FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1310, 780 aa
  1>>>pF1KA1310 780 - 780 aa - 780 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7982+/-0.000903; mu= 4.6328+/- 0.054
 mean_var=176.9078+/-36.022, 0's: 0 Z-trim(112.5): 15  B-trim: 8 in 1/52
 Lambda= 0.096427
 statistics sampled from 13262 (13269) to 13262 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.408), width:  16
 Scan time:  4.410

The best scores are:                                      opt bits E(32554)
CCDS46361.1 KANSL3 gene_id:55683|Hs108|chr2        ( 878) 3851 548.3  2e-155


>>CCDS46361.1 KANSL3 gene_id:55683|Hs108|chr2             (878 aa)
 initn: 3864 init1: 3833 opt: 3851  Z-score: 2904.0  bits: 548.3 E(32554): 2e-155
Smith-Waterman score: 4880; 96.7% identity (96.7% similar) in 780 aa overlap (1-780:1-754)

               10        20        30        40        50        60
pF1KA1 MAHRGGERDFQTSARRMGTSLLFQLSVHERELDLVFLDHSYAKPWSAHPDASSARPTRML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAHRGGERDFQTSARRMGTSLLFQLSVHERELDLVFLDHSYAKPWSAHPDASSARPTRML
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 FVTPRRQHESTIESDVPIDVETVTSTPMPLYDNQKARSVMNECERHVIFARTDADAPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FVTPRRQHESTIESDVPIDVETVTSTPMPLYDNQKARSVMNECERHVIFARTDADAPPPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 EDWEEHVNRTGWTMAQNKLFNKILKALQSDRLARLANEGACNEPVLRRVAVDKCARRVRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EDWEEHVNRTGWTMAQNKLFNKILKALQSDRLARLANEGACNEPVLRRVAVDKCARRVRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 ALASVSWDTKLIQWLHTTLVETLSLPMLAAYLDALQTLKGKIPTLIDRMLVSSNTKTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ALASVSWDTKLIQWLHTTLVETLSLPMLAAYLDALQTLKGKIPTLIDRMLVSSNTKTGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 GAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIASSGPSSSVFPTSRRHRFWQSQLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIASSGPSSSVFPTSRRHRFWQSQLS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 CLGKVIPVATHLLNNGSGVGVLQCLEHMIGAVRSKVLEIHSHFPHKPIILIGWNTGALVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CLGKVIPVATHLLNNGSGVGVLQCLEHMIGAVRSKVLEIHSHFPHKPIILIGWNTGALVA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 CHVSVMEYVTAVVCLGFPLLTVDGPRGDVDDPLLDMKTPVLFVIGQNSLQCHPEAMEDFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CHVSVMEYVTAVVCLGFPLLTVDGPRGDVDDPLLDMKTPVLFVIGQNSLQCHPEAMEDFR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 EKIRAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDFLTGVLTRAEGHMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EKIRAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDFLTGVLTRAEGHMG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 SEPRDQDAEKKKKPRDVARRDLAFEVPERGSRPASPAAKLPASPSGSEDLSSVSSSPTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SEPRDQDAEKKKKPRDVARRDLAFEVPERGSRPASPAAKLPASPSGSEDLSSVSSSPTSS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 PKTKVTTVTSAQKSSQIGSSQLLKRHVQRTEAVLTHKQAQAQFAAFLKQNMLVRKALPPG
       ::::::::::::::::::::::::::::::::::::::::                    
CCDS46 PKTKVTTVTSAQKSSQIGSSQLLKRHVQRTEAVLTHKQAQ--------------------
              550       560       570       580                    

              610       620       630       640       650       660
pF1KA1 TSSCLFVPISSEPPEEGEKEDLRVQLKRHHPSSPLPGSKTSKRPKIKVSLISQGDTAGGP
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ------VPISSEPPEEGEKEDLRVQLKRHHPSSPLPGSKTSKRPKIKVSLISQGDTAGGP
                    590       600       610       620       630    

              670       680       690       700       710       720
pF1KA1 CAPSQGSAPEAAGGKPITMTLGQASAGAKELTGLLTTAKSSSSEGGVSASPVPSVVSSST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CAPSQGSAPEAAGGKPITMTLGQASAGAKELTGLLTTAKSSSSEGGVSASPVPSVVSSST
          640       650       660       670       680       690    

              730       740       750       760       770       780
pF1KA1 APSALHTLQSRLVATSPGSSLPGATSASSLLQGLSFSLQDISSKTSGLPANPSPGPAPQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 APSALHTLQSRLVATSPGSSLPGATSASSLLQGLSFSLQDISSKTSGLPANPSPGPAPQA
          700       710       720       730       740       750    

CCDS46 TSVKLPTPMQSLGAITTGTSTIVRTIPVATTLSSLGATPGGKPTAIHQLLTNGGLAKLAS
          760       770       780       790       800       810    




780 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:57:07 2016 done: Wed Nov  2 20:57:08 2016
 Total Scan time:  4.410 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]