSVACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQGHHDKVQSLCYLQLTRQLVS
... : . : ... ::..:..: .::: ::: .. .:: . :. : . . :.:
XP_016 ANICSLDFHPYGEFVASGSQDTNIKLWDIR-RKGCVFRYRGHSQAVRCLRFSPDGKWLAS
110 120 130 140 150 160
260 270 280 290 300 310
pF1KA1 CSSDGGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQ
..: . .:.. ...
XP_016 AADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVV
170 180 190 200 210 220
>>XP_006721186 (OMIM: 602703,616212) PREDICTED: katanin (658 aa)
initn: 205 init1: 115 opt: 228 Z-score: 179.2 bits: 42.8 E(85289): 0.003
Smith-Waterman score: 228; 25.9% identity (62.0% similar) in 166 aa overlap (112-275:18-180)
90 100 110 120 130
pF1KA1 RIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAIIFSLATEWVISTGHDKC-VS-
:: . ::..... :. ...:: : : :.
XP_006 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNL
10 20 30 40
140 150 160 170 180 190
pF1KA1 WMCTRSGNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQITLLKLEQNTCSVITTLKGHE
: .. . ... :: . .. . . .:. ::.: . :: . ... :: ::.
XP_006 WSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLE--AAKILRTLMGHK
50 60 70 80 90 100
200 210 220 230 240 250
pF1KA1 GSVACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQGHHDKVQSLCYLQLTRQLVS
... : . : ... ::..:..: .::: ::: .. .:: . :. : . . :.:
XP_006 ANICSLDFHPYGEFVASGSQDTNIKLWDIR-RKGCVFRYRGHSQAVRCLRFSPDGKWLAS
110 120 130 140 150 160
260 270 280 290 300 310
pF1KA1 CSSDGGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQ
..: . .:.. ...
XP_006 AADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVV
170 180 190 200 210 220
>>XP_005255829 (OMIM: 602703,616212) PREDICTED: katanin (672 aa)
initn: 205 init1: 115 opt: 228 Z-score: 179.1 bits: 42.8 E(85289): 0.0031
Smith-Waterman score: 228; 25.9% identity (62.0% similar) in 166 aa overlap (112-275:18-180)
90 100 110 120 130
pF1KA1 RIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAIIFSLATEWVISTGHDKC-VS-
:: . ::..... :. ...:: : : :.
XP_005 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNL
10 20 30 40
140 150 160 170 180 190
pF1KA1 WMCTRSGNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQITLLKLEQNTCSVITTLKGHE
: .. . ... :: . .. . . .:. ::.: . :: . ... :: ::.
XP_005 WSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLE--AAKILRTLMGHK
50 60 70 80 90 100
200 210 220 230 240 250
pF1KA1 GSVACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQGHHDKVQSLCYLQLTRQLVS
... : . : ... ::..:..: .::: ::: .. .:: . :. : . . :.:
XP_005 ANICSLDFHPYGEFVASGSQDTNIKLWDIR-RKGCVFRYRGHSQAVRCLRFSPDGKWLAS
110 120 130 140 150 160
260 270 280 290 300 310
pF1KA1 CSSDGGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQ
..: . .:.. ...
XP_005 AADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVV
170 180 190 200 210 220
410 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 06:15:27 2016 done: Thu Nov 3 06:15:28 2016
Total Scan time: 7.410 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]