Result of FASTA (omim) for
pF1KA1333
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1333, 706 aa
1>>>pF1KA1333 706 - 706 aa - 706 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7272+/-0.000398; mu= 18.5484+/- 0.025
mean_var=90.0127+/-18.585, 0's: 0 Z-trim(113.2): 99 B-trim: 0 in 0/50
Lambda= 0.135183
statistics sampled from 22264 (22366) to 22264 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.262), width: 16
Scan time: 11.030
The best scores are: opt bits E(85289)
NP_060239 (OMIM: 611299) G2/M phase-specific E3 ub ( 706) 4894 965.2 0
XP_011535227 (OMIM: 611299) PREDICTED: G2/M phase- ( 706) 4894 965.2 0
NP_001295026 (OMIM: 611299) G2/M phase-specific E3 ( 660) 4551 898.3 0
XP_011535228 (OMIM: 611299) PREDICTED: G2/M phase- ( 667) 3065 608.5 2.7e-173
NP_001015877 (OMIM: 300414,301900) PHD finger prot ( 365) 295 68.1 7.1e-11
NP_115834 (OMIM: 300414,301900) PHD finger protein ( 365) 295 68.1 7.1e-11
NP_115711 (OMIM: 300414,301900) PHD finger protein ( 312) 290 67.0 1.2e-10
NP_001035534 (OMIM: 147050,600807,607796) PHD fing ( 292) 235 56.3 2e-07
NP_001035533 (OMIM: 147050,600807,607796) PHD fing ( 331) 235 56.3 2.2e-07
XP_006718902 (OMIM: 159555,605130) PREDICTED: hist (3133) 217 53.6 1.4e-05
XP_011541135 (OMIM: 159555,605130) PREDICTED: hist (3166) 217 53.6 1.4e-05
NP_005924 (OMIM: 159555,605130) histone-lysine N-m (3969) 217 53.6 1.7e-05
NP_001184033 (OMIM: 159555,605130) histone-lysine (3972) 217 53.6 1.7e-05
XP_011541133 (OMIM: 159555,605130) PREDICTED: hist (4002) 217 53.6 1.7e-05
XP_011541132 (OMIM: 159555,605130) PREDICTED: hist (4004) 217 53.6 1.7e-05
XP_011541131 (OMIM: 159555,605130) PREDICTED: hist (4005) 217 53.6 1.7e-05
XP_016883035 (OMIM: 606834) PREDICTED: histone-lys (1703) 201 50.2 7.7e-05
XP_011525863 (OMIM: 606834) PREDICTED: histone-lys (2527) 201 50.4 0.00011
XP_016883034 (OMIM: 606834) PREDICTED: histone-lys (2527) 201 50.4 0.00011
XP_011525864 (OMIM: 606834) PREDICTED: histone-lys (2628) 201 50.4 0.00011
XP_016883033 (OMIM: 606834) PREDICTED: histone-lys (2685) 201 50.4 0.00011
NP_055542 (OMIM: 606834) histone-lysine N-methyltr (2715) 201 50.4 0.00011
XP_016867979 (OMIM: 606833) PREDICTED: histone-lys (3741) 200 50.3 0.00016
XP_016867978 (OMIM: 606833) PREDICTED: histone-lys (3873) 200 50.3 0.00017
XP_011514756 (OMIM: 606833) PREDICTED: histone-lys (4678) 200 50.4 0.00019
XP_011514755 (OMIM: 606833) PREDICTED: histone-lys (4904) 200 50.4 0.0002
NP_733751 (OMIM: 606833) histone-lysine N-methyltr (4911) 200 50.4 0.0002
XP_016867977 (OMIM: 606833) PREDICTED: histone-lys (4922) 200 50.4 0.0002
XP_006716142 (OMIM: 606833) PREDICTED: histone-lys (4927) 200 50.4 0.0002
XP_005250088 (OMIM: 606833) PREDICTED: histone-lys (4928) 200 50.4 0.0002
XP_011514754 (OMIM: 606833) PREDICTED: histone-lys (4932) 200 50.4 0.0002
XP_016867976 (OMIM: 606833) PREDICTED: histone-lys (4934) 200 50.4 0.0002
XP_011514753 (OMIM: 606833) PREDICTED: histone-lys (4943) 200 50.4 0.0002
XP_016867975 (OMIM: 606833) PREDICTED: histone-lys (4954) 200 50.4 0.0002
