FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1321, 695 aa
  1>>>pF1KA1321 695 - 695 aa - 695 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4518+/-0.00107; mu= 0.2265+/- 0.064
 mean_var=194.1777+/-39.511, 0's: 0 Z-trim(110.3): 40  B-trim: 69 in 1/50
 Lambda= 0.092040
 statistics sampled from 11457 (11490) to 11457 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.353), width:  16
 Scan time:  3.310

The best scores are:                                      opt bits E(32554)
CCDS32600.1 NUFIP2 gene_id:57532|Hs108|chr17       ( 695) 4631 627.9 1.5e-179


>>CCDS32600.1 NUFIP2 gene_id:57532|Hs108|chr17            (695 aa)
 initn: 4631 init1: 4631 opt: 4631  Z-score: 3336.9  bits: 627.9 E(32554): 1.5e-179
Smith-Waterman score: 4631; 100.0% identity (100.0% similar) in 695 aa overlap (1-695:1-695)

               10        20        30        40        50        60
pF1KA1 MEEKPGQPQPQHHHSHHHPHHHPQQQQQQPHHHHHYYFYNHSHNHHHHHHHQQPHQYLQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEEKPGQPQPQHHHSHHHPHHHPQQQQQQPHHHHHYYFYNHSHNHHHHHHHQQPHQYLQH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 GAEGSPKAQPKPLKHEQKHTLQQHQETPKKKTGYGELNGNAGEREISLKNLSSDEATNPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GAEGSPKAQPKPLKHEQKHTLQQHQETPKKKTGYGELNGNAGEREISLKNLSSDEATNPI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 SRVLNGNQQVVDTSLKQTVKANTFGKAGIKTKNFIQKNSMDKKNGKSYENKSGENQSVDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SRVLNGNQQVVDTSLKQTVKANTFGKAGIKTKNFIQKNSMDKKNGKSYENKSGENQSVDK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 SDTIPIPNGVVTNNSGYITNGYMGKGADNDGSGSESGYTTPKKRKARRNSAKGCENLNIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SDTIPIPNGVVTNNSGYITNGYMGKGADNDGSGSESGYTTPKKRKARRNSAKGCENLNIV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 QDKIMQQETSVPTLKQGLETFKPDYSEQKGNRVDGSKPIWKYETGPGGTSRGKPAVGDML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QDKIMQQETSVPTLKQGLETFKPDYSEQKGNRVDGSKPIWKYETGPGGTSRGKPAVGDML
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 RKSSDSKPGVSSKKFDDRPKGKHASAVASKEDSWTLFKPPPVFPVDNSSAKIVPKISYAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RKSSDSKPGVSSKKFDDRPKGKHASAVASKEDSWTLFKPPPVFPVDNSSAKIVPKISYAS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 KVKENLNKTIQNSSVSPTSSSSSSSSTGETQTQSSSRLSQVPMSALKSVTSANFSNGPVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KVKENLNKTIQNSSVSPTSSSSSSSSTGETQTQSSSRLSQVPMSALKSVTSANFSNGPVL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 AGTDGNVYPPGGQPLLTTAANTLTPISSGTDSVLQDMSLTSAAVEQIKTSLFIYPSNMQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AGTDGNVYPPGGQPLLTTAANTLTPISSGTDSVLQDMSLTSAAVEQIKTSLFIYPSNMQT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 MLLSTAQVDLPSQTDQQNLGDIFQNQWGLSFINEPSAGPETVTGKSSEHKVMEVTFQGEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MLLSTAQVDLPSQTDQQNLGDIFQNQWGLSFINEPSAGPETVTGKSSEHKVMEVTFQGEY
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 PATLVSQGAEIIPSGTEHPVFPKAYELEKRTSPQVLGSILKSGTTSESGALSLEPSHIGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PATLVSQGAEIIPSGTEHPVFPKAYELEKRTSPQVLGSILKSGTTSESGALSLEPSHIGD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 LQKADTSSQGALVFLSKDYEIESQNPLASPTNTLLGSAKEQRYQRGLERNDSWGSFDLRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LQKADTSSQGALVFLSKDYEIESQNPLASPTNTLLGSAKEQRYQRGLERNDSWGSFDLRA
              610       620       630       640       650       660

              670       680       690     
pF1KA1 AIVYHTKEMESIWNLQKQDPKRIITYNEAMDSPDQ
       :::::::::::::::::::::::::::::::::::
CCDS32 AIVYHTKEMESIWNLQKQDPKRIITYNEAMDSPDQ
              670       680       690     




695 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:57:45 2016 done: Wed Nov  2 20:57:46 2016
 Total Scan time:  3.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]