Result of FASTA (ccds) for
pF1KA1237
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1237, 1482 aa
1>>>pF1KA1237 1482 - 1482 aa - 1482 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.2369+/-0.00124; mu= -7.3034+/- 0.075
mean_var=369.4396+/-74.720, 0's: 0 Z-trim(113.3): 87 B-trim: 40 in 1/49
Lambda= 0.066727
statistics sampled from 13843 (13921) to 13843 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.428), width: 16
Scan time: 4.910
The best scores are: opt bits E(32554)
CCDS46898.1 HEG1 gene_id:57493|Hs108|chr3 (1381) 5587 553.1 2.2e-156
>>CCDS46898.1 HEG1 gene_id:57493|Hs108|chr3 (1381 aa)
initn: 8862 init1: 5561 opt: 5587 Z-score: 2921.1 bits: 553.1 E(32554): 2.2e-156
Smith-Waterman score: 8759; 93.0% identity (93.1% similar) in 1482 aa overlap (1-1482:1-1381)
10 20 30 40 50 60
pF1KA1 MASPRASRWPPPLLLLLLPLLLLMPPAAPGTRDPPPSPARRALSLAPLAGAGLELQLERR
::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
CCDS46 MASPRASRWPPPLLLLLLPLLLL-PPAAPGTRDPPPSPARRALSLAPLAGAGLELQLERR
10 20 30 40 50
70 80 90 100 110 120
pF1KA1 PEREPPPTPPRERRGPATPGPSYRAPEPGAATQRGPSGRAPRGGSADAAWKHWPESNTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PEREPPPTPPRERRGPATPGPSYRAPEPGAATQRGPSGRAPRGGSADAAWKHWPESNTEA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KA1 HVENITFYQNQEDFSTVSSKEGVMVQTSGKSHAASDAPENLTLLAETADARGRSGSSSRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HVENITFYQNQEDFSTVSSKEGVMVQTSGKSHAASDAPENLTLLAETADARGRSGSSSRT
120 130 140 150 160 170
190 200 210 220 230 240
pF1KA1 NFTILPVGYSLEIATALTSQSGNLASESLHLPSSSSEFDERIAAFQTKSGTASEMGTERA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NFTILPVGYSLEIATALTSQSGNLASESLHLPSSSSEFDERIAAFQTKSGTASEMGTERA
180 190 200 210 220 230
250 260 270 280 290 300
pF1KA1 MGLSEEWIVHSQEATTSAWSPSFLPALEMGELTTPSRKRNSSGPDLSWLHFYRTAASSPL
::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MGLSEEWTVHSQEATTSAWSPSFLPALEMGELTTPSRKRNSSGPDLSWLHFYRTAASSPL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KA1 LDLSSSSESTEKLNNSTGLQSSSVSQTKTMHVATVFTDGGPRTLRSLTVSLGPVSKTEGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LDLSSSSESTEKLNNSTGLQSSSVSQTKTMHVATVFTDGGPRTLRSLTVSLGPVSKTEGF
300 310 320 330 340 350
370 380 390 400 410 420
pF1KA1 PKDSRIATTSSSVLLSPSAVESRRNSRVTGNPGDEEFIEPSTENEFGLTSLRWQNDSPTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PKDSRIATTSSSVLLSPSAVESRRNSRVTGNPGDEEFIEPSTENEFGLTSLRWQNDSPTF
360 370 380 390 400 410
430 440 450 460 470 480
pF1KA1 GEHQLASSSEVQNGSPMSQTETVSRSVAPMRGGEITAHWLLTNSTTSADVTGSSASYPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GEHQLASSSEVQNGSPMSQTETVSRSVAPMRGGEITAHWLLTNSTTSADVTGSSASYPEG
420 430 440 450 460 470
490 500 510 520 530 540
pF1KA1 VNASVLTQFSDSTVQSGGSHTALGDRSYSESSSTSSSESLNSSAPRGERSTLEDSREPGQ
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VNASVLTQFSDSTVQSGGSHTALGDRSYSESSSTSSSESLNSSAPRGERS----------
480 490 500 510 520
550 560 570 580 590 600
pF1KA1 ALGDSSANAEDRTSGVPSLGTHTLATVTGNGERTLRSVTLTNTSMSTTSGEAGSPAAAMH
CCDS46 ------------------------------------------------------------
610 620 630 640 650 660
pF1KA1 QETEGASLHVNVTDDMGLVSRSLAASSALGVAGISYGQVRGTAIEQRTSSDHTDHTYLSS
.:::::::::::::::::::::::::::::
CCDS46 ------------------------------IAGISYGQVRGTAIEQRTSSDHTDHTYLSS
530 540 550
670 680 690 700 710 720
