Result of FASTA (ccds) for
pF1KA1426
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1426, 1065 aa
1>>>pF1KA1426 1065 - 1065 aa - 1065 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.0251+/-0.00101; mu= -3.1313+/- 0.061
mean_var=299.4950+/-58.954, 0's: 0 Z-trim(114.6): 21 B-trim: 0 in 0/54
Lambda= 0.074110
statistics sampled from 15188 (15199) to 15188 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.467), width: 16
Scan time: 6.240
The best scores are: opt bits E(32554)
CCDS10440.2 CRAMP1 gene_id:57585|Hs108|chr16 (1269) 7159 779.6 0
>>CCDS10440.2 CRAMP1 gene_id:57585|Hs108|chr16 (1269 aa)
initn: 7159 init1: 7159 opt: 7159 Z-score: 4149.0 bits: 779.6 E(32554): 0
Smith-Waterman score: 7159; 99.8% identity (99.8% similar) in 1065 aa overlap (1-1065:205-1269)
10 20 30
pF1KA1 MVKNKEQVRHFYYRTWHKITKYIDFDHVFS
::::::::::::::::::::::::::::::
CCDS10 FEGLYEHGKDFEAIQNNIALKYKKKGKPASMVKNKEQVRHFYYRTWHKITKYIDFDHVFS
180 190 200 210 220 230
40 50 60 70 80 90
pF1KA1 RGLKKSSQELYDLICYGELRKKIGGCMDDKNATKLNELIQVGATTVRYKGRNLRIKAPMC
::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RGLKKSSQELYGLICYGELRKKIGGCMDDKNATKLNELIQVGATTVRYKGRNLRIKAPMC
240 250 260 270 280 290
100 110 120 130 140 150
pF1KA1 RALKKLCDPDGLSDEEDQKPVRLPLKVPIELQPRNNHAWARVQSLAQNPRLRMIVELHRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RALKKLCDPDGLSDEEDQKPVRLPLKVPIELQPRNNHAWARVQSLAQNPRLRMIVELHRK
300 310 320 330 340 350
160 170 180 190 200 210
pF1KA1 VSSLIEFLKQKWALHEVRVRKTLEERQLQDSCSAPMQEKVTLHLFPGENCTLTPLPGVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VSSLIEFLKQKWALHEVRVRKTLEERQLQDSCSAPMQEKVTLHLFPGENCTLTPLPGVAR
360 370 380 390 400 410
220 230 240 250 260 270
pF1KA1 VVHSKAFCTVHWQEGGRCKQSAKDAHVLPPAQILGIQSGQGTARGQVKCPRSGAEGKGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VVHSKAFCTVHWQEGGRCKQSAKDAHVLPPAQILGIQSGQGTARGQVKCPRSGAEGKGVG
420 430 440 450 460 470
280 290 300 310 320 330
pF1KA1 RPPPAADALQSSGESSPESAPGEGAALSSSSPDAPDRPPPRHQDTGPCLEKTPAEGRDSP
:::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::
CCDS10 RPPPAADALQSSGESSPESAPGEGAALSLSSPDAPDRPPPRHQDTGPCLEKTPAEGRDSP
480 490 500 510 520 530
340 350 360 370 380 390
pF1KA1 TREPGALPCACGQLPDLEDELSLLDPLPRYLKSCQDLIVPEQCRCADTRPGSEQPPLGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TREPGALPCACGQLPDLEDELSLLDPLPRYLKSCQDLIVPEQCRCADTRPGSEQPPLGGA
540 550 560 570 580 590
400 410 420 430 440 450
pF1KA1 ASPEVLAPVSKEAADLAPTGPSPRPGPGLLLDVCTKDLADAPAEELQEKGSPAGPPPSQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ASPEVLAPVSKEAADLAPTGPSPRPGPGLLLDVCTKDLADAPAEELQEKGSPAGPPPSQG
600 610 620 630 640 650
