FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1291, 1204 aa
  1>>>pF1KA1291 1204 - 1204 aa - 1204 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1955+/-0.00104; mu= 17.1409+/- 0.063
 mean_var=64.9454+/-13.157, 0's: 0 Z-trim(101.9): 31  B-trim: 0 in 0/51
 Lambda= 0.159148
 statistics sampled from 6711 (6720) to 6711 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.565), E-opt: 0.2 (0.206), width:  16
 Scan time:  4.410

The best scores are:                                      opt bits E(32554)
CCDS47430.1 XPO5 gene_id:57510|Hs108|chr6          (1204) 7989 1843.8       0


>>CCDS47430.1 XPO5 gene_id:57510|Hs108|chr6               (1204 aa)
 initn: 7989 init1: 7989 opt: 7989  Z-score: 9899.8  bits: 1843.8 E(32554):    0
Smith-Waterman score: 7989; 99.9% identity (100.0% similar) in 1204 aa overlap (1-1204:1-1204)

               10        20        30        40        50        60
pF1KA1 MAMDQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAMDQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 AIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 VEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 TLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 SHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYIL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 SAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 THPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 THPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 YSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 SCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 FDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 RRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 NYERQKVFLEELMAPVASIWLSQDMHRVLSDVDAFIVYVGTDQKSCDPGLEDPCGLNRAR
       ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
CCDS47 NYERQKVFLEELMAPVASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRAR
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 MSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKLLDNLLALI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKLLDNLLALI
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 RTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQPLLELNDSPVFKTVLERMQRFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQPLLELNDSPVFKTVLERMQRFF
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 STLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLRVFVKPLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 STLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLRVFVKPLV
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 LFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQ
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA1 LVRMLTREVMDLITVCCVSKKGADHSSAPPADGDDEEMMATEVTPSAMAELTDLGKCLMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LVRMLTREVMDLITVCCVSKKGADHSSAPPADGDDEEMMATEVTPSAMAELTDLGKCLMK
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA1 HEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSGTLLADAVTWLFTSVLKGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 HEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSGTLLADAVTWLFTSVLKGL
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA1 QMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQFDCKLLNPSLQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQFDCKLLNPSLQK
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA1 VADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFKKTKPMLETEVLDNDGGGLAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFKKTKPMLETEVLDNDGGGLAT
             1150      1160      1170      1180      1190      1200

           
pF1KA1 IFEP
       ::::
CCDS47 IFEP
           




1204 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 10:53:04 2016 done: Thu Nov  3 10:53:05 2016
 Total Scan time:  4.410 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]