FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1189, 284 aa
  1>>>pF1KA1189 284 - 284 aa - 284 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0602+/-0.000864; mu= 8.6038+/- 0.052
 mean_var=147.4160+/-28.888, 0's: 0 Z-trim(111.2): 14  B-trim: 0 in 0/54
 Lambda= 0.105634
 statistics sampled from 12161 (12173) to 12161 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.374), width:  16
 Scan time:  2.240

The best scores are:                                      opt bits E(32554)
CCDS46431.1 ERMN gene_id:57471|Hs108|chr2          ( 284) 1886 298.6 3.4e-81
CCDS42764.1 ERMN gene_id:57471|Hs108|chr2          ( 297) 1886 298.6 3.6e-81
CCDS77475.1 ERMN gene_id:57471|Hs108|chr2          ( 264) 1263 203.6 1.2e-52


>>CCDS46431.1 ERMN gene_id:57471|Hs108|chr2               (284 aa)
 initn: 1886 init1: 1886 opt: 1886  Z-score: 1571.1  bits: 298.6 E(32554): 3.4e-81
Smith-Waterman score: 1886; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284)

               10        20        30        40        50        60
pF1KA1 MTDVPATFTQAECNGDKPPENGQQTITKISEELTDVDSPLPHYRVEPSLEGALTKGSQEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MTDVPATFTQAECNGDKPPENGQQTITKISEELTDVDSPLPHYRVEPSLEGALTKGSQEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 RRKLQGNMLLNSSMEDKMLKENPEEKLFIVHKAITDLSLQETSADEMTFREGHQWEKIPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RRKLQGNMLLNSSMEDKMLKENPEEKLFIVHKAITDLSLQETSADEMTFREGHQWEKIPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 SGSNQEIRRQKERITEQPLKEEEDEDRKNKGHQAAEIEWLGFRKPSQADMLHSKHDEEQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SGSNQEIRRQKERITEQPLKEEEDEDRKNKGHQAAEIEWLGFRKPSQADMLHSKHDEEQK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 VWDEEIDDDDDDNCNNDEDEVRVIEFKKKHEEVSQFKEEGDASEDSPLSSASSQAVTPDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VWDEEIDDDDDDNCNNDEDEVRVIEFKKKHEEVSQFKEEGDASEDSPLSSASSQAVTPDE
              190       200       210       220       230       240

              250       260       270       280    
pF1KA1 QPTLGKKSDISRNAYSRYNTISYRKIRKGNTKQRIDEFESMMHL
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QPTLGKKSDISRNAYSRYNTISYRKIRKGNTKQRIDEFESMMHL
              250       260       270       280    

>>CCDS42764.1 ERMN gene_id:57471|Hs108|chr2               (297 aa)
 initn: 1886 init1: 1886 opt: 1886  Z-score: 1570.8  bits: 298.6 E(32554): 3.6e-81
Smith-Waterman score: 1886; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:14-297)

                            10        20        30        40       
pF1KA1              MTDVPATFTQAECNGDKPPENGQQTITKISEELTDVDSPLPHYRVEP
                    :::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MKTLSPDRIQPHIMTDVPATFTQAECNGDKPPENGQQTITKISEELTDVDSPLPHYRVEP
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KA1 SLEGALTKGSQEERRKLQGNMLLNSSMEDKMLKENPEEKLFIVHKAITDLSLQETSADEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SLEGALTKGSQEERRKLQGNMLLNSSMEDKMLKENPEEKLFIVHKAITDLSLQETSADEM
               70        80        90       100       110       120

       110       120       130       140       150       160       
pF1KA1 TFREGHQWEKIPLSGSNQEIRRQKERITEQPLKEEEDEDRKNKGHQAAEIEWLGFRKPSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TFREGHQWEKIPLSGSNQEIRRQKERITEQPLKEEEDEDRKNKGHQAAEIEWLGFRKPSQ
              130       140       150       160       170       180

       170       180       190       200       210       220       
pF1KA1 ADMLHSKHDEEQKVWDEEIDDDDDDNCNNDEDEVRVIEFKKKHEEVSQFKEEGDASEDSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ADMLHSKHDEEQKVWDEEIDDDDDDNCNNDEDEVRVIEFKKKHEEVSQFKEEGDASEDSP
              190       200       210       220       230       240

       230       240       250       260       270       280    
pF1KA1 LSSASSQAVTPDEQPTLGKKSDISRNAYSRYNTISYRKIRKGNTKQRIDEFESMMHL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LSSASSQAVTPDEQPTLGKKSDISRNAYSRYNTISYRKIRKGNTKQRIDEFESMMHL
              250       260       270       280       290       

>>CCDS77475.1 ERMN gene_id:57471|Hs108|chr2               (264 aa)
 initn: 1242 init1: 1242 opt: 1263  Z-score: 1058.4  bits: 203.6 E(32554): 1.2e-52
Smith-Waterman score: 1711; 93.0% identity (93.0% similar) in 284 aa overlap (1-284:1-264)

               10        20        30        40        50        60
pF1KA1 MTDVPATFTQAECNGDKPPENGQQTITKISEELTDVDSPLPHYRVEPSLEGALTKGSQEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MTDVPATFTQAECNGDKPPENGQQTITKISEELTDVDSPLPHYRVEPSLEGALTKGSQEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 RRKLQGNMLLNSSMEDKMLKENPEEKLFIVHKAITDLSLQETSADEMTFREGHQWEKIPL
       :::::::::::::::::::::                    :::::::::::::::::::
CCDS77 RRKLQGNMLLNSSMEDKMLKE--------------------TSADEMTFREGHQWEKIPL
               70        80                            90       100

              130       140       150       160       170       180
pF1KA1 SGSNQEIRRQKERITEQPLKEEEDEDRKNKGHQAAEIEWLGFRKPSQADMLHSKHDEEQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SGSNQEIRRQKERITEQPLKEEEDEDRKNKGHQAAEIEWLGFRKPSQADMLHSKHDEEQK
              110       120       130       140       150       160

              190       200       210       220       230       240
pF1KA1 VWDEEIDDDDDDNCNNDEDEVRVIEFKKKHEEVSQFKEEGDASEDSPLSSASSQAVTPDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VWDEEIDDDDDDNCNNDEDEVRVIEFKKKHEEVSQFKEEGDASEDSPLSSASSQAVTPDE
              170       180       190       200       210       220

              250       260       270       280    
pF1KA1 QPTLGKKSDISRNAYSRYNTISYRKIRKGNTKQRIDEFESMMHL
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QPTLGKKSDISRNAYSRYNTISYRKIRKGNTKQRIDEFESMMHL
              230       240       250       260    




284 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:43:18 2016 done: Wed Nov  2 20:43:18 2016
 Total Scan time:  2.240 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]