Result of FASTA (omim) for
pF1KA1434
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1434, 672 aa
1>>>pF1KA1434 672 - 672 aa - 672 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1411+/-0.000389; mu= 14.3274+/- 0.024
mean_var=64.0373+/-12.628, 0's: 0 Z-trim(111.2): 29 B-trim: 44 in 1/54
Lambda= 0.160272
statistics sampled from 19738 (19761) to 19738 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.593), E-opt: 0.2 (0.232), width: 16
Scan time: 7.390
The best scores are: opt bits E(85289)
XP_005260815 (OMIM: 614124) PREDICTED: glycerophos ( 672) 4520 1054.3 0
NP_062539 (OMIM: 614124) glycerophosphocholine pho ( 672) 4520 1054.3 0
XP_006723659 (OMIM: 614124) PREDICTED: glycerophos ( 672) 4520 1054.3 0
XP_005260818 (OMIM: 614124) PREDICTED: glycerophos ( 491) 3292 770.4 0
>>XP_005260815 (OMIM: 614124) PREDICTED: glycerophosphoc (672 aa)
initn: 4520 init1: 4520 opt: 4520 Z-score: 5641.9 bits: 1054.3 E(85289): 0
Smith-Waterman score: 4520; 100.0% identity (100.0% similar) in 672 aa overlap (1-672:1-672)
10 20 30 40 50 60
pF1KA1 MTPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MTPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 GVSVQYRYFKGYFLEPKTIGGPCQVIVHKWETHLQPRSITPLESEIIIDDGQFGIHNGVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVSVQYRYFKGYFLEPKTIGGPCQVIVHKWETHLQPRSITPLESEIIIDDGQFGIHNGVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 TLDSGWLTCQTEIRLRLHYSEKPPVSITKKKLKKSRFRVKLTLEGLEEDDDDRVSPTVLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLDSGWLTCQTEIRLRLHYSEKPPVSITKKKLKKSRFRVKLTLEGLEEDDDDRVSPTVLH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 KMSNSLEISLISDNEFKCRHSQPECGYGLQPDRWTEYSIQTMEPDNLELIFDFFEEDLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KMSNSLEISLISDNEFKCRHSQPECGYGLQPDRWTEYSIQTMEPDNLELIFDFFEEDLSE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 HVVQGDALPGHVGTACLLSSTIAESGKSAGILTLPIMSRNSRKTIGKVRVDYIIIKPLPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HVVQGDALPGHVGTACLLSSTIAESGKSAGILTLPIMSRNSRKTIGKVRVDYIIIKPLPG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 YSCDMKSSFSKYWKPRIPLDVGHRGAGNSTTTAQLAKVQENTIASLRNAASHGAAFVEFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YSCDMKSSFSKYWKPRIPLDVGHRGAGNSTTTAQLAKVQENTIASLRNAASHGAAFVEFD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 VHLSKDFVPVVYHDLTCCLTMKKKFDADPVELFEIPVKELTFDQLQLLKLTHVTALKSKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VHLSKDFVPVVYHDLTCCLTMKKKFDADPVELFEIPVKELTFDQLQLLKLTHVTALKSKD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 RKESVVQEENSFSENQPFPSLKMVLESLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RKESVVQEENSFSENQPFPSLKMVLESLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 LFLDIILKTVLENSGKRRIVFSSFDADICTMVRQKQNKYPILFLTQGKSEIYPELMDLRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LFLDIILKTVLENSGKRRIVFSSFDADICTMVRQKQNKYPILFLTQGKSEIYPELMDLRS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 RTTPIAMSFAQFENLLGINVHTEDLLRNPSYIQEAKAKGLVIFCWGDDTNDPENRRKLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RTTPIAMSFAQFENLLGINVHTEDLLRNPSYIQEAKAKGLVIFCWGDDTNDPENRRKLKE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 LGVNGLIYDRIYDWMPEQPNIFQVEQLERLKQELPELKSCLCPTVSRFVPSSLCGESDIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LGVNGLIYDRIYDWMPEQPNIFQVEQLERLKQELPELKSCLCPTVSRFVPSSLCGESDIH
610 620 630 640 650 660
670
pF1KA1 VDANGIDNVENA
::::::::::::
XP_005 VDANGIDNVENA
670
>>NP_062539 (OMIM: 614124) glycerophosphocholine phospho (672 aa)
initn: 4520 init1: 4520 opt: 4520 Z-score: 5641.9 bits: 1054.3 E(85289): 0
Smith-Waterman score: 4520; 100.0% identity (100.0% similar) in 672 aa overlap (1-672:1-672)
10 20 30 40 50 60
