FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1147, 455 aa
  1>>>pF1KA1147 455 - 455 aa - 455 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2936+/-0.000747; mu= 15.5327+/- 0.045
 mean_var=123.1251+/-24.666, 0's: 0 Z-trim(113.2): 5  B-trim: 0 in 0/52
 Lambda= 0.115585
 statistics sampled from 13845 (13847) to 13845 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.425), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS47726.1 KIAA1147 gene_id:57189|Hs108|chr7      ( 455) 3150 536.0  3e-152


>>CCDS47726.1 KIAA1147 gene_id:57189|Hs108|chr7           (455 aa)
 initn: 3150 init1: 3150 opt: 3150  Z-score: 2846.8  bits: 536.0 E(32554): 3e-152
Smith-Waterman score: 3150; 100.0% identity (100.0% similar) in 455 aa overlap (1-455:1-455)

               10        20        30        40        50        60
pF1KA1 MVEQGDAAPLLRWAEGPAVSLPQAPQPQAGGWGRGGGGGARPAAEPPRRREPEEPAAPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MVEQGDAAPLLRWAEGPAVSLPQAPQPQAGGWGRGGGGGARPAAEPPRRREPEEPAAPEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 LLQPGRLELGDVEEDQVVAVFVVTFDPRSGNMVEWCLPQDIDLEGVEFKSMASGSHKIQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LLQPGRLELGDVEEDQVVAVFVVTFDPRSGNMVEWCLPQDIDLEGVEFKSMASGSHKIQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 DFIYFRKGPFFGLACFANMPVESELERGARMKSVGILSPSYTLLYRYMHFLENQVRHQLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DFIYFRKGPFFGLACFANMPVESELERGARMKSVGILSPSYTLLYRYMHFLENQVRHQLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 MPGHYSHLAAFYEDKKGVLHAGPGRGSSLPPVYWLPSIHRYMYPEMKITHPAGCMSQFIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MPGHYSHLAAFYEDKKGVLHAGPGRGSSLPPVYWLPSIHRYMYPEMKITHPAGCMSQFIK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 FFGEQILILWKFALLRKRILIFSPPPVGVVCYRVYCCCCLANVSLPGIGGTIPESKPFFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FFGEQILILWKFALLRKRILIFSPPPVGVVCYRVYCCCCLANVSLPGIGGTIPESKPFFY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 VNVADIESLEVEVSYVACTTEKIFEEKRELYDVYVDNQNVKTHHDHLQPLLKINSADREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VNVADIESLEVEVSYVACTTEKIFEEKRELYDVYVDNQNVKTHHDHLQPLLKINSADREK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 YRRLNEQRQMLLYSQEVEEDYNPCEEDLFVLFFLEQNNRIFQTLLEVSASQDKTLTAEHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YRRLNEQRQMLLYSQEVEEDYNPCEEDLFVLFFLEQNNRIFQTLLEVSASQDKTLTAEHA
              370       380       390       400       410       420

              430       440       450     
pF1KA1 RGMGLDPQGDRSFLLDLLEAYGIDVMLVIDNPCCP
       :::::::::::::::::::::::::::::::::::
CCDS47 RGMGLDPQGDRSFLLDLLEAYGIDVMLVIDNPCCP
              430       440       450     




455 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:37:59 2016 done: Wed Nov  2 20:37:59 2016
 Total Scan time:  2.830 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]