Result of FASTA (ccds) for
pF1KA1385
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1385, 736 aa
1>>>pF1KA1385 736 - 736 aa - 736 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.0902+/-0.000859; mu= 2.5234+/- 0.052
mean_var=147.0212+/-29.314, 0's: 0 Z-trim(112.1): 9 B-trim: 7 in 2/50
Lambda= 0.105775
statistics sampled from 12936 (12938) to 12936 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.397), width: 16
Scan time: 4.110
The best scores are: opt bits E(32554)
CCDS32103.1 GPHN gene_id:10243|Hs108|chr14 ( 736) 4851 751.9 7.8e-217
CCDS9777.1 GPHN gene_id:10243|Hs108|chr14 ( 769) 3259 509.0 1.1e-143
>>CCDS32103.1 GPHN gene_id:10243|Hs108|chr14 (736 aa)
initn: 4851 init1: 4851 opt: 4851 Z-score: 4006.4 bits: 751.9 E(32554): 7.8e-217
Smith-Waterman score: 4851; 100.0% identity (100.0% similar) in 736 aa overlap (1-736:1-736)
10 20 30 40 50 60
pF1KA1 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 DELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 AAKIPDSIISRGVQVLPRDTASLSTTPSESPRAQATSRLSTASCPTPKVQSRCSSKENIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AAKIPDSIISRGVQVLPRDTASLSTTPSESPRAQATSRLSTASCPTPKVQSRCSSKENIL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 RASHSAVDITKVARRHRMSPFPLTSMDKAFITVLEMTPVLGTEIINYRDGMGRVLAQDVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RASHSAVDITKVARRHRMSPFPLTSMDKAFITVLEMTPVLGTEIINYRDGMGRVLAQDVY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 AKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 ADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 EIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 TINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 MKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKAR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 LSCDVKLDPRPEYHRCILTWHHQEPLPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LSCDVKLDPRPEYHRCILTWHHQEPLPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYV
670 680 690 700 710 720
730
pF1KA1 ELHKGEVVDVMVIGRL
::::::::::::::::
CCDS32 ELHKGEVVDVMVIGRL
730
>>CCDS9777.1 GPHN gene_id:10243|Hs108|chr14 (769 aa)
initn: 4926 init1: 3259 opt: 3259 Z-score: 2693.1 bits: 509.0 E(32554): 1.1e-143
Smith-Waterman score: 4768; 95.7% identity (95.7% similar) in 768 aa overlap (2-736:2-769)
10 20 30 40 50 60
pF1KA1 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 DELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 DELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAI
190 200 210 220 230 240
250 260
pF1KA1 AAK---------------------------------IPDSIISRGVQVLPRDTASLSTTP
::: ::::::::::::::::::::::::
CCDS97 AAKKHPFYTSPAVVMAHGEQPIPGLINYSHHSTDERIPDSIISRGVQVLPRDTASLSTTP
250 260 270 280 290 300
270 280 290 300 310 320
pF1KA1 SESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAVDITKVARRHRMSPFPLTSMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAVDITKVARRHRMSPFPLTSMD
310 320 330 340 350 360
330 340 350 360 370 380
pF1KA1 KAFITVLEMTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 KAFITVLEMTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDR
370 380 390 400 410 420
390 400 410 420 430 440
pF1KA1 FIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 FIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRI
430 440 450 460 470 480
450 460 470 480 490 500
pF1KA1 LVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 LVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTG
490 500 510 520 530 540
510 520 530 540 550 560
pF1KA1 NELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 NELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADV
550 560 570 580 590 600
570 580 590 600 610 620
pF1KA1 IITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 IITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGN
610 620 630 640 650 660
630 640 650 660 670 680
pF1KA1 PVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 PVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEPLP
670 680 690 700 710 720
690 700 710 720 730
pF1KA1 WAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 WAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL
730 740 750 760
736 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 21:07:29 2016 done: Wed Nov 2 21:07:29 2016
Total Scan time: 4.110 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]