FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1381, 980 aa
  1>>>pF1KA1381 980 - 980 aa - 980 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8849+/-0.000387; mu= 19.2446+/- 0.024
 mean_var=85.6312+/-16.739, 0's: 0 Z-trim(113.7): 21  B-trim: 35 in 1/54
 Lambda= 0.138598
 statistics sampled from 23162 (23171) to 23162 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.272), width:  16
 Scan time: 13.860

The best scores are:                                      opt bits E(85289)
NP_061184 (OMIM: 606973,611209) conserved oligomer ( 980) 6382 1286.7       0


>>NP_061184 (OMIM: 606973,611209) conserved oligomeric G  (980 aa)
 initn: 6382 init1: 6382 opt: 6382  Z-score: 6892.3  bits: 1286.7 E(85289):    0
Smith-Waterman score: 6382; 99.9% identity (99.9% similar) in 980 aa overlap (1-980:1-980)

               10        20        30        40        50        60
pF1KA1 MATAATSPALKRLDLRDPAALFETHGAEEIRGLERQVRAEIEHKKEELRQMVGERYRDLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MATAATSPALKRLDLRDPAALFETHGAEEIRGLERQVRAEIEHKKEELRQMVGERYRDLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 EAADTIGQMRRCAVGLVDAVKATDQYCARLRQAGSAAPRPPRAQQPQQPSQEKFYSMAAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EAADTIGQMRRCAVGLVDAVKATDQYCARLRQAGSAAPRPPRAQQPQQPSQEKFYSMAAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 IKLLLEIPEKIWSSMEASQCLHATQLYLLCCHLHSLLQLDSSSSRYSPVLSRFPILIRQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 IKLLLEIPEKIWSSMEASQCLHATQLYLLCCHLHSLLQLDSSSSRYSPVLSRFPILIRQV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 AAASHFRSTILHESKMLLKCQGVSDQAVAEALCSIMLLEESSPRQALTDFLLARKATIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 AAASHFRSTILHESKMLLKCQGVSDQAVAEALCSIMLLEESSPRQALTDFLLARKATIQK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 LLNQPHHGAGIKAQICSLVELLATTLKQAHALFYTLPEGLLPDPALPCGLLFSTLETITG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 LLNQPHHGAGIKAQICSLVELLATTLKQAHALFYTLPEGLLPDPALPCGLLFSTLETITG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 QHPAGKGTGVLQEEMKLCSWFKHLPASIVEFQPTLRTLAHPISQEYLKDTLQKWIHMCNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QHPAGKGTGVLQEEMKLCSWFKHLPASIVEFQPTLRTLAHPISQEYLKDTLQKWIHMCNE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 DIKNGITNLLMYVKSMKGLAGIPDAMWELLTNESTNHSWDVLCRRLLEKPLLFWEDMMQQ
       :::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
NP_061 DIKNGITNLLMYVKSMKGLAGIRDAMWELLTNESTNHSWDVLCRRLLEKPLLFWEDMMQQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 LFLDRLQTLTKEGFDSISSSSKELLVSALQELESSTSNSPSNKHIHFEYNMSLFLWSESP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 LFLDRLQTLTKEGFDSISSSSKELLVSALQELESSTSNSPSNKHIHFEYNMSLFLWSESP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 NDLPSDAAWVSVANRGQFASSGLSMKAQAISPCVQNFCSALDSKLKVKLDDLLAYLPSDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 NDLPSDAAWVSVANRGQFASSGLSMKAQAISPCVQNFCSALDSKLKVKLDDLLAYLPSDD
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 SSLPKDVSPTQAKSSAFDRYADAGTVQEMLRTQSVACIKHIVDCIRAELQSIEEGVQGQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SSLPKDVSPTQAKSSAFDRYADAGTVQEMLRTQSVACIKHIVDCIRAELQSIEEGVQGQQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 DALNSAKLHSVLFMARLCQSLGELCPHLKQCILGKSESSEKPAREFRALRKQGKVKTQEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DALNSAKLHSVLFMARLCQSLGELCPHLKQCILGKSESSEKPAREFRALRKQGKVKTQEI
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 IPTQAKWQEVKEVLLQQSVMGYQVWSSAVVKVLIHGFTQSLLLDDAGSVLATATSWDELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 IPTQAKWQEVKEVLLQQSVMGYQVWSSAVVKVLIHGFTQSLLLDDAGSVLATATSWDELE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 IQEEAESGSSVTSKIRLPAQPSWYVQSFLFSLCQEINRVGGHALPKVTLQEMLKSCMVQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 IQEEAESGSSVTSKIRLPAQPSWYVQSFLFSLCQEINRVGGHALPKVTLQEMLKSCMVQV
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 VAAYEKLSEEKQIKKEGAFPVTQNRALQLLYDLRYLNIVLTAKGDEVKSGRSKPDSRIEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VAAYEKLSEEKQIKKEGAFPVTQNRALQLLYDLRYLNIVLTAKGDEVKSGRSKPDSRIEK
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 VTDHLEALIDPFDLDVFTPHLNSNLHRLVQRTSVLFGLVTGTENQLAPRSSTFNSQEPHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VTDHLEALIDPFDLDVFTPHLNSNLHRLVQRTSVLFGLVTGTENQLAPRSSTFNSQEPHN
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 ILPLASSQIRFGLLPLSMTSTRKAKSTRNIETKAQVVPPARSTAGDPTVPGSLFRQLVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ILPLASSQIRFGLLPLSMTSTRKAKSTRNIETKAQVVPPARSTAGDPTVPGSLFRQLVSE
              910       920       930       940       950       960

              970       980
pF1KA1 EDNTSAPSLFKLGWLSSMTK
       ::::::::::::::::::::
NP_061 EDNTSAPSLFKLGWLSSMTK
              970       980




980 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:31:30 2016 done: Fri Nov  4 01:31:32 2016
 Total Scan time: 13.860 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]