XP_006716141 (OMIM: 606833) PREDICTED: histone-lys (4959) 200 50.4 0.0002
XP_011514758 (OMIM: 606833) PREDICTED: histone-lys (4963) 200 50.4 0.0002
XP_016867974 (OMIM: 606833) PREDICTED: histone-lys (4966) 200 50.4 0.0002
XP_011514752 (OMIM: 606833) PREDICTED: histone-lys (4967) 200 50.4 0.0002
XP_016867973 (OMIM: 606833) PREDICTED: histone-lys (4972) 200 50.4 0.0002
XP_016867971 (OMIM: 606833) PREDICTED: histone-lys (4978) 200 50.4 0.0002
XP_016867972 (OMIM: 606833) PREDICTED: histone-lys (4978) 200 50.4 0.0002
XP_005250085 (OMIM: 606833) PREDICTED: histone-lys (4979) 200 50.4 0.0002
XP_016867970 (OMIM: 606833) PREDICTED: histone-lys (4982) 200 50.4 0.0002
XP_005250084 (OMIM: 606833) PREDICTED: histone-lys (4982) 200 50.4 0.0002
XP_005250083 (OMIM: 606833) PREDICTED: histone-lys (4982) 200 50.4 0.0002
XP_006716140 (OMIM: 606833) PREDICTED: histone-lys (4982) 200 50.4 0.0002
XP_005250082 (OMIM: 606833) PREDICTED: histone-lys (4983) 200 50.4 0.0002
XP_016867969 (OMIM: 606833) PREDICTED: histone-lys (4983) 200 50.4 0.0002
XP_005261779 (OMIM: 603107) PREDICTED: transcripti (1960) 186 47.4 0.00066
XP_006724376 (OMIM: 603107) PREDICTED: transcripti (1960) 186 47.4 0.00066
>>NP_060239 (OMIM: 611299) G2/M phase-specific E3 ubiqui (706 aa)
initn: 4894 init1: 4894 opt: 4894 Z-score: 5159.7 bits: 965.2 E(85289): 0
Smith-Waterman score: 4894; 100.0% identity (100.0% similar) in 706 aa overlap (1-706:1-706)
10 20 30 40 50 60
pF1KA1 MNESKPGDSQNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MNESKPGDSQNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 VYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 ASFCWDHRPVQIITSNNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ASFCWDHRPVQIITSNNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 NAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAYQELLQHYERCDVRRCRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAYQELLQHYERCDVRRCRC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 KEGRDYNAPDSKWEIKRCQCCGSSGTHLACSSLRSWEQNWECLECRGIIYNSGEFQKAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KEGRDYNAPDSKWEIKRCQCCGSSGTHLACSSLRSWEQNWECLECRGIIYNSGEFQKAKK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 HVLPNSNNVGITDCLLEESSPKLPRQSPGSQSKDLLRQGSKFRRNVSTLLIELGFQIKKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 HVLPNSNNVGITDCLLEESSPKLPRQSPGSQSKDLLRQGSKFRRNVSTLLIELGFQIKKK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 TKRLYINKANIWNSALDAFRNRNFNPSYAIEVAYVIENDNFGSEHPGSKQEFLSLLMQHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TKRLYINKANIWNSALDAFRNRNFNPSYAIEVAYVIENDNFGSEHPGSKQEFLSLLMQHL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 ENSSLFEGSLSKNLSLNSQALKENLYYEAGKMLAISLVHGGPSPGFFSKTLFNCLVYGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ENSSLFEGSLSKNLSLNSQALKENLYYEAGKMLAISLVHGGPSPGFFSKTLFNCLVYGPE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 