Result of FASTA (ccds) for
pF1KA1352
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1352, 1176 aa
1>>>pF1KA1352 1176 - 1176 aa - 1176 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5481+/-0.00104; mu= 21.3295+/- 0.063
mean_var=68.7363+/-13.551, 0's: 0 Z-trim(103.0): 30 B-trim: 0 in 0/51
Lambda= 0.154697
statistics sampled from 7202 (7214) to 7202 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.569), E-opt: 0.2 (0.222), width: 16
Scan time: 4.370
The best scores are: opt bits E(32554)
CCDS34265.1 LARS gene_id:51520|Hs108|chr5 (1176) 7936 1781.1 0
CCDS83029.1 LARS gene_id:51520|Hs108|chr5 (1122) 7582 1702.0 0
>>CCDS34265.1 LARS gene_id:51520|Hs108|chr5 (1176 aa)
initn: 7936 init1: 7936 opt: 7936 Z-score: 9560.8 bits: 1781.1 E(32554): 0
Smith-Waterman score: 7936; 100.0% identity (100.0% similar) in 1176 aa overlap (1-1176:1-1176)
10 20 30 40 50 60
pF1KA1 MAERKGTAKVDFLKKIEKEIQQKWDTERVFEVNASNLEKQTSKGKYFVTFPYPYMNGRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAERKGTAKVDFLKKIEKEIQQKWDTERVFEVNASNLEKQTSKGKYFVTFPYPYMNGRLH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 LGHTFSLSKCEFAVGYQRLKGKCCLFPFGLHCTGMPIKACADKLKREIELYGCPPDFPDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LGHTFSLSKCEFAVGYQRLKGKCCLFPFGLHCTGMPIKACADKLKREIELYGCPPDFPDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 EEEEEETSVKTEDIIIKDKAKGKKSKAAAKAGSSKYQWGIMKSLGLSDEEIVKFSEAEHW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EEEEEETSVKTEDIIIKDKAKGKKSKAAAKAGSSKYQWGIMKSLGLSDEEIVKFSEAEHW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 LDYFPPLAIQDLKRMGLKVDWRRSFITTDVNPYYDSFVRWQFLTLRERNKIKFGKRYTIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LDYFPPLAIQDLKRMGLKVDWRRSFITTDVNPYYDSFVRWQFLTLRERNKIKFGKRYTIY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 SPKDGQPCMDHDRQTGEGVGPQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SPKDGQPCMDHDRQTGEGVGPQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 GQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 SLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 DMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 GFKGQKVQDVKKTIQKKMIDAGDALIYMEPEKQVMSRSSDECVVALCDQWYLDYGEENWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GFKGQKVQDVKKTIQKKMIDAGDALIYMEPEKQVMSRSSDECVVALCDQWYLDYGEENWK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 KQTSQCLKNLETFCEETRRNFEATLGWLQEHACSRTYGLGTHLPWDEQWLIESLSDSTIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KQTSQCLKNLETFCEETRRNFEATLGWLQEHACSRTYGLGTHLPWDEQWLIESLSDSTIY
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 MAFYTVAHLLQGGNLHGQAESPLGIRPQQMTKEVWDYVFFKEAPFPKTQIAKEKLDQLKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAFYTVAHLLQGGNLHGQAESPLGIRPQQMTKEVWDYVFFKEAPFPKTQIAKEKLDQLKQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 EFEFWYPVDLRVSGKDLVPNHLSYYLYNHVAMWPEQSDKWPTAVRANGHLLLNSEKMSKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EFEFWYPVDLRVSGKDLVPNHLSYYLYNHVAMWPEQSDKWPTAVRANGHLLLNSEKMSKS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 TGNFLTLTQAIDKFSADGMRLALADAGDTVEDANFVEAMADAGILRLYTWVEWVKEMVAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TGNFLTLTQAIDKFSADGMRLALADAGDTVEDANFVEAMADAGILRLYTWVEWVKEMVAN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 WDSLRSGPASTFNDRVFASELNAGIIKTDQNYEKMMFKEALKTGFFEFQAAKDKYRELAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 WDSLRSGPASTFNDRVFASELNAGIIKTDQNYEKMMFKEALKTGFFEFQAAKDKYRELAV
