Result of FASTA (ccds) for
pF1KA1370
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1370, 1076 aa
1>>>pF1KA1370 1076 - 1076 aa - 1076 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3159+/-0.00114; mu= 11.7753+/- 0.069
mean_var=97.8980+/-19.148, 0's: 0 Z-trim(104.5): 35 B-trim: 0 in 0/49
Lambda= 0.129625
statistics sampled from 7934 (7954) to 7934 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.244), width: 16
Scan time: 4.060
The best scores are: opt bits E(32554)
CCDS45263.1 FAM214A gene_id:56204|Hs108|chr15 (1076) 7179 1353.8 0
CCDS66773.1 FAM214A gene_id:56204|Hs108|chr15 (1083) 7141 1346.7 0
CCDS6578.1 FAM214B gene_id:80256|Hs108|chr9 ( 538) 836 167.5 6.9e-41
>>CCDS45263.1 FAM214A gene_id:56204|Hs108|chr15 (1076 aa)
initn: 7179 init1: 7179 opt: 7179 Z-score: 7253.1 bits: 1353.8 E(32554): 0
Smith-Waterman score: 7179; 99.9% identity (100.0% similar) in 1076 aa overlap (1-1076:1-1076)
10 20 30 40 50 60
pF1KA1 MKPDRDTLDEYFEYDAEEFLVSLALLITEGRTPECSVKGRTESFHCPPAQSCYPVTTKHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MKPDRDTLDEYFEYDAEEFLVSLALLITEGRTPECSVKGRTESFHCPPAQSCYPVTTKHE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 CSDKLAQCRQARRTRSEVTLLWKNNLPIMVEMMLLPDCCYSDDGPTTEGIDLNDPAIKQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CSDKLAQCRQARRTRSEVTLLWKNNLPIMVEMMLLPDCCYSDDGPTTEGIDLNDPAIKQD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 ALLLERWILEPVPRQNGDRFIEEKTLLLAVRSFVFFSQLSAWLSVSHGAIPRNILYRISA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ALLLERWILEPVPRQNGDRFIEEKTLLLAVRSFVFFSQLSAWLSVSHGAIPRNILYRISA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 ADVDLQWNFSQTPIEHVFPVPNVSHNVALKVSVQSLPRQSNYPVLTCSIHTNIGLYEKRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ADVDLQWNFSQTPIEHVFPVPNVSHNVALKVSVQSLPRQSNYPVLTCSIHTNIGLYEKRI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 QQHKLKTHQHHNPNEAEQCGTNSSQRLCSKQTWTMAPESVLHAKSGPSPEYTAAVKNIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QQHKLKTHQHHNPNEAEQCGTNSSQRLCSKQTWTMAPESVLHAKSGPSPEYTAAVKNIKL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 YPGTGSKSDHGTSQANILGFSGIGDIKSQETSVRTLKSFSMVDSSISNRQSFWQSAGETN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YPGTGSKSDHGTSQANILGFSGIGDIKSQETSVRTLKSFSMVDSSISNRQSFWQSAGETN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 PLIGSLIQERQEIIARIAQHLIHCDPSTSHVSGRPFNTQESSSLHSKLFRVSQENENVGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PLIGSLIQERQEIIARIAQHLIHCDPSTSHVSGRPFNTQESSSLHSKLFRVSQENENVGK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 GKEAFSMTFGSPEFSSPEDTNEGKIRLKPETPRSETCISNDFYSHMPVGETNPLIGSLLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GKEAFSMTFGSPEFSSPEDTNEGKIRLKPETPRSETCISNDFYSHMPVGETNPLIGSLLQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 ERQDVIARIAQHLEHIDPTASHIPRQSFNMHDSSSVASKVFRSSYEDKNLLKKNKDESSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ERQDVIARIAQHLEHIDPTASHIPRQSFNMHDSSSVASKVFRSSYEDKNLLKKNKDESSV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 SISHTKCSLLGDISDGKNLIPNKCFTSFKNNSKEKCSLKHQTRNQCQNNPSEIIQSTYQE
:::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS45 SISHTKCSLLGDISDGKNLVPNKCFTSFKNNSKEKCSLKHQTRNQCQNNPSEIIQSTYQE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 TQNKSSSLSTSSILSQHKENNLDLTSRFKEQEMSNGIDKQYSNCTTIDKQICTNKYKEKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TQNKSSSLSTSSILSQHKENNLDLTSRFKEQEMSNGIDKQYSNCTTIDKQICTNKYKEKI