NTQPILDDVSDFDVAQIIIRINTATTVADLKSIINECYNYLELIGCLRLITTLSDKYMLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NTQPILDDVSDFDVAQIIIRINTATTVADLKSIINECYNYLELIGCLRLITTLSDKYMLV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 KDILGYHVIQRVHTPFESFKQGLKTLGVLEKIQAYPEAFCSILCHKPESLSAKILSELFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KDILGYHVIQRVHTPFESFKQGLKTLGVLEKIQAYPEAFCSILCHKPESLSAKILSELFT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 VHTLPDVKALGFWNSYLQAVEDGKSTTTMEDILIFATGCSSIPPAGFKPTPSIECLHVDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VHTLPDVKALGFWNSYLQAVEDGKSTTTMEDILIFATGCSSIPPAGFKPTPSIECLHVDF
610 620 630 640 650 660
670 680 690 700
pF1KA1 PVGNKCNNCLAIPITNTYKEFQENMDFTIRNTLRLEKEESSHYIGH
::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PVGNKCNNCLAIPITNTYKEFQENMDFTIRNTLRLEKEESSHYIGH
670 680 690 700
>>XP_011535227 (OMIM: 611299) PREDICTED: G2/M phase-spec (706 aa)
initn: 4894 init1: 4894 opt: 4894 Z-score: 5159.7 bits: 965.2 E(85289): 0
Smith-Waterman score: 4894; 100.0% identity (100.0% similar) in 706 aa overlap (1-706:1-706)
10 20 30 40 50 60
pF1KA1 MNESKPGDSQNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNESKPGDSQNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 VYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 ASFCWDHRPVQIITSNNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASFCWDHRPVQIITSNNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 NAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAYQELLQHYERCDVRRCRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAYQELLQHYERCDVRRCRC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 KEGRDYNAPDSKWEIKRCQCCGSSGTHLACSSLRSWEQNWECLECRGIIYNSGEFQKAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEGRDYNAPDSKWEIKRCQCCGSSGTHLACSSLRSWEQNWECLECRGIIYNSGEFQKAKK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 HVLPNSNNVGITDCLLEESSPKLPRQSPGSQSKDLLRQGSKFRRNVSTLLIELGFQIKKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HVLPNSNNVGITDCLLEESSPKLPRQSPGSQSKDLLRQGSKFRRNVSTLLIELGFQIKKK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 TKRLYINKANIWNSALDAFRNRNFNPSYAIEVAYVIENDNFGSEHPGSKQEFLSLLMQHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKRLYINKANIWNSALDAFRNRNFNPSYAIEVAYVIENDNFGSEHPGSKQEFLSLLMQHL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 ENSSLFEGSLSKNLSLNSQALKENLYYEAGKMLAISLVHGGPSPGFFSKTLFNCLVYGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENSSLFEGSLSKNLSLNSQALKENLYYEAGKMLAISLVHGGPSPGFFSKTLFNCLVYGPE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 NTQPILDDVSDFDVAQIIIRINTATTVADLKSIINECYNYLELIGCLRLITTLSDKYMLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NTQPILDDVSDFDVAQIIIRINTATTVADLKSIINECYNYLELIGCLRLITTLSDKYMLV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 KDILGYHVIQRVHTPFESFKQGLKTLGVLEKIQAYPEAFCSILCHKPESLSAKILSELFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDILGYHVIQRVHTPFESFKQGLKTLGVLEKIQAYPEAFCSILCHKPESLSAKILSELFT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 VHTLPDVKALGFWNSYLQAVEDGKSTTTMEDILIFATGCSSIPPAGFKPTPSIECLHVDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VHTLPDVKALGFWNSYLQAVEDGKSTTTMEDILIFATGCSSIPPAGFKPTPSIECLHVDF