pF1KA1 TFTKGERALLSITDNSSSSDIVESSTSYIKISNSSHSEYSSFFHAQTERSNISSYDGEYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TFTKGERALLSITDNSSSSDIVESSTSYIKISNSSHSEYSSFFHAQTERSNISSYDGEYA
560 570 580 590 600 610
730 740 750 760 770 780
pF1KA1 QPSTESPVLHTSNLPSYTPTINMPNTSVVLDTDAEFVSDSSSSSSSSSSSSSSGPPLPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QPSTESPVLHTSNLPSYTPTINMPNTSVVLDTDAEFVSDSSSSSSSSSSSSSSGPPLPLP
620 630 640 650 660 670
790 800 810 820 830 840
pF1KA1 SVSQSHHLFSSILPSTRASVHLLKSTSDASTPWSSSPSPLPVSLTTSTSAPLSVSQTTLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SVSQSHHLFSSILPSTRASVHLLKSTSDASTPWSSSPSPLPVSLTTSTSAPLSVSQTTLP
680 690 700 710 720 730
850 860 870 880 890 900
pF1KA1 QSSSTPVLPRARETPVTSFQTSTMTSFMTMLHSSQTADLKSQSTPHQEKVITESKSPSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QSSSTPVLPRARETPVTSFQTSTMTSFMTMLHSSQTADLKSQSTPHQEKVITESKSPSLV
740 750 760 770 780 790
910 920 930 940 950 960
pF1KA1 SLPTESTKAVTTNSPLPPSLTESSTEQTLPATSTNLAQMSPTFTTTILKTSQPLMTTPGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SLPTESTKAVTTNSPLPPSLTESSTEQTLPATSTNLAQMSPTFTTTILKTSQPLMTTPGT
800 810 820 830 840 850
970 980 990 1000 1010 1020
pF1KA1 LSSTASLVTGPIAVQTTAGKQLSLTHPEILVPQISTEGGISTERNRVIVDATTGLIPLTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LSSTASLVTGPIAVQTTAGKQLSLTHPEILVPQISTEGGISTERNRVIVDATTGLIPLTS
860 870 880 890 900 910
1030 1040 1050 1060 1070 1080
pF1KA1 VPTSAKEMTTKLGVTAEYSPASRSLGTSPSPQTTVVSTAEDLAPKSATFAVQSSTQSPTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VPTSAKEMTTKLGVTAEYSPASRSLGTSPSPQTTVVSTAEDLAPKSATFAVQSSTQSPTT
920 930 940 950 960 970
1090 1100 1110 1120 1130 1140
pF1KA1 VSSSASVNSCAVNPCLHNGECVADNTSRGYHCRCPPSWQGDDCSVDVNECLSNPCPSTAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VSSSASVNSCAVNPCLHNGECVADNTSRGYHCRCPPSWQGDDCSVDVNECLSNPCPSTAM
980 990 1000 1010 1020 1030
1150 1160 1170 1180 1190 1200
pF1KA1 CNNTQGSFICKCPVGYQLEKGICNLVRTFVTEFKLKRTFLNTTVEKHSDLQEVENEITKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CNNTQGSFICKCPVGYQLEKGICNLVRTFVTEFKLKRTFLNTTVEKHSDLQEVENEITKT
1040 1050 1060 1070 1080 1090
1210 1220 1230 1240 1250 1260
pF1KA1 LNMCFSALPSYIRSTVHASRESNAVVISLQTTFSLASNVTLFDLADRMQKCVNSCKSSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LNMCFSALPSYIRSTVHASRESNAVVISLQTTFSLASNVTLFDLADRMQKCVNSCKSSAE
1100 1110 1120 1130 1140 1150
1270 1280 1290 1300 1310 1320
pF1KA1 VCQLLGSQRRIFRAGSLCKRKSPECDKDTSICTDLDGVALCQCKSGYFQFNKMDHSCRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VCQLLGSQRRIFRAGSLCKRKSPECDKDTSICTDLDGVALCQCKSGYFQFNKMDHSCRAC
1160 1170 1180 1190 1200 1210
1330 1340 1350 1360 1370 1380
pF1KA1 EDGYRLENETCMSCPFGLGGLNCGNPYQLITVVIAAAGGGLLLILGIALIVTCCRKNKND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EDGYRLENETCMSCPFGLGGLNCGNPYQLITVVIAAAGGGLLLILGIALIVTCCRKNKND
1220 1230 1240 1250 1260 1270
1390 1400 1410 1420 1430 1440
pF1KA1 ISKLIFKSGDFQMSPYAEYPKNPRSQEWGREAIEMHENGSTKNLLQMTDVYYSPTSVRNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ISKLIFKSGDFQMSPYAEYPKNPRSQEWGREAIEMHENGSTKNLLQMTDVYYSPTSVRNP
1280 1290 1300 1310 1320 1330
1450 1460 1470 1480
pF1KA1 ELERNGLYPAYTGLPGSRHSCIFPGQYNPSFISDESRRRDYF
::::::::::::::::::::::::::::::::::::::::::
CCDS46 ELERNGLYPAYTGLPGSRHSCIFPGQYNPSFISDESRRRDYF
1340 1350 1360 1370 1380
1482 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 20:49:24 2016 done: Wed Nov 2 20:49:25 2016
Total Scan time: 4.910 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]