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 INENYNPKFFGNLQSDDSKKNDSKIKVTVLEMSEYLNKYESMSSNKDSKRPKTCEQNTQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 INENYNPKFFGNLQSDDSKKNDSKIKVTVLEMSEYLNKYESMSSNKDSKRPKTCEQNTQL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 NSIENYLNKDNEGFKCKKSDQLKNEQDKQEDPTNEKSQNYSQRRSIKDCLSTCEQPKNTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NSIENYLNKDNEGFKCKKSDQLKNEQDKQEDPTNEKSQNYSQRRSIKDCLSTCEQPKNTE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 VLRTTLKHSNVWRKHNFHSLDGTSTRAFHPQTGLPLLSSPVPQRKTQSGCFDLDSSLLHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VLRTTLKHSNVWRKHNFHSLDGTSTRAFHPQTGLPLLSSPVPQRKTQSGCFDLDSSLLHL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 KSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLLGNFEESVLNYRFDPLGIVDGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLLGNFEESVLNYRFDPLGIVDGF
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 TAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPPSGTIQVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPPSGTIQVT
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 LFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVKQEVKRSVNKENIRHTEERLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVKQEVKRSVNKENIRHTEERLLR
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070
pF1KA1 YLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYELKSYTESPTNPQFSPRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYELKSYTESPTNPQFSPRC
1030 1040 1050 1060 1070
>>CCDS66773.1 FAM214A gene_id:56204|Hs108|chr15 (1083 aa)
initn: 7141 init1: 7141 opt: 7141 Z-score: 7214.7 bits: 1346.7 E(32554): 0
Smith-Waterman score: 7141; 99.9% identity (100.0% similar) in 1071 aa overlap (6-1076:13-1083)
10 20 30 40 50
pF1KA1 MKPDRDTLDEYFEYDAEEFLVSLALLITEGRTPECSVKGRTESFHCPPAQSCY
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MVFSGNKGLHREDTLDEYFEYDAEEFLVSLALLITEGRTPECSVKGRTESFHCPPAQSCY
10 20 30 40 50 60
60 70 80 90 100 110
pF1KA1 PVTTKHECSDKLAQCRQARRTRSEVTLLWKNNLPIMVEMMLLPDCCYSDDGPTTEGIDLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 PVTTKHECSDKLAQCRQARRTRSEVTLLWKNNLPIMVEMMLLPDCCYSDDGPTTEGIDLN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KA1 DPAIKQDALLLERWILEPVPRQNGDRFIEEKTLLLAVRSFVFFSQLSAWLSVSHGAIPRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 DPAIKQDALLLERWILEPVPRQNGDRFIEEKTLLLAVRSFVFFSQLSAWLSVSHGAIPRN
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA1 ILYRISAADVDLQWNFSQTPIEHVFPVPNVSHNVALKVSVQSLPRQSNYPVLTCSIHTNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ILYRISAADVDLQWNFSQTPIEHVFPVPNVSHNVALKVSVQSLPRQSNYPVLTCSIHTNI
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA1 GLYEKRIQQHKLKTHQHHNPNEAEQCGTNSSQRLCSKQTWTMAPESVLHAKSGPSPEYTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GLYEKRIQQHKLKTHQHHNPNEAEQCGTNSSQRLCSKQTWTMAPESVLHAKSGPSPEYTA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KA1 AVKNIKLYPGTGSKSDHGTSQANILGFSGIGDIKSQETSVRTLKSFSMVDSSISNRQSFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 AVKNIKLYPGTGSKSDHGTSQANILGFSGIGDIKSQETSVRTLKSFSMVDSSISNRQSFW
310 320 330 340 350 360
360 370 380 390 400 410
pF1KA1 QSAGETNPLIGSLIQERQEIIARIAQHLIHCDPSTSHVSGRPFNTQESSSLHSKLFRVSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 QSAGETNPLIGSLIQERQEIIARIAQHLIHCDPSTSHVSGRPFNTQESSSLHSKLFRVSQ
370 380 390 400 410 420
420 430 440 450 460 470
pF1KA1 ENENVGKGKEAFSMTFGSPEFSSPEDTNEGKIRLKPETPRSETCISNDFYSHMPVGETNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ENENVGKGKEAFSMTFGSPEFSSPEDTNEGKIRLKPETPRSETCISNDFYSHMPVGETNP
430 440 450 460 470 480
480 490 500 510 520 530
pF1KA1 LIGSLLQERQDVIARIAQHLEHIDPTASHIPRQSFNMHDSSSVASKVFRSSYEDKNLLKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LIGSLLQERQDVIARIAQHLEHIDPTASHIPRQSFNMHDSSSVASKVFRSSYEDKNLLKK
490 500 510 520 530 540
540 550 560 570 580 590
pF1KA1 NKDESSVSISHTKCSLLGDISDGKNLIPNKCFTSFKNNSKEKCSLKHQTRNQCQNNPSEI