610 620 630 640 650 660
670 680 690 700
pF1KA1 PVGNKCNNCLAIPITNTYKEFQENMDFTIRNTLRLEKEESSHYIGH
::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVGNKCNNCLAIPITNTYKEFQENMDFTIRNTLRLEKEESSHYIGH
670 680 690 700
>>NP_001295026 (OMIM: 611299) G2/M phase-specific E3 ubi (660 aa)
initn: 4551 init1: 4551 opt: 4551 Z-score: 4798.5 bits: 898.3 E(85289): 0
Smith-Waterman score: 4551; 100.0% identity (100.0% similar) in 660 aa overlap (47-706:1-660)
20 30 40 50 60 70
pF1KA1 CRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEGVYGFLIEDIRKEVNRA
::::::::::::::::::::::::::::::
NP_001 MSSGIWQRGKEEEGVYGFLIEDIRKEVNRA
10 20 30
80 90 100 110 120 130
pF1KA1 SKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNFASFCWDHRPVQIITSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNFASFCWDHRPVQIITSN
40 50 60 70 80 90
140 150 160 170 180 190
pF1KA1 NYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAINAGVFFFRCTICNNSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAINAGVFFFRCTICNNSD
100 110 120 130 140 150
200 210 220 230 240 250
pF1KA1 IFQKEMLRMGIHIPEKDASWELEENAYQELLQHYERCDVRRCRCKEGRDYNAPDSKWEIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFQKEMLRMGIHIPEKDASWELEENAYQELLQHYERCDVRRCRCKEGRDYNAPDSKWEIK
160 170 180 190 200 210
260 270 280 290 300 310
pF1KA1 RCQCCGSSGTHLACSSLRSWEQNWECLECRGIIYNSGEFQKAKKHVLPNSNNVGITDCLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RCQCCGSSGTHLACSSLRSWEQNWECLECRGIIYNSGEFQKAKKHVLPNSNNVGITDCLL
220 230 240 250 260 270
320 330 340 350 360 370
pF1KA1 EESSPKLPRQSPGSQSKDLLRQGSKFRRNVSTLLIELGFQIKKKTKRLYINKANIWNSAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EESSPKLPRQSPGSQSKDLLRQGSKFRRNVSTLLIELGFQIKKKTKRLYINKANIWNSAL
280 290 300 310 320 330
380 390 400 410 420 430
pF1KA1 DAFRNRNFNPSYAIEVAYVIENDNFGSEHPGSKQEFLSLLMQHLENSSLFEGSLSKNLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAFRNRNFNPSYAIEVAYVIENDNFGSEHPGSKQEFLSLLMQHLENSSLFEGSLSKNLSL
340 350 360 370 380 390
440 450 460 470 480 490
pF1KA1 NSQALKENLYYEAGKMLAISLVHGGPSPGFFSKTLFNCLVYGPENTQPILDDVSDFDVAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSQALKENLYYEAGKMLAISLVHGGPSPGFFSKTLFNCLVYGPENTQPILDDVSDFDVAQ
400 410 420 430 440 450
500 510 520 530 540 550
pF1KA1 IIIRINTATTVADLKSIINECYNYLELIGCLRLITTLSDKYMLVKDILGYHVIQRVHTPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIIRINTATTVADLKSIINECYNYLELIGCLRLITTLSDKYMLVKDILGYHVIQRVHTPF
460 470 480 490 500 510
560 570 580 590 600 610
pF1KA1 ESFKQGLKTLGVLEKIQAYPEAFCSILCHKPESLSAKILSELFTVHTLPDVKALGFWNSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESFKQGLKTLGVLEKIQAYPEAFCSILCHKPESLSAKILSELFTVHTLPDVKALGFWNSY
520 530 540 550 560 570
620 630 640 650 660 670
pF1KA1 LQAVEDGKSTTTMEDILIFATGCSSIPPAGFKPTPSIECLHVDFPVGNKCNNCLAIPITN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQAVEDGKSTTTMEDILIFATGCSSIPPAGFKPTPSIECLHVDFPVGNKCNNCLAIPITN
580 590 600 610 620 630
680 690 700
pF1KA1 TYKEFQENMDFTIRNTLRLEKEESSHYIGH
::::::::::::::::::::::::::::::
