FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1153, 400 aa
  1>>>pF1KA1153 400 - 400 aa - 400 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6633+/-0.000825; mu= 11.9858+/- 0.050
 mean_var=114.3549+/-22.386, 0's: 0 Z-trim(111.3): 8  B-trim: 9 in 1/50
 Lambda= 0.119935
 statistics sampled from 12261 (12265) to 12261 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.377), width:  16
 Scan time:  2.290

The best scores are:                                      opt bits E(32554)
CCDS13093.1 TRMT6 gene_id:51605|Hs108|chr20        ( 497) 2446 433.8 1.6e-121
CCDS63225.1 TRMT6 gene_id:51605|Hs108|chr20        ( 327) 1335 241.5 8.6e-64


>>CCDS13093.1 TRMT6 gene_id:51605|Hs108|chr20             (497 aa)
 initn: 2445 init1: 2445 opt: 2446  Z-score: 2295.0  bits: 433.8 E(32554): 1.6e-121
Smith-Waterman score: 2446; 98.2% identity (98.7% similar) in 382 aa overlap (1-381:1-382)

               10        20        30        40        50        60
pF1KA1 MEGSGEQPGPQPQHPGDHRIRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNVIGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MEGSGEQPGPQPQHPGDHRIRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNVIGH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 SYGTAFEVTSGGSLQPKKKREEPTAETKEAGTDNRNIVDDGKSQKLTQDDIKALKDKGIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SYGTAFEVTSGGSLQPKKKREEPTAETKEAGTDNRNIVDDGKSQKLTQDDIKALKDKGIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 GEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIITVVKPSTRILSIMYYAREPGKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIITVVKPSTRILSIMYYAREPGKI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 NHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGFGSIIQLYPGGGPVRAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGFGSIIQLYPGGGPVRAA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 TACFGFPKSFLSGLYEFPLNKVDSLLHGTFSAKMLSSEPKDSALVEESNGTLEEKQASEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TACFGFPKSFLSGLYEFPLNKVDSLLHGTFSAKMLSSEPKDSALVEESNGTLEEKQASEQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 ENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEA
              310       320       330       340       350       360

              370        380       390       400                   
pF1KA1 AALLSERNADGC-VDGRRQETPQCMWALLQTDWHSLSPCLL                   
       :::::::::::  : .: . ::                                      
CCDS13 AALLSERNADGLIVASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPLLECYTKLRERGGV
              370       380       390       400       410       420

>>CCDS63225.1 TRMT6 gene_id:51605|Hs108|chr20             (327 aa)
 initn: 1334 init1: 1334 opt: 1335  Z-score: 1258.7  bits: 241.5 E(32554): 8.6e-64
Smith-Waterman score: 1335; 96.7% identity (97.6% similar) in 212 aa overlap (171-381:1-212)

              150       160       170       180       190       200
pF1KA1 FAQDKYIKKKKKKYEAIITVVKPSTRILSIMYYAREPGKINHMRYDTLAQMLTLGNIRAG
                                     ::::::::::::::::::::::::::::::
CCDS63                               MYYAREPGKINHMRYDTLAQMLTLGNIRAG
                                             10        20        30

              210       220       230       240       250       260
pF1KA1 NKMIVMETCAGLVLGAMMERMGGFGSIIQLYPGGGPVRAATACFGFPKSFLSGLYEFPLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NKMIVMETCAGLVLGAMMERMGGFGSIIQLYPGGGPVRAATACFGFPKSFLSGLYEFPLN
               40        50        60        70        80        90

              270       280       290       300       310       320
pF1KA1 KVDSLLHGTFSAKMLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KVDSLLHGTFSAKMLSSEPKDSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQET
              100       110       120       130       140       150

              330       340       350       360       370          
pF1KA1 METISQDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEAAALLSERNADGC-VDGRRQE
       :::::::::::::::::::::::::::::::::::::::::::::::::::  : .: . 
CCDS63 METISQDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEAAALLSERNADGLIVASRFHP
              160       170       180       190       200       210

     380       390       400                                       
pF1KA1 TPQCMWALLQTDWHSLSPCLL                                       
       ::                                                          
CCDS63 TPLLLSLLDFVAPSRPFVVYCQYKEPLLECYTKLRERGGVINLRLSETWLRNYQVLPDRS
              220       230       240       250       260       270




400 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:38:35 2016 done: Wed Nov  2 20:38:35 2016
 Total Scan time:  2.290 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]