::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS66 NKDESSVSISHTKCSLLGDISDGKNLVPNKCFTSFKNNSKEKCSLKHQTRNQCQNNPSEI
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA1 IQSTYQETQNKSSSLSTSSILSQHKENNLDLTSRFKEQEMSNGIDKQYSNCTTIDKQICT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IQSTYQETQNKSSSLSTSSILSQHKENNLDLTSRFKEQEMSNGIDKQYSNCTTIDKQICT
610 620 630 640 650 660
660 670 680 690 700 710
pF1KA1 NKYKEKIINENYNPKFFGNLQSDDSKKNDSKIKVTVLEMSEYLNKYESMSSNKDSKRPKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 NKYKEKIINENYNPKFFGNLQSDDSKKNDSKIKVTVLEMSEYLNKYESMSSNKDSKRPKT
670 680 690 700 710 720
720 730 740 750 760 770
pF1KA1 CEQNTQLNSIENYLNKDNEGFKCKKSDQLKNEQDKQEDPTNEKSQNYSQRRSIKDCLSTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 CEQNTQLNSIENYLNKDNEGFKCKKSDQLKNEQDKQEDPTNEKSQNYSQRRSIKDCLSTC
730 740 750 760 770 780
780 790 800 810 820 830
pF1KA1 EQPKNTEVLRTTLKHSNVWRKHNFHSLDGTSTRAFHPQTGLPLLSSPVPQRKTQSGCFDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EQPKNTEVLRTTLKHSNVWRKHNFHSLDGTSTRAFHPQTGLPLLSSPVPQRKTQSGCFDL
790 800 810 820 830 840
840 850 860 870 880 890
pF1KA1 DSSLLHLKSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLLGNFEESVLNYRFDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 DSSLLHLKSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLLGNFEESVLNYRFDP
850 860 870 880 890 900
900 910 920 930 940 950
pF1KA1 LGIVDGFTAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LGIVDGFTAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPP
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KA1 SGTIQVTLFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVKQEVKRSVNKENIRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SGTIQVTLFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVKQEVKRSVNKENIRH
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KA1 TEERLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYELKSYTESPTNPQFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 TEERLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYELKSYTESPTNPQFS
1030 1040 1050 1060 1070 1080
pF1KA1 PRC
:::
CCDS66 PRC
>>CCDS6578.1 FAM214B gene_id:80256|Hs108|chr9 (538 aa)
initn: 847 init1: 570 opt: 836 Z-score: 847.5 bits: 167.5 E(32554): 6.9e-41
Smith-Waterman score: 836; 54.2% identity (76.9% similar) in 225 aa overlap (850-1074:320-536)
820 830 840 850 860 870
pF1KA1 PVPQRKTQSGCFDLDSSLLHLKSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLL
: ... : . : : : .: .::
CCDS65 LPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLL
290 300 310 320 330 340
880 890 900 910 920 930
pF1KA1 GNFEESVLNYRFDPLGIVDGFTAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVI
::::::.: :: : : ..:::::.::::..:: :.:::: :.:..::..:::.:..:..
CCDS65 GNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIV
350 360 370 380 390 400
940 950 960 970 980 990
pF1KA1 TLESLGKRGYRVPPSGTIQVTLFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVK
:. ::..:: :: ::.::::::::.::::::.: .:. :::: :.::::.: : :::
CCDS65 DLNPLGRKGYSVPKVGTVQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVG
410 420 430 440 450 460
1000 1010 1020 1030 1040 1050
pF1KA1 QEVKRSVNKENIRHTEERLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYE
.: .. : : ::: ::.::::.::.::.. :: :.::::::.:.:.:.: ::
CCDS65 EE-----GNANPTH---RLLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYE
470 480 490 500 510 520
1060 1070
pF1KA1 LKSYTESPTNPQFSPRC
:.. ::.: ::..::
CCDS65 LQAVTEAPHNPRYSPLP
530
1076 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:30:53 2016 done: Fri Nov 4 01:30:54 2016
Total Scan time: 4.060 Total Display time: 0.130
Function used was FASTA [36.3.4 Apr, 2011]