FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1435, 410 aa
  1>>>pF1KA1435 410 - 410 aa - 410 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8959+/-0.00115; mu= 4.3994+/- 0.067
 mean_var=174.2759+/-37.858, 0's: 0 Z-trim(105.9): 132  B-trim: 54 in 1/50
 Lambda= 0.097153
 statistics sampled from 8572 (8706) to 8572 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.267), width:  16
 Scan time:  2.530

The best scores are:                                      opt bits E(32554)
CCDS33387.1 WDFY1 gene_id:57590|Hs108|chr2         ( 410) 2885 417.2 1.4e-116
CCDS9429.1 WDFY2 gene_id:115825|Hs108|chr13        ( 400) 1925 282.6 4.5e-76


>>CCDS33387.1 WDFY1 gene_id:57590|Hs108|chr2              (410 aa)
 initn: 2885 init1: 2885 opt: 2885  Z-score: 2206.3  bits: 417.2 E(32554): 1.4e-116
Smith-Waterman score: 2885; 100.0% identity (100.0% similar) in 410 aa overlap (1-410:1-410)

               10        20        30        40        50        60
pF1KA1 MAAEIHSRPQSSRPVLLSKIEGHQDAVTAALLIPKEDGVITASEDRTIRVWLKRDSGQYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAAEIHSRPQSSRPVLLSKIEGHQDAVTAALLIPKEDGVITASEDRTIRVWLKRDSGQYW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 PSIYHTMASPCSAMAYHHDSRRIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PSIYHTMASPCSAMAYHHDSRRIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 IFSLATEWVISTGHDKCVSWMCTRSGNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IFSLATEWVISTGHDKCVSWMCTRSGNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQIT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 LLKLEQNTCSVITTLKGHEGSVACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LLKLEQNTCSVITTLKGHEGSVACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 HHDKVQSLCYLQLTRQLVSCSSDGGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HHDKVQSLCYLQLTRQLVSCSSDGGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 MWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDEDRTSLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDEDRTSLA
              310       320       330       340       350       360

              370       380       390       400       410
pF1KA1 TFHEGKHNISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TFHEGKHNISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH
              370       380       390       400       410

>>CCDS9429.1 WDFY2 gene_id:115825|Hs108|chr13             (400 aa)
 initn: 1925 init1: 1925 opt: 1925  Z-score: 1479.3  bits: 282.6 E(32554): 4.5e-76
Smith-Waterman score: 1925; 61.9% identity (88.2% similar) in 399 aa overlap (1-399:1-399)

               10        20        30        40        50        60
pF1KA1 MAAEIHSRPQSSRPVLLSKIEGHQDAVTAALLIPKEDGVITASEDRTIRVWLKRDSGQYW
       :::::. .: . .:.::...:: :..:. :...:::.:::..:::::.::::::::::::
CCDS94 MAAEIQPKPLTRKPILLQRMEGSQEVVNMAVIVPKEEGVISVSEDRTVRVWLKRDSGQYW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 PSIYHTMASPCSAMAYHHDSRRIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAI
       ::.::.: :::: :... ..::. .: :::.. :: .:::.:::. .:.: :::.::. :
CCDS94 PSVYHAMPSPCSCMSFNPETRRLSIGLDNGTISEFILSEDYNKMTPVKNYQAHQSRVTMI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 IFSLATEWVISTGHDKCVSWMCTRSGNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQIT
       .: :  :::.:::.::  .: :..::. :: .  .. :: ::.: .:...:.::.:::.:
CCDS94 LFVLELEWVLSTGQDKQFAWHCSESGQRLGGYRTSAVASGLQFDVETRHVFIGDHSGQVT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 LLKLEQNTCSVITTLKGHEGSVACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQG
       .:::::..:...::..:: :.:. : :::.::.::::.::.:.:::::::::: .. :::
CCDS94 ILKLEQENCTLVTTFRGHTGGVTALCWDPVQRVLFSGSSDHSVIMWDIGGRKGTAIELQG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 HHDKVQSLCYLQLTRQLVSCSSDGGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQ
       :.:.::.: : : ::::.::..::::.:::::: :.:.:.::.:::::::.::::::.::
CCDS94 HNDRVQALSYAQHTRQLISCGGDGGIVVWNMDVERQETPEWLDSDSCQKCDQPFFWNFKQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 MWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDEDRTSLA
       :::.: .:::::::::::.:::::::::::: :.:::::.:::::::...: ::.:.  :
CCDS94 MWDSKKIGLRQHHCRKCGKAVCGKCSSKRSSIPLMGFEFEVRVCDSCHEAITDEERAPTA
              310       320       330       340       350       360

              370       380       390       400       410
pF1KA1 TFHEGKHNISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH
       :::..:::: :. .: .:: ..: :::...:.:::::::           
CCDS94 TFHDSKHNIVHVHFDATRGWLLTSGTDKVIKLWDMTPVVS          
              370       380       390       400          




410 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:15:26 2016 done: Thu Nov  3 06:15:27 2016
 Total Scan time:  2.530 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]