FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1271, 540 aa
  1>>>pF1KA1271 540 - 540 aa - 540 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.0027+/-0.00097; mu= -16.7659+/- 0.058
 mean_var=388.5565+/-78.860, 0's: 0 Z-trim(115.8): 17  B-trim: 0 in 0/54
 Lambda= 0.065065
 statistics sampled from 16314 (16327) to 16314 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.502), width:  16
 Scan time:  4.370

The best scores are:                                      opt bits E(32554)
CCDS33437.1 MAVS gene_id:57506|Hs108|chr20         ( 540) 3637 355.3 1.1e-97
CCDS56176.1 MAVS gene_id:57506|Hs108|chr20         ( 399) 2628 260.5 2.7e-69


>>CCDS33437.1 MAVS gene_id:57506|Hs108|chr20              (540 aa)
 initn: 3637 init1: 3637 opt: 3637  Z-score: 1867.5  bits: 355.3 E(32554): 1.1e-97
Smith-Waterman score: 3637; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540)

               10        20        30        40        50        60
pF1KA1 MPFAEDKTYKYICRNFSNFCNVDVVEILPYLPCLTARDQDRLRATCTLSGNRDTLWHLFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MPFAEDKTYKYICRNFSNFCNVDVVEILPYLPCLTARDQDRLRATCTLSGNRDTLWHLFN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 TLQRRPGWVEYFIAALRGCELVDLADEVASVYQSYQPRTSDRPPDPLEPPSLPAERPGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TLQRRPGWVEYFIAALRGCELVDLADEVASVYQSYQPRTSDRPPDPLEPPSLPAERPGPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 TPAAAHSIPYNSCREKEPSYPMPVQETQAPESPGENSEQALQTLSPRAIPRNPDGGPLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TPAAAHSIPYNSCREKEPSYPMPVQETQAPESPGENSEQALQTLSPRAIPRNPDGGPLES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 SSDLAALSPLTSSGHQEQDTELGSTHTAGATSSLTPSRGPVSPSVSFQPLARSTPRASRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SSDLAALSPLTSSGHQEQDTELGSTHTAGATSSLTPSRGPVSPSVSFQPLARSTPRASRL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 PGPTGSVVSTGTSFSSSSPGLASAGAAEGKQGAESDQAEPIICSSGAEAPANSLPSKVPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PGPTGSVVSTGTSFSSSSPGLASAGAAEGKQGAESDQAEPIICSSGAEAPANSLPSKVPT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 TLMPVNTVALKVPANPASVSTVPSKLPTSSKPPGAVPSNALTNPAPSKLPINSTRAGMVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TLMPVNTVALKVPANPASVSTVPSKLPTSSKPPGAVPSNALTNPAPSKLPINSTRAGMVP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 SKVPTSMVLTKVSASTVPTDGSSRNEETPAAPTPAGATGGSSAWLDSSSENRGLGSELSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SKVPTSMVLTKVSASTVPTDGSSRNEETPAAPTPAGATGGSSAWLDSSSENRGLGSELSK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 PGVLASQVDSPFSGCFEDLAISASTSLGMGPCHGPEENEYKSEGTFGIHVAENPSIQLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PGVLASQVDSPFSGCFEDLAISASTSLGMGPCHGPEENEYKSEGTFGIHVAENPSIQLLE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 GNPGPPADPDGGPRPQADRKFQEREVPCHRPSPGALWLQVAVTGVLVVTLLVVLYRRRLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GNPGPPADPDGGPRPQADRKFQEREVPCHRPSPGALWLQVAVTGVLVVTLLVVLYRRRLH
              490       500       510       520       530       540

>>CCDS56176.1 MAVS gene_id:57506|Hs108|chr20              (399 aa)
 initn: 2628 init1: 2628 opt: 2628  Z-score: 1357.6  bits: 260.5 E(32554): 2.7e-69
Smith-Waterman score: 2628; 100.0% identity (100.0% similar) in 399 aa overlap (142-540:1-399)

             120       130       140       150       160       170 
pF1KA1 LPAERPGPPTPAAAHSIPYNSCREKEPSYPMPVQETQAPESPGENSEQALQTLSPRAIPR
                                     ::::::::::::::::::::::::::::::
CCDS56                               MPVQETQAPESPGENSEQALQTLSPRAIPR
                                             10        20        30

             180       190       200       210       220       230 
pF1KA1 NPDGGPLESSSDLAALSPLTSSGHQEQDTELGSTHTAGATSSLTPSRGPVSPSVSFQPLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 NPDGGPLESSSDLAALSPLTSSGHQEQDTELGSTHTAGATSSLTPSRGPVSPSVSFQPLA
               40        50        60        70        80        90

             240       250       260       270       280       290 
pF1KA1 RSTPRASRLPGPTGSVVSTGTSFSSSSPGLASAGAAEGKQGAESDQAEPIICSSGAEAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RSTPRASRLPGPTGSVVSTGTSFSSSSPGLASAGAAEGKQGAESDQAEPIICSSGAEAPA
              100       110       120       130       140       150

             300       310       320       330       340       350 
pF1KA1 NSLPSKVPTTLMPVNTVALKVPANPASVSTVPSKLPTSSKPPGAVPSNALTNPAPSKLPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 NSLPSKVPTTLMPVNTVALKVPANPASVSTVPSKLPTSSKPPGAVPSNALTNPAPSKLPI
              160       170       180       190       200       210

             360       370       380       390       400       410 
pF1KA1 NSTRAGMVPSKVPTSMVLTKVSASTVPTDGSSRNEETPAAPTPAGATGGSSAWLDSSSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 NSTRAGMVPSKVPTSMVLTKVSASTVPTDGSSRNEETPAAPTPAGATGGSSAWLDSSSEN
              220       230       240       250       260       270

             420       430       440       450       460       470 
pF1KA1 RGLGSELSKPGVLASQVDSPFSGCFEDLAISASTSLGMGPCHGPEENEYKSEGTFGIHVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RGLGSELSKPGVLASQVDSPFSGCFEDLAISASTSLGMGPCHGPEENEYKSEGTFGIHVA
              280       290       300       310       320       330

             480       490       500       510       520       530 
pF1KA1 ENPSIQLLEGNPGPPADPDGGPRPQADRKFQEREVPCHRPSPGALWLQVAVTGVLVVTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ENPSIQLLEGNPGPPADPDGGPRPQADRKFQEREVPCHRPSPGALWLQVAVTGVLVVTLL
              340       350       360       370       380       390

             540
pF1KA1 VVLYRRRLH
       :::::::::
CCDS56 VVLYRRRLH
                




540 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:27:23 2016 done: Fri Nov  4 01:27:24 2016
 Total Scan time:  4.370 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]