pF1KA1 MTPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 MTPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 GVSVQYRYFKGYFLEPKTIGGPCQVIVHKWETHLQPRSITPLESEIIIDDGQFGIHNGVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 GVSVQYRYFKGYFLEPKTIGGPCQVIVHKWETHLQPRSITPLESEIIIDDGQFGIHNGVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 TLDSGWLTCQTEIRLRLHYSEKPPVSITKKKLKKSRFRVKLTLEGLEEDDDDRVSPTVLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 TLDSGWLTCQTEIRLRLHYSEKPPVSITKKKLKKSRFRVKLTLEGLEEDDDDRVSPTVLH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 KMSNSLEISLISDNEFKCRHSQPECGYGLQPDRWTEYSIQTMEPDNLELIFDFFEEDLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 KMSNSLEISLISDNEFKCRHSQPECGYGLQPDRWTEYSIQTMEPDNLELIFDFFEEDLSE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 HVVQGDALPGHVGTACLLSSTIAESGKSAGILTLPIMSRNSRKTIGKVRVDYIIIKPLPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 HVVQGDALPGHVGTACLLSSTIAESGKSAGILTLPIMSRNSRKTIGKVRVDYIIIKPLPG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 YSCDMKSSFSKYWKPRIPLDVGHRGAGNSTTTAQLAKVQENTIASLRNAASHGAAFVEFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 YSCDMKSSFSKYWKPRIPLDVGHRGAGNSTTTAQLAKVQENTIASLRNAASHGAAFVEFD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 VHLSKDFVPVVYHDLTCCLTMKKKFDADPVELFEIPVKELTFDQLQLLKLTHVTALKSKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 VHLSKDFVPVVYHDLTCCLTMKKKFDADPVELFEIPVKELTFDQLQLLKLTHVTALKSKD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 RKESVVQEENSFSENQPFPSLKMVLESLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 RKESVVQEENSFSENQPFPSLKMVLESLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 LFLDIILKTVLENSGKRRIVFSSFDADICTMVRQKQNKYPILFLTQGKSEIYPELMDLRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 LFLDIILKTVLENSGKRRIVFSSFDADICTMVRQKQNKYPILFLTQGKSEIYPELMDLRS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 RTTPIAMSFAQFENLLGINVHTEDLLRNPSYIQEAKAKGLVIFCWGDDTNDPENRRKLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 RTTPIAMSFAQFENLLGINVHTEDLLRNPSYIQEAKAKGLVIFCWGDDTNDPENRRKLKE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 LGVNGLIYDRIYDWMPEQPNIFQVEQLERLKQELPELKSCLCPTVSRFVPSSLCGESDIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 LGVNGLIYDRIYDWMPEQPNIFQVEQLERLKQELPELKSCLCPTVSRFVPSSLCGESDIH
610 620 630 640 650 660
670
pF1KA1 VDANGIDNVENA
::::::::::::
NP_062 VDANGIDNVENA
670
>>XP_006723659 (OMIM: 614124) PREDICTED: glycerophosphoc (672 aa)
initn: 4520 init1: 4520 opt: 4520 Z-score: 5641.9 bits: 1054.3 E(85289): 0
Smith-Waterman score: 4520; 100.0% identity (100.0% similar) in 672 aa overlap (1-672:1-672)
10 20 30 40 50 60
pF1KA1 MTPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MTPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 GVSVQYRYFKGYFLEPKTIGGPCQVIVHKWETHLQPRSITPLESEIIIDDGQFGIHNGVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GVSVQYRYFKGYFLEPKTIGGPCQVIVHKWETHLQPRSITPLESEIIIDDGQFGIHNGVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 TLDSGWLTCQTEIRLRLHYSEKPPVSITKKKLKKSRFRVKLTLEGLEEDDDDRVSPTVLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TLDSGWLTCQTEIRLRLHYSEKPPVSITKKKLKKSRFRVKLTLEGLEEDDDDRVSPTVLH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 KMSNSLEISLISDNEFKCRHSQPECGYGLQPDRWTEYSIQTMEPDNLELIFDFFEEDLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KMSNSLEISLISDNEFKCRHSQPECGYGLQPDRWTEYSIQTMEPDNLELIFDFFEEDLSE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 HVVQGDALPGHVGTACLLSSTIAESGKSAGILTLPIMSRNSRKTIGKVRVDYIIIKPLPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HVVQGDALPGHVGTACLLSSTIAESGKSAGILTLPIMSRNSRKTIGKVRVDYIIIKPLPG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 