NP_001 TYKEFQENMDFTIRNTLRLEKEESSHYIGH
640 650 660
>>XP_011535228 (OMIM: 611299) PREDICTED: G2/M phase-spec (667 aa)
initn: 3061 init1: 3061 opt: 3065 Z-score: 3232.2 bits: 608.5 E(85289): 2.7e-173
Smith-Waterman score: 4513; 94.3% identity (94.5% similar) in 706 aa overlap (1-706:1-667)
10 20 30 40 50 60
pF1KA1 MNESKPGDSQNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNESKPGDSQNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 VYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 ASFCWDHRPVQIITSNNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASFCWDHRPVQIITSNNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 NAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAYQELLQHYERCDVRRCRC
:::::::::::::::::::::::::::::::
XP_011 NAGVFFFRCTICNNSDIFQKEMLRMGIHIPE-----------------------------
190 200 210
250 260 270 280 290 300
pF1KA1 KEGRDYNAPDSKWEIKRCQCCGSSGTHLACSSLRSWEQNWECLECRGIIYNSGEFQKAKK
.:::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ----------NKWEIKRCQCCGSSGTHLACSSLRSWEQNWECLECRGIIYNSGEFQKAKK
220 230 240 250 260
310 320 330 340 350 360
pF1KA1 HVLPNSNNVGITDCLLEESSPKLPRQSPGSQSKDLLRQGSKFRRNVSTLLIELGFQIKKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HVLPNSNNVGITDCLLEESSPKLPRQSPGSQSKDLLRQGSKFRRNVSTLLIELGFQIKKK
270 280 290 300 310 320
370 380 390 400 410 420
pF1KA1 TKRLYINKANIWNSALDAFRNRNFNPSYAIEVAYVIENDNFGSEHPGSKQEFLSLLMQHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKRLYINKANIWNSALDAFRNRNFNPSYAIEVAYVIENDNFGSEHPGSKQEFLSLLMQHL
330 340 350 360 370 380
430 440 450 460 470 480
pF1KA1 ENSSLFEGSLSKNLSLNSQALKENLYYEAGKMLAISLVHGGPSPGFFSKTLFNCLVYGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENSSLFEGSLSKNLSLNSQALKENLYYEAGKMLAISLVHGGPSPGFFSKTLFNCLVYGPE
390 400 410 420 430 440
490 500 510 520 530 540
pF1KA1 NTQPILDDVSDFDVAQIIIRINTATTVADLKSIINECYNYLELIGCLRLITTLSDKYMLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NTQPILDDVSDFDVAQIIIRINTATTVADLKSIINECYNYLELIGCLRLITTLSDKYMLV
450 460 470 480 490 500
550 560 570 580 590 600
pF1KA1 KDILGYHVIQRVHTPFESFKQGLKTLGVLEKIQAYPEAFCSILCHKPESLSAKILSELFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDILGYHVIQRVHTPFESFKQGLKTLGVLEKIQAYPEAFCSILCHKPESLSAKILSELFT
510 520 530 540 550 560
610 620 630 640 650 660
pF1KA1 VHTLPDVKALGFWNSYLQAVEDGKSTTTMEDILIFATGCSSIPPAGFKPTPSIECLHVDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VHTLPDVKALGFWNSYLQAVEDGKSTTTMEDILIFATGCSSIPPAGFKPTPSIECLHVDF
570 580 590 600 610 620
670 680 690 700
pF1KA1 PVGNKCNNCLAIPITNTYKEFQENMDFTIRNTLRLEKEESSHYIGH
::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVGNKCNNCLAIPITNTYKEFQENMDFTIRNTLRLEKEESSHYIGH
630 640 650 660
>>NP_001015877 (OMIM: 300414,301900) PHD finger protein (365 aa)
initn: 265 init1: 237 opt: 295 Z-score: 316.2 bits: 68.1 E(85289): 7.1e-11
Smith-Waterman score: 295; 31.4% identity (65.4% similar) in 156 aa overlap (3-153:6-153)
10 20 30 40 50
pF1KA1 MNESKPGDSQNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKE
:.: : ... : ::... : .. :. .:. ....:. :.:.::.. . ..