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 EGMHRELVFRFIEVQTLLLAPFCPHLCEHIWTLLGKPDSIMNASWPVAGPVNEVLIHSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EGMHRELVFRFIEVQTLLLAPFCPHLCEHIWTLLGKPDSIMNASWPVAGPVNEVLIHSSQ
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 YLMEVTHDLRLRLKNYMMPAKGKKTDKQPLQKPSHCTIYVAKNYPPWQHTTLSVLRKHFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YLMEVTHDLRLRLKNYMMPAKGKKTDKQPLQKPSHCTIYVAKNYPPWQHTTLSVLRKHFE
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 ANNGKLPDNKVIASELGSMPELKKYMKKVMPFVAMIKENLEKMGPRILDLQLEFDEKAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ANNGKLPDNKVIASELGSMPELKKYMKKVMPFVAMIKENLEKMGPRILDLQLEFDEKAVL
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA1 MENIVYLTNSLELEHIEVKFASEAEDKIREDCCPGKPLNVFRIEPGVSVSLVNPQPSNGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MENIVYLTNSLELEHIEVKFASEAEDKIREDCCPGKPLNVFRIEPGVSVSLVNPQPSNGH
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA1 FSTKIEIRQGDNCDSIIRRLMKMNRGIKDLSKVKLMRFDDPLLGPRRVPVLGKEYTEKTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FSTKIEIRQGDNCDSIIRRLMKMNRGIKDLSKVKLMRFDDPLLGPRRVPVLGKEYTEKTP
1090 1100 1110 1120 1130 1140
1150 1160 1170
pF1KA1 ISEHAVFNVDLMSKKIHLTENGIRVDIGDTIIYLVH
::::::::::::::::::::::::::::::::::::
CCDS34 ISEHAVFNVDLMSKKIHLTENGIRVDIGDTIIYLVH
1150 1160 1170
>>CCDS83029.1 LARS gene_id:51520|Hs108|chr5 (1122 aa)
initn: 7582 init1: 7582 opt: 7582 Z-score: 9134.2 bits: 1702.0 E(32554): 0
Smith-Waterman score: 7582; 100.0% identity (100.0% similar) in 1122 aa overlap (55-1176:1-1122)
30 40 50 60 70 80
pF1KA1 DTERVFEVNASNLEKQTSKGKYFVTFPYPYMNGRLHLGHTFSLSKCEFAVGYQRLKGKCC
::::::::::::::::::::::::::::::
CCDS83 MNGRLHLGHTFSLSKCEFAVGYQRLKGKCC
10 20 30
90 100 110 120 130 140
pF1KA1 LFPFGLHCTGMPIKACADKLKREIELYGCPPDFPDEEEEEEETSVKTEDIIIKDKAKGKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LFPFGLHCTGMPIKACADKLKREIELYGCPPDFPDEEEEEEETSVKTEDIIIKDKAKGKK
40 50 60 70 80 90
150 160 170 180 190 200
pF1KA1 SKAAAKAGSSKYQWGIMKSLGLSDEEIVKFSEAEHWLDYFPPLAIQDLKRMGLKVDWRRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SKAAAKAGSSKYQWGIMKSLGLSDEEIVKFSEAEHWLDYFPPLAIQDLKRMGLKVDWRRS
100 110 120 130 140 150
210 220 230 240 250 260
pF1KA1 FITTDVNPYYDSFVRWQFLTLRERNKIKFGKRYTIYSPKDGQPCMDHDRQTGEGVGPQEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 FITTDVNPYYDSFVRWQFLTLRERNKIKFGKRYTIYSPKDGQPCMDHDRQTGEGVGPQEY
160 170 180 190 200 210
270 280 290 300 310 320
pF1KA1 TLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 TLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIF
220 230 240 250 260 270
330 340 350 360 370 380
pF1KA1 ICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVIYVLPMLTIKEDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVIYVLPMLTIKEDK
280 290 300 310 320 330
390 400 410 420 430 440