YSCDMKSSFSKYWKPRIPLDVGHRGAGNSTTTAQLAKVQENTIASLRNAASHGAAFVEFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YSCDMKSSFSKYWKPRIPLDVGHRGAGNSTTTAQLAKVQENTIASLRNAASHGAAFVEFD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 VHLSKDFVPVVYHDLTCCLTMKKKFDADPVELFEIPVKELTFDQLQLLKLTHVTALKSKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VHLSKDFVPVVYHDLTCCLTMKKKFDADPVELFEIPVKELTFDQLQLLKLTHVTALKSKD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 RKESVVQEENSFSENQPFPSLKMVLESLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RKESVVQEENSFSENQPFPSLKMVLESLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 LFLDIILKTVLENSGKRRIVFSSFDADICTMVRQKQNKYPILFLTQGKSEIYPELMDLRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LFLDIILKTVLENSGKRRIVFSSFDADICTMVRQKQNKYPILFLTQGKSEIYPELMDLRS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 RTTPIAMSFAQFENLLGINVHTEDLLRNPSYIQEAKAKGLVIFCWGDDTNDPENRRKLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RTTPIAMSFAQFENLLGINVHTEDLLRNPSYIQEAKAKGLVIFCWGDDTNDPENRRKLKE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 LGVNGLIYDRIYDWMPEQPNIFQVEQLERLKQELPELKSCLCPTVSRFVPSSLCGESDIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LGVNGLIYDRIYDWMPEQPNIFQVEQLERLKQELPELKSCLCPTVSRFVPSSLCGESDIH
610 620 630 640 650 660
670
pF1KA1 VDANGIDNVENA
::::::::::::
XP_006 VDANGIDNVENA
670
>>XP_005260818 (OMIM: 614124) PREDICTED: glycerophosphoc (491 aa)
initn: 3292 init1: 3292 opt: 3292 Z-score: 4109.7 bits: 770.4 E(85289): 0
Smith-Waterman score: 3292; 100.0% identity (100.0% similar) in 491 aa overlap (182-672:1-491)
160 170 180 190 200 210
pF1KA1 LKKSRFRVKLTLEGLEEDDDDRVSPTVLHKMSNSLEISLISDNEFKCRHSQPECGYGLQP
::::::::::::::::::::::::::::::
XP_005 MSNSLEISLISDNEFKCRHSQPECGYGLQP
10 20 30
220 230 240 250 260 270
pF1KA1 DRWTEYSIQTMEPDNLELIFDFFEEDLSEHVVQGDALPGHVGTACLLSSTIAESGKSAGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DRWTEYSIQTMEPDNLELIFDFFEEDLSEHVVQGDALPGHVGTACLLSSTIAESGKSAGI
40 50 60 70 80 90
280 290 300 310 320 330
pF1KA1 LTLPIMSRNSRKTIGKVRVDYIIIKPLPGYSCDMKSSFSKYWKPRIPLDVGHRGAGNSTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LTLPIMSRNSRKTIGKVRVDYIIIKPLPGYSCDMKSSFSKYWKPRIPLDVGHRGAGNSTT
100 110 120 130 140 150
340 350 360 370 380 390
pF1KA1 TAQLAKVQENTIASLRNAASHGAAFVEFDVHLSKDFVPVVYHDLTCCLTMKKKFDADPVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TAQLAKVQENTIASLRNAASHGAAFVEFDVHLSKDFVPVVYHDLTCCLTMKKKFDADPVE
160 170 180 190 200 210
400 410 420 430 440 450
pF1KA1 LFEIPVKELTFDQLQLLKLTHVTALKSKDRKESVVQEENSFSENQPFPSLKMVLESLPED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LFEIPVKELTFDQLQLLKLTHVTALKSKDRKESVVQEENSFSENQPFPSLKMVLESLPED
220 230 240 250 260 270
460 470 480 490 500 510
pF1KA1 VGFNIEIKWICQQRDGMWDGNLSTYFDMNLFLDIILKTVLENSGKRRIVFSSFDADICTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VGFNIEIKWICQQRDGMWDGNLSTYFDMNLFLDIILKTVLENSGKRRIVFSSFDADICTM
280 290 300 310 320 330
520 530 540 550 560 570
pF1KA1 VRQKQNKYPILFLTQGKSEIYPELMDLRSRTTPIAMSFAQFENLLGINVHTEDLLRNPSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VRQKQNKYPILFLTQGKSEIYPELMDLRSRTTPIAMSFAQFENLLGINVHTEDLLRNPSY
340 350 360 370 380 390
580 590 600 610 620 630
pF1KA1 IQEAKAKGLVIFCWGDDTNDPENRRKLKELGVNGLIYDRIYDWMPEQPNIFQVEQLERLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IQEAKAKGLVIFCWGDDTNDPENRRKLKELGVNGLIYDRIYDWMPEQPNIFQVEQLERLK
400 410 420 430 440 450
640 650 660 670
pF1KA1 QELPELKSCLCPTVSRFVPSSLCGESDIHVDANGIDNVENA
:::::::::::::::::::::::::::::::::::::::::
XP_005 QELPELKSCLCPTVSRFVPSSLCGESDIHVDANGIDNVENA
460 470 480 490
672 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 21:10:30 2016 done: Wed Nov 2 21:10:31 2016
Total Scan time: 7.390 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]