NP_001 MSSSVEQKKGPTRQRKCGFCKSNRD--KECGQLLISENQKVAAHHKCMLFSSALVSSHSD
10 20 30 40 50
60 70 80 90 100 110
pF1KA1 EEGVYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQ-----REC
.:.. :: :::..::..:..:: : .:. ::.::: . :.:.::. :.:. ::
NP_001 NESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KA1 IFQFTGNFASFCWDHRPVQIITSNNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHR
: : . .: :. :..: . .: .. . .::
NP_001 PSQ--GIYMVYCRKHKK----TAHNSEADLEESFNEHELEPSSPKSKKKSRKGRPRKTNF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KA1 DCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAYQELLQHYER
NP_001 KGLSEDTRSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFN
180 190 200 210 220 230
>--
initn: 194 init1: 130 opt: 251 Z-score: 269.8 bits: 59.5 E(85289): 2.7e-08
Smith-Waterman score: 251; 28.5% identity (62.3% similar) in 130 aa overlap (2-127:201-329)
10 20 30
pF1KA1 MNESKPGDSQNLACVFCRKHDDCPNKYGEKK
..:.:.:.. : ::. .. . :. .
NP_001 NFKGLSEDTRSTSSHGTDEMESSSYRDRSPHRSSPSDTRP-KCGFCHVGEEENEARGKLH
180 190 200 210 220
40 50 60 70 80 90
pF1KA1 TKEKWNLTVHYYCLLMSSGIWQRGKEEEGVYG-FLIEDIRKEVNRASKLKCCVCKKNGAS
. . ..:: :.:.::: : .. .: : :. . .:..:....:: .:.. ::.
NP_001 IFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGAT
230 240 250 260 270 280
100 110 120 130 140
pF1KA1 IGCVAPRCKRSYHFPCGLQRECIF---QFTGNFASFCWDHRPVQIITSNNYRESLPCTIC
::: : ..::. ::.: . . . : . .: .:
NP_001 IGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGK
290 300 310 320 330 340
150 160 170 180 190 200
pF1KA1 LEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGI
NP_001 VEIDQQQLTQQQLNGN
350 360
>>NP_115834 (OMIM: 300414,301900) PHD finger protein 6 i (365 aa)
initn: 265 init1: 237 opt: 295 Z-score: 316.2 bits: 68.1 E(85289): 7.1e-11
Smith-Waterman score: 295; 31.4% identity (65.4% similar) in 156 aa overlap (3-153:6-153)
10 20 30 40 50
pF1KA1 MNESKPGDSQNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKE
:.: : ... : ::... : .. :. .:. ....:. :.:.::.. . ..
NP_115 MSSSVEQKKGPTRQRKCGFCKSNRD--KECGQLLISENQKVAAHHKCMLFSSALVSSHSD
10 20 30 40 50
60 70 80 90 100 110
pF1KA1 EEGVYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQ-----REC
.:.. :: :::..::..:..:: : .:. ::.::: . :.:.::. :.:. ::
NP_115 NESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KA1 IFQFTGNFASFCWDHRPVQIITSNNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHR
: : . .: :. :..: . .: .. . .::
NP_115 PSQ--GIYMVYCRKHKK----TAHNSEADLEESFNEHELEPSSPKSKKKSRKGRPRKTNF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KA1 DCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAYQELLQHYER
NP_115 KGLSEDTRSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFN
180 190 200 210 220 230
>--
initn: 194 init1: 130 opt: 251 Z-score: 269.8 bits: 59.5 E(85289): 2.7e-08
Smith-Waterman score: 251; 28.5% identity (62.3% similar) in 130 aa overlap (2-127:201-329)
10 20 30
pF1KA1 MNESKPGDSQNLACVFCRKHDDCPNKYGEKK
..:.:.:.. : ::. .. . :. .
