FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1373, 461 aa
  1>>>pF1KA1373 461 - 461 aa - 461 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7525+/-0.00112; mu= 5.8100+/- 0.066
 mean_var=128.5889+/-25.730, 0's: 0 Z-trim(106.0): 34  B-trim: 0 in 0/51
 Lambda= 0.113103
 statistics sampled from 8750 (8758) to 8750 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.269), width:  16
 Scan time:  2.530

The best scores are:                                      opt bits E(32554)
CCDS7391.1 STAMBPL1 gene_id:57559|Hs108|chr10      ( 436) 2778 465.0 6.9e-131
CCDS1929.1 STAMBP gene_id:10617|Hs108|chr2         ( 424) 1573 268.4   1e-71


>>CCDS7391.1 STAMBPL1 gene_id:57559|Hs108|chr10           (436 aa)
 initn: 2778 init1: 2778 opt: 2778  Z-score: 2463.4  bits: 465.0 E(32554): 6.9e-131
Smith-Waterman score: 2778; 99.8% identity (99.8% similar) in 421 aa overlap (1-421:1-421)

               10        20        30        40        50        60
pF1KA1 MDQPFTVNSLKKLAAMPDHTDVSLSPEERVRALSKLGCNITISEDITPRRYFRSGVEMER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MDQPFTVNSLKKLAAMPDHTDVSLSPEERVRALSKLGCNITISEDITPRRYFRSGVEMER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 MASVYLEEGNLENAFVLYNKFITLFVEKLPNHRDYQQCAVPEKQDIMKKLKEIAFPRTDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MASVYLEEGNLENAFVLYNKFITLFVEKLPNHRDYQQCAVPEKQDIMKKLKEIAFPRTDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 LKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQFLFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQFLFF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 EDQLKKQELARGQMRSQQTSGLSEQIDGSALSCFSTHQNNSLLNVFADQPNKSDATNYAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EDQLKKQELARGQMRSQQTSGLSEQIDGSALSCFSTHQNNSLLNVFADQPNKSDATNYAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 HSPPVNRALTPAATLSAVQNLVVEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HSPPVNRALTPAATLSAVQNLVVEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 LTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIHTHPTQTAFLSSVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIHTHPTQTAFLSSVD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 LHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSACKKKGFHPHTKEPRLFSIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS73 LHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSACKKKGFHPHTKEPRLFSIC
              370       380       390       400       410       420

              430       440       450       460 
pF1KA1 KFLSGIISGTALEMEPLKIGYGPNGFPLLGISRSSSPSEQL
       :                                        
CCDS73 KHVLVKDIKIIVLDLR                         
              430                               

>>CCDS1929.1 STAMBP gene_id:10617|Hs108|chr2              (424 aa)
 initn: 1619 init1: 866 opt: 1573  Z-score: 1400.9  bits: 268.4 E(32554): 1e-71
Smith-Waterman score: 1573; 56.8% identity (79.9% similar) in 412 aa overlap (16-417:1-405)

               10        20        30        40        50        60
pF1KA1 MDQPFTVNSLKKLAAMPDHTDVSLSPEERVRALSKLGCNITISEDITPRRYFRSGVEMER
                      : :: :::: ::.::::::.::  . ..::: ::::::::::. :
CCDS19                MSDHGDVSLPPEDRVRALSQLGSAVEVNEDIPPRRYFRSGVEIIR
                              10        20        30        40     

               70        80        90       100       110       120
pF1KA1 MASVYLEEGNLENAFVLYNKFITLFVEKLPNHRDYQQCAVPEKQDIMKKLKEIAFPRTDE
       :::.: ::::.:.::.::::.::::.::::.::::.. ..:::.: .:::::::::...:
CCDS19 MASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEE
          50        60        70        80        90       100     

              130       140       150       160       170       180
pF1KA1 LKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQFLFF
       :: .:::.:. :: :: . :.:   :. ...  :. .: :..:.::..:::::.:::  :
CCDS19 LKAELLKRYTKEYTEYNEEKKKEAEELARNMAIQQELEKEKQRVAQQKQQQLEQEQFHAF
         110       120       130       140       150       160     

              190       200                210       220       230 
pF1KA1 EDQLKKQELARGQMRSQQTSG---------LSEQIDGSALSCFSTHQNNSLLNVFADQPN
       :.....::: . ...  :  :         :  ...  .:. : :      :.: . ::.
CCDS19 EEMIRNQELEKERLKIVQEFGKVDPGLGGPLVPDLEKPSLDVFPT------LTVSSIQPS
         170       180       190       200       210               

             240       250       260        270       280       290
pF1KA1 KSDATNYASHSPPVNRALTPAATLSAVQNL-VVEGLRCVVLPEDLCHKFLQLAESNTVRG
          .:   .. : :.:.: :.: ::  ... ...::: ::.:  :: .::::: .::.::
CCDS19 DCHTTVRPAKPPVVDRSLKPGA-LSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARG
     220       230       240        250       260       270        

              300       310       320       330       340       350
pF1KA1 IETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIHTHP
       .:::::::::: .::::::::..:::::: :::. :: :::: .:::. :.:::::::::
CCDS19 VETCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHTHP
      280       290       300       310       320       330        

              360       370       380       390       400       410
pF1KA1 TQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSACKKKGFHPH
       ::::::::::::::::::.::::..::::::: ..::.:.::. :. :.:.:..::::::
CCDS19 TQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQETGFFKLTDHGLEEISSCRQKGFHPH
      340       350       360       370       380       390        

              420       430       440       450       460 
pF1KA1 TKEPRLFSIQKFLSGIISGTALEMEPLKIGYGPNGFPLLGISRSSSPSEQL
       .:.: ::                                            
CCDS19 SKDPPLFCSCSHVTVVDRAVTITDLR                         
      400       410       420                             




461 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:04:58 2016 done: Wed Nov  2 21:04:59 2016
 Total Scan time:  2.530 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]