pF1KA1 GTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVT
340 350 360 370 380 390
450 460 470 480 490 500
pF1KA1 ICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGFKGQKVQDVKKTIQKKMIDAGDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGFKGQKVQDVKKTIQKKMIDAGDA
400 410 420 430 440 450
510 520 530 540 550 560
pF1KA1 LIYMEPEKQVMSRSSDECVVALCDQWYLDYGEENWKKQTSQCLKNLETFCEETRRNFEAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LIYMEPEKQVMSRSSDECVVALCDQWYLDYGEENWKKQTSQCLKNLETFCEETRRNFEAT
460 470 480 490 500 510
570 580 590 600 610 620
pF1KA1 LGWLQEHACSRTYGLGTHLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGNLHGQAESPLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LGWLQEHACSRTYGLGTHLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGNLHGQAESPLG
520 530 540 550 560 570
630 640 650 660 670 680
pF1KA1 IRPQQMTKEVWDYVFFKEAPFPKTQIAKEKLDQLKQEFEFWYPVDLRVSGKDLVPNHLSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 IRPQQMTKEVWDYVFFKEAPFPKTQIAKEKLDQLKQEFEFWYPVDLRVSGKDLVPNHLSY
580 590 600 610 620 630
690 700 710 720 730 740
pF1KA1 YLYNHVAMWPEQSDKWPTAVRANGHLLLNSEKMSKSTGNFLTLTQAIDKFSADGMRLALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 YLYNHVAMWPEQSDKWPTAVRANGHLLLNSEKMSKSTGNFLTLTQAIDKFSADGMRLALA
640 650 660 670 680 690
750 760 770 780 790 800
pF1KA1 DAGDTVEDANFVEAMADAGILRLYTWVEWVKEMVANWDSLRSGPASTFNDRVFASELNAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DAGDTVEDANFVEAMADAGILRLYTWVEWVKEMVANWDSLRSGPASTFNDRVFASELNAG
700 710 720 730 740 750
810 820 830 840 850 860
pF1KA1 IIKTDQNYEKMMFKEALKTGFFEFQAAKDKYRELAVEGMHRELVFRFIEVQTLLLAPFCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 IIKTDQNYEKMMFKEALKTGFFEFQAAKDKYRELAVEGMHRELVFRFIEVQTLLLAPFCP
760 770 780 790 800 810
870 880 890 900 910 920
pF1KA1 HLCEHIWTLLGKPDSIMNASWPVAGPVNEVLIHSSQYLMEVTHDLRLRLKNYMMPAKGKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 HLCEHIWTLLGKPDSIMNASWPVAGPVNEVLIHSSQYLMEVTHDLRLRLKNYMMPAKGKK
820 830 840 850 860 870
930 940 950 960 970 980
pF1KA1 TDKQPLQKPSHCTIYVAKNYPPWQHTTLSVLRKHFEANNGKLPDNKVIASELGSMPELKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 TDKQPLQKPSHCTIYVAKNYPPWQHTTLSVLRKHFEANNGKLPDNKVIASELGSMPELKK
880 890 900 910 920 930
990 1000 1010 1020 1030 1040
pF1KA1 YMKKVMPFVAMIKENLEKMGPRILDLQLEFDEKAVLMENIVYLTNSLELEHIEVKFASEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 YMKKVMPFVAMIKENLEKMGPRILDLQLEFDEKAVLMENIVYLTNSLELEHIEVKFASEA
940 950 960 970 980 990
1050 1060 1070 1080 1090 1100
pF1KA1 EDKIREDCCPGKPLNVFRIEPGVSVSLVNPQPSNGHFSTKIEIRQGDNCDSIIRRLMKMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 EDKIREDCCPGKPLNVFRIEPGVSVSLVNPQPSNGHFSTKIEIRQGDNCDSIIRRLMKMN
1000 1010 1020 1030 1040 1050
1110 1120 1130 1140 1150 1160
pF1KA1 RGIKDLSKVKLMRFDDPLLGPRRVPVLGKEYTEKTPISEHAVFNVDLMSKKIHLTENGIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 RGIKDLSKVKLMRFDDPLLGPRRVPVLGKEYTEKTPISEHAVFNVDLMSKKIHLTENGIR
1060 1070 1080 1090 1100 1110
1170
pF1KA1 VDIGDTIIYLVH
::::::::::::
CCDS83 VDIGDTIIYLVH
1120
1176 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 11:02:06 2016 done: Thu Nov 3 11:02:07 2016
Total Scan time: 4.370 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]