NP_115 NFKGLSEDTRSTSSHGTDEMESSSYRDRSPHRSSPSDTRP-KCGFCHVGEEENEARGKLH
180 190 200 210 220
40 50 60 70 80 90
pF1KA1 TKEKWNLTVHYYCLLMSSGIWQRGKEEEGVYG-FLIEDIRKEVNRASKLKCCVCKKNGAS
. . ..:: :.:.::: : .. .: : :. . .:..:....:: .:.. ::.
NP_115 IFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGAT
230 240 250 260 270 280
100 110 120 130 140
pF1KA1 IGCVAPRCKRSYHFPCGLQRECIF---QFTGNFASFCWDHRPVQIITSNNYRESLPCTIC
::: : ..::. ::.: . . . : . .: .:
NP_115 IGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGK
290 300 310 320 330 340
150 160 170 180 190 200
pF1KA1 LEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGI
NP_115 VEIDQQQLTQQQLNGN
350 360
>>NP_115711 (OMIM: 300414,301900) PHD finger protein 6 i (312 aa)
initn: 299 init1: 237 opt: 290 Z-score: 311.9 bits: 67.0 E(85289): 1.2e-10
Smith-Waterman score: 290; 33.6% identity (67.9% similar) in 131 aa overlap (3-128:6-132)
10 20 30 40 50
pF1KA1 MNESKPGDSQNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKE
:.: : ... : ::... : .. :. .:. ....:. :.:.::.. . ..
NP_115 MSSSVEQKKGPTRQRKCGFCKSNRD--KECGQLLISENQKVAAHHKCMLFSSALVSSHSD
10 20 30 40 50
60 70 80 90 100 110
pF1KA1 EEGVYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQ-----REC
.:.. :: :::..::..:..:: : .:. ::.::: . :.:.::. :.:. ::
NP_115 NESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KA1 IFQFTGNFASFCWDHRPVQIITSNNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHR
: : . .: :.
NP_115 PSQ--GIYMVYCRKHKKTAHNSEAADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGL
120 130 140 150 160 170
>>NP_001035534 (OMIM: 147050,600807,607796) PHD finger p (292 aa)
initn: 214 init1: 159 opt: 235 Z-score: 254.3 bits: 56.3 E(85289): 2e-07
Smith-Waterman score: 235; 24.7% identity (52.9% similar) in 223 aa overlap (23-233:9-229)
10 20 30 40 50
pF1KA1 MNESKPGDSQNLACVFCRKHDDCPN--KYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEE
::. .:. .. :...: :::.:::. . ..
NP_001 MEKRTCALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQD
10 20 30 40
60 70 80 90 100 110
pF1KA1 --EGVYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQ-
. .: .:...::..:. :::: :.: ::..:: :...::: :. . . . :
NP_001 PLNPDRSFDVESVKKEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQS
50 60 70 80 90 100
120 130 140 150 160 170
pF1KA1 --FTGNFASFCWDHRPVQIITSNNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHRD
: . .: .: ::... .. . .:. . .. : : :.
NP_001 DGVRGIYKLLCQQHAQFPIIAQSAKFSGVKRKRGRK--KPLSGNHVQPPETMKCNTFIRQ
110 120 130 140 150 160
180 190 200 210 220
pF1KA1 CLQVQA--INAGV---FFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAYQELLQ
. .. .: : :. .: . . . .:.: :::: . :. :.:. .
NP_001 VKEEHGRHTDATVKVPFLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETTSESDYEEIGS
170 180 190 200 210 220
230 240 250 260 270 280
pF1KA1 HYERCDVRRCRCKEGRDYNAPDSKWEIKRCQCCGSSGTHLACSSLRSWEQNWECLECRGI
:
NP_001 ALFDCRLFEDTFVNFQAAIEKKIHASQQRWQQLKEEIELLQDLKQTLCSFQENRDLMSSS
230 240 250 260 270 280
>>NP_001035533 (OMIM: 147050,600807,607796) PHD finger p (331 aa)
initn: 214 init1: 159 opt: 235 Z-score: 253.6 bits: 56.3 E(85289): 2.2e-07
Smith-Waterman score: 235; 24.7% identity (52.9% similar) in 223 aa overlap (23-233:48-268)
10 20 30 40 50
pF1KA1 MNESKPGDSQNLACVFCRKHDDCPN--KYGEKKTKEKWNLTVHYYCLLMSSG
::. .:. .. :...: :::.:::
NP_001 PEARPAQEALLLPTGVFQVAEKMEKRTCALCPKDVEYNVLYFAQSENIAAHENCLLYSSG
20 30 40 50 60 70
60 70 80 90 100
pF1KA1 IWQRGKEE--EGVYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGL
. . .. . .: .:...::..:. :::: :.: ::..:: :...::: :.
