FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1430, 532 aa
  1>>>pF1KA1430 532 - 532 aa - 532 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9896+/-0.000911; mu= 1.8910+/- 0.055
 mean_var=173.5849+/-34.839, 0's: 0 Z-trim(111.7): 26  B-trim: 32 in 2/52
 Lambda= 0.097346
 statistics sampled from 12561 (12570) to 12561 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.386), width:  16
 Scan time:  3.810

The best scores are:                                      opt bits E(32554)
CCDS47168.1 CFAP97 gene_id:57587|Hs108|chr4        ( 532) 3491 502.4 5.3e-142
CCDS75216.1 CFAP97 gene_id:57587|Hs108|chr4        ( 453) 2884 417.1 2.1e-116


>>CCDS47168.1 CFAP97 gene_id:57587|Hs108|chr4             (532 aa)
 initn: 3491 init1: 3491 opt: 3491  Z-score: 2662.8  bits: 502.4 E(32554): 5.3e-142
Smith-Waterman score: 3491; 100.0% identity (100.0% similar) in 532 aa overlap (1-532:1-532)

               10        20        30        40        50        60
pF1KA1 MDQFGDILEGEVDHSFFDSDFEEGKKCETNSVFDKQNDDPKERIDKDTKNVNSNTGMQTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MDQFGDILEGEVDHSFFDSDFEEGKKCETNSVFDKQNDDPKERIDKDTKNVNSNTGMQTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 ENYLTEKGNERNVKFPPEHPVENDVTQTVSSFSLPASSRSKKLCDVTTGLKIHVSIPNRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ENYLTEKGNERNVKFPPEHPVENDVTQTVSSFSLPASSRSKKLCDVTTGLKIHVSIPNRI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 PKIVKEGEDDYYTDGEESSDDGKKYHVKSKSAKPSTNVKKSIRKKYCKVSSSSSSSLSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PKIVKEGEDDYYTDGEESSDDGKKYHVKSKSAKPSTNVKKSIRKKYCKVSSSSSSSLSSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 SSGSGTDCLDAGSDSHLSDSSPSSKSSKKHVSGITLLSPKHKYKSGIKSTETQPSSTTPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SSGSGTDCLDAGSDSHLSDSSPSSKSSKKHVSGITLLSPKHKYKSGIKSTETQPSSTTPK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 CGHYPEESEDTVTDVSPLSTPDISPLQSFELGIANDQKVKIKKQENVSQEIYEDVEDLKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 CGHYPEESEDTVTDVSPLSTPDISPLQSFELGIANDQKVKIKKQENVSQEIYEDVEDLKN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 NSKYLKAAKKGKEKHEPDVSSKSSSVLDSSLDHRHKQKVLHDTMDLNHLLKAFLQLDKKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NSKYLKAAKKGKEKHEPDVSSKSSSVLDSSLDHRHKQKVLHDTMDLNHLLKAFLQLDKKG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 PQKHHFDQPSVAPGKNYSFTREEVRQIDRENQRLLKELSRQAEKPGSKSTIPRSADHPPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PQKHHFDQPSVAPGKNYSFTREEVRQIDRENQRLLKELSRQAEKPGSKSTIPRSADHPPK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 LYHSALNRQKEQQRIERENLALLKRLEAVKPTVGMKRSEQLMDYHRNMGYLNSSPLSRRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LYHSALNRQKEQQRIERENLALLKRLEAVKPTVGMKRSEQLMDYHRNMGYLNSSPLSRRA
              430       440       450       460       470       480

              490       500       510       520       530  
pF1KA1 RSTLGQYSPLRASRTSSATSGLSCRSERSAVDPSSGHPRRRPKPPNVRTAWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RSTLGQYSPLRASRTSSATSGLSCRSERSAVDPSSGHPRRRPKPPNVRTAWL
              490       500       510       520       530  

>>CCDS75216.1 CFAP97 gene_id:57587|Hs108|chr4             (453 aa)
 initn: 2931 init1: 2884 opt: 2884  Z-score: 2203.2  bits: 417.1 E(32554): 2.1e-116
Smith-Waterman score: 2884; 99.5% identity (100.0% similar) in 442 aa overlap (1-442:1-442)

               10        20        30        40        50        60
pF1KA1 MDQFGDILEGEVDHSFFDSDFEEGKKCETNSVFDKQNDDPKERIDKDTKNVNSNTGMQTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MDQFGDILEGEVDHSFFDSDFEEGKKCETNSVFDKQNDDPKERIDKDTKNVNSNTGMQTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 ENYLTEKGNERNVKFPPEHPVENDVTQTVSSFSLPASSRSKKLCDVTTGLKIHVSIPNRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ENYLTEKGNERNVKFPPEHPVENDVTQTVSSFSLPASSRSKKLCDVTTGLKIHVSIPNRI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 PKIVKEGEDDYYTDGEESSDDGKKYHVKSKSAKPSTNVKKSIRKKYCKVSSSSSSSLSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PKIVKEGEDDYYTDGEESSDDGKKYHVKSKSAKPSTNVKKSIRKKYCKVSSSSSSSLSSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 SSGSGTDCLDAGSDSHLSDSSPSSKSSKKHVSGITLLSPKHKYKSGIKSTETQPSSTTPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SSGSGTDCLDAGSDSHLSDSSPSSKSSKKHVSGITLLSPKHKYKSGIKSTETQPSSTTPK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 CGHYPEESEDTVTDVSPLSTPDISPLQSFELGIANDQKVKIKKQENVSQEIYEDVEDLKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 CGHYPEESEDTVTDVSPLSTPDISPLQSFELGIANDQKVKIKKQENVSQEIYEDVEDLKN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 NSKYLKAAKKGKEKHEPDVSSKSSSVLDSSLDHRHKQKVLHDTMDLNHLLKAFLQLDKKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NSKYLKAAKKGKEKHEPDVSSKSSSVLDSSLDHRHKQKVLHDTMDLNHLLKAFLQLDKKG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 PQKHHFDQPSVAPGKNYSFTREEVRQIDRENQRLLKELSRQAEKPGSKSTIPRSADHPPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PQKHHFDQPSVAPGKNYSFTREEVRQIDRENQRLLKELSRQAEKPGSKSTIPRSADHPPK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 LYHSALNRQKEQQRIERENLALLKRLEAVKPTVGMKRSEQLMDYHRNMGYLNSSPLSRRA
       ::::::::::::::::::::..                                      
CCDS75 LYHSALNRQKEQQRIERENLTISLCHPGWSAVT                           
              430       440       450                              




532 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:04:20 2016 done: Thu Nov  3 11:04:20 2016
 Total Scan time:  3.810 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]