Result of FASTA (ccds) for
pF1KA1254
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1254, 757 aa
1>>>pF1KA1254 757 - 757 aa - 757 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.8082+/-0.00129; mu= -0.1710+/- 0.076
mean_var=276.5356+/-57.077, 0's: 0 Z-trim(109.3): 43 B-trim: 104 in 2/51
Lambda= 0.077126
statistics sampled from 10783 (10808) to 10783 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.332), width: 16
Scan time: 2.690
The best scores are: opt bits E(32554)
CCDS42039.1 CCPG1 gene_id:9236|Hs108|chr15 ( 757) 4961 566.3 6.1e-161
CCDS55966.1 CCPG1 gene_id:9236|Hs108|chr15 ( 807) 4869 556.1 7.7e-158
CCDS55967.1 CCPG1 gene_id:9236|Hs108|chr15 ( 424) 1996 236.2 8.1e-62
>>CCDS42039.1 CCPG1 gene_id:9236|Hs108|chr15 (757 aa)
initn: 4961 init1: 4961 opt: 4961 Z-score: 3002.9 bits: 566.3 E(32554): 6.1e-161
Smith-Waterman score: 4961; 99.9% identity (100.0% similar) in 757 aa overlap (1-757:1-757)
10 20 30 40 50 60
pF1KA1 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 RKKTVSASESEDRLVGEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RKKTVSASESEDRLVAEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 EKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 KKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 SKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 KNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 KEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQII
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 QRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDG
670 680 690 700 710 720
730 740 750
pF1KA1 VFEKLDEYIYRHFFGHTFSPPYGPRSVYIKPCHYSSL
:::::::::::::::::::::::::::::::::::::
CCDS42 VFEKLDEYIYRHFFGHTFSPPYGPRSVYIKPCHYSSL
730 740 750
>>CCDS55966.1 CCPG1 gene_id:9236|Hs108|chr15 (807 aa)
initn: 4869 init1: 4869 opt: 4869 Z-score: 2947.2 bits: 556.1 E(32554): 7.7e-158
Smith-Waterman score: 4869; 99.9% identity (100.0% similar) in 744 aa overlap (1-744:1-744)
10 20 30 40 50 60
pF1KA1 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 RKKTVSASESEDRLVGEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RKKTVSASESEDRLVAEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 EKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 KKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 SKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 KNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHF
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 KEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQII
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 QRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDG
670 680 690 700 710 720
730 740 750
pF1KA1 VFEKLDEYIYRHFFGHTFSPPYGPRSVYIKPCHYSSL
::::::::::::::::::::::::
CCDS55 VFEKLDEYIYRHFFGHTFSPPYGPSRPDKKQRMVNIENSRHRKQEQKHLQPQPYKREGKW
730 740 750 760 770 780
>>CCDS55967.1 CCPG1 gene_id:9236|Hs108|chr15 (424 aa)
initn: 1996 init1: 1996 opt: 1996 Z-score: 1223.3 bits: 236.2 E(32554): 8.1e-62
Smith-Waterman score: 1996; 99.7% identity (100.0% similar) in 311 aa overlap (1-311:1-311)
10 20 30 40 50 60
pF1KA1 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 RKKTVSASESEDRLVGEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RKKTVSASESEDRLVAEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
:::::::::::
CCDS55 TNLATENQYLRKLFTDFVNDVKDYLRNMKEYEVDNDGVFEKLDEYIYRHFFGHTFSPPYG
310 320 330 340 350 360
757 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 20:51:19 2016 done: Wed Nov 2 20:51:19 2016
Total Scan time: 2.690 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]