NP_001 LVECEDQDPLNPDRSFDVESVKKEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAK
80 90 100 110 120 130
110 120 130 140 150 160
pF1KA1 QRECIFQ---FTGNFASFCWDHRPVQIITSNNYRESLPCTICLEFIEPIPSYNILRSPCC
. . . : : . .: .: ::... .. . .:. . ..
NP_001 KDDAVPQSDGVRGIYKLLCQQHAQFPIIAQSAKFSGVKRKRGRK--KPLSGNHVQPPETM
140 150 160 170 180 190
170 180 190 200 210 220
pF1KA1 KNAWFHRDCLQVQA--INAGV---FFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEE
: : :. . .. .: : :. .: . . . .:.: :::: . :
NP_001 KCNTFIRQVKEEHGRHTDATVKVPFLKKCKEAGLLNYLLEEILDKVHSIPEKLMDETTSE
200 210 220 230 240 250
230 240 250 260 270 280
pF1KA1 NAYQELLQHYERCDVRRCRCKEGRDYNAPDSKWEIKRCQCCGSSGTHLACSSLRSWEQNW
. :.:. . :
NP_001 SDYEEIGSALFDCRLFEDTFVNFQAAIEKKIHASQQRWQQLKEEIELLQDLKQTLCSFQE
260 270 280 290 300 310
>>XP_006718902 (OMIM: 159555,605130) PREDICTED: histone- (3133 aa)
initn: 107 init1: 107 opt: 217 Z-score: 221.0 bits: 53.6 E(85289): 1.4e-05
Smith-Waterman score: 219; 25.9% identity (55.4% similar) in 139 aa overlap (6-138:1029-1155)
10 20 30
pF1KA1 MNESKPGDSQNLACVFCRKH-DDCPNKYGE--KKT
:: .: :..: . :: : :.
XP_006 PDSPTPLHPPTPPILSTDRSREDSPELNPPPGIEDNRQCALCLTYGDDSANDAGRLLYIG
1000 1010 1020 1030 1040 1050
40 50 60 70 80 90
pF1KA1 KEKWNLTVHYYCLLMSSGIWQRGKEEEGVYGFLIEDIRKEVNRASKLKCCVCKKNGASIG
...:. : : : :. ... ...: ..... : :...:.: :.: ::..:
XP_006 QNEWT---HVNCALWSAEVFE---DDDGS----LKNVHMAVIRGKQLRCEFCQKPGATVG
1060 1070 1080 1090 1100
100 110 120 130 140
pF1KA1 CVAPRCKRSYHFPCGLQRECIFQFTGNFASFCWDHRPV---QIITSNNYRESLPCTICLE
: : .::: :. ..:.: . .: :: . ... :..
XP_006 CCLTSCTSNYHFMCSRAKNCVF--LDDKKVYCQRHRDLIKGEVVPENGFEVFRRVFVDFE
1110 1120 1130 1140 1150 1160
150 160 170 180 190 200
pF1KA1 FIEPIPSYNILRSPCCKNAWFHRDCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGIHI
XP_006 GISLRRKFLNGLEPENIHMMIGSMTIDCLGILNDLSDCEDKLFPIGYQCSRVYWSTTDAR
1170 1180 1190 1200 1210 1220
706 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 21:00:16 2016 done: Wed Nov 2 21:00:18 2016
Total Scan time: 11.030 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]