460 470 480 490 500 510
pF1KA1 QPAARPPKEVPASRLAQQLREEGWNLQTSESLTLAEVYLMMGKPSKLQLEYDWLGPGRQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QPAARPPKEVPASRLAQQLREEGWNLQTSESLTLAEVYLMMGKPSKLQLEYDWLGPGRQD
660 670 680 690 700 710
520 530 540 550 560 570
pF1KA1 PRPGSLPTALHKQRLLSCLLKLISTEVNPKLALEANTISTASVRPAQEEQSMTPPGKVVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PRPGSLPTALHKQRLLSCLLKLISTEVNPKLALEANTISTASVRPAQEEQSMTPPGKVVT
720 730 740 750 760 770
580 590 600 610 620 630
pF1KA1 VSSRSPRCPRNQASLRSSKTFPPSSAPCSSGLRNPPRPLLVPGPSSTGSNDSDGGLFAVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VSSRSPRCPRNQASLRSSKTFPPSSAPCSSGLRNPPRPLLVPGPSSTGSNDSDGGLFAVP
780 790 800 810 820 830
640 650 660 670 680 690
pF1KA1 TTLPPNSRHGKLFSPSKEAELTFRQHLNSISMQSDFFLPKPRKLRNRHLRKPLVVQRTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TTLPPNSRHGKLFSPSKEAELTFRQHLNSISMQSDFFLPKPRKLRNRHLRKPLVVQRTLL
840 850 860 870 880 890
700 710 720 730 740 750
pF1KA1 PRPSENQSHNVCSFSILSNSSVTGRGSFRPIQSSLTKAALSRPIVPKVLPPQATSHLASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PRPSENQSHNVCSFSILSNSSVTGRGSFRPIQSSLTKAALSRPIVPKVLPPQATSHLASA
900 910 920 930 940 950
760 770 780 790 800 810
pF1KA1 IDLAATSAGILSGNPLPALDTEGLSGISPLSSDEVTGAISGQDSTGTHQDGDTLPTVGGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IDLAATSAGILSGNPLPALDTEGLSGISPLSSDEVTGAISGQDSTGTHQDGDTLPTVGGS
960 970 980 990 1000 1010
820 830 840 850 860 870
pF1KA1 DPFVSIPSRPEQEPVADSFQGSSVLSLSELPKAPLQNGLSIPLSSSESSSTRLSPPDVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DPFVSIPSRPEQEPVADSFQGSSVLSLSELPKAPLQNGLSIPLSSSESSSTRLSPPDVSA
1020 1030 1040 1050 1060 1070
880 890 900 910 920 930
pF1KA1 LLDISLPGPPEDALSQGEPATHISDSIIEIAISSGQYGEGVPLSPAKLNGSDSSKSLPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LLDISLPGPPEDALSQGEPATHISDSIIEIAISSGQYGEGVPLSPAKLNGSDSSKSLPSP
1080 1090 1100 1110 1120 1130
940 950 960 970 980 990
pF1KA1 SSSPQPHWIASPTHDPQWYPSDSTDSSLSSLFASFISPEKSRKMLPTPIGTNSGTSLLGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSSPQPHWIASPTHDPQWYPSDSTDSSLSSLFASFISPEKSRKMLPTPIGTNSGTSLLGP
1140 1150 1160 1170 1180 1190
1000 1010 1020 1030 1040 1050
pF1KA1 SLLDGNSRDSFVSRSLADVAEVVDSQLVCMMNENSIDYISRFNDLAQELSIAEPGRREAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SLLDGNSRDSFVSRSLADVAEVVDSQLVCMMNENSIDYISRFNDLAQELSIAEPGRREAL
1200 1210 1220 1230 1240 1250
1060
pF1KA1 FDGGGGGPAVSDLSQ
:::::::::::::::
CCDS10 FDGGGGGPAVSDLSQ
1260
1065 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 11:03:40 2016 done: Thu Nov 3 11:03:41 2016
Total Scan time: 6.240 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]