Result of FASTA (omim) for
pF1KA1122
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1122, 1028 aa
1>>>pF1KA1122 1028 - 1028 aa - 1028 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1058+/-0.000477; mu= 14.6273+/- 0.030
mean_var=139.0291+/-27.632, 0's: 0 Z-trim(113.3): 252 B-trim: 195 in 1/55
Lambda= 0.108773
statistics sampled from 22384 (22641) to 22384 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.265), width: 16
Scan time: 12.060
The best scores are: opt bits E(85289)
NP_001121901 (OMIM: 136000,612761) SWI/SNF-related (1028) 6713 1066.2 0
NP_001121902 (OMIM: 136000,612761) SWI/SNF-related (1028) 6713 1066.2 0
XP_016863952 (OMIM: 136000,612761) PREDICTED: SWI/ (1026) 6689 1062.4 0
NP_064544 (OMIM: 136000,612761) SWI/SNF-related ma (1026) 6689 1062.4 0
NP_001241878 (OMIM: 136000,612761) SWI/SNF-related ( 596) 3907 625.7 2.4e-178
XP_016863954 (OMIM: 136000,612761) PREDICTED: SWI/ ( 505) 3307 531.5 4.6e-150
XP_016863953 (OMIM: 136000,612761) PREDICTED: SWI/ ( 505) 3307 531.5 4.6e-150
XP_016872368 (OMIM: 605191) PREDICTED: TATA-bindin (1519) 874 150.0 9.3e-35
XP_016872370 (OMIM: 605191) PREDICTED: TATA-bindin (1519) 874 150.0 9.3e-35
XP_016872369 (OMIM: 605191) PREDICTED: TATA-bindin (1519) 874 150.0 9.3e-35
XP_016872367 (OMIM: 605191) PREDICTED: TATA-bindin (1646) 874 150.0 9.9e-35
XP_011538630 (OMIM: 605191) PREDICTED: TATA-bindin (1693) 874 150.0 1e-34
XP_011538629 (OMIM: 605191) PREDICTED: TATA-bindin (1725) 874 150.1 1e-34
XP_016872366 (OMIM: 605191) PREDICTED: TATA-bindin (1800) 874 150.1 1.1e-34
XP_011538628 (OMIM: 605191) PREDICTED: TATA-bindin (1812) 874 150.1 1.1e-34
NP_003963 (OMIM: 605191) TATA-binding protein-asso (1849) 874 150.1 1.1e-34
XP_011519987 (OMIM: 610169) PREDICTED: DNA helicas (1209) 772 133.9 5.1e-30
NP_060139 (OMIM: 300687) DNA excision repair prote (1250) 730 127.3 5.1e-28
NP_001276002 (OMIM: 603946,616911) lymphoid-specif ( 700) 675 118.5 1.3e-25
NP_001276000 (OMIM: 603946,616911) lymphoid-specif ( 714) 674 118.4 1.5e-25
NP_001275997 (OMIM: 603946,616911) lymphoid-specif ( 822) 674 118.4 1.6e-25
NP_060533 (OMIM: 603946,616911) lymphoid-specific ( 838) 674 118.4 1.6e-25
NP_001010895 (OMIM: 615667,615715) DNA excision re ( 712) 600 106.8 4.5e-22
XP_011516949 (OMIM: 615667,615715) PREDICTED: DNA (1178) 600 106.9 6.7e-22
XP_011516948 (OMIM: 615667,615715) PREDICTED: DNA (1184) 600 106.9 6.7e-22
XP_011516947 (OMIM: 615667,615715) PREDICTED: DNA (1253) 600 106.9 7e-22
NP_064592 (OMIM: 615667,615715) DNA excision repai (1561) 600 107.0 8.3e-22
XP_011516943 (OMIM: 615667,615715) PREDICTED: DNA (1510) 596 106.4 1.3e-21
NP_001275996 (OMIM: 603946,616911) lymphoid-specif ( 884) 567 101.7 1.9e-20
XP_011519988 (OMIM: 610169) PREDICTED: DNA helicas ( 906) 521 94.4 2.9e-18
NP_060023 (OMIM: 610169) DNA helicase INO80 [Homo (1556) 521 94.6 4.5e-18
NP_006653 (OMIM: 136140,611421) helicase SRCAP [Ho (3230) 526 95.6 4.6e-18
NP_001276004 (OMIM: 603946,616911) lymphoid-specif ( 432) 505 91.7 9.5e-18
NP_001276003 (OMIM: 603946,616911) lymphoid-specif ( 477) 505 91.7 1e-17
NP_001276001 (OMIM: 603946,616911) lymphoid-specif ( 708) 505 91.9 1.4e-17
NP_001275999 (OMIM: 603946,616911) lymphoid-specif ( 740) 505 91.9 1.4e-17
NP_001275998 (OMIM: 603946,616911) lymphoid-specif ( 806) 505 91.9 1.5e-17
XP_011516946 (OMIM: 615667,615715) PREDICTED: DNA (1263) 508 92.5 1.6e-17
NP_003592 (OMIM: 603375) SWI/SNF-related matrix-as (1052) 461 85.1 2.3e-15
XP_016885240 (OMIM: 300012) PREDICTED: probable gl (1036) 453 83.8 5.3e-15
XP_016885239 (OMIM: 300012) PREDICTED: probable gl (1042) 453 83.8 5.3e-15
XP_006724845 (OMIM: 300012) PREDICTED: probable gl (1042) 453 83.8 5.3e-15
NP_001269804 (OMIM: 300012) probable global transc (1058) 453 83.8 5.4e-15
NP_065971 (OMIM: 610528,615032) chromodomain-helic (2302) 453 84.1 9.9e-15
NP_001164100 (OMIM: 610528,615032) chromodomain-he (2581) 453 84.1 1.1e-14
XP_016874223 (OMIM: 603277,617159) PREDICTED: chro (1892) 445 82.8 2e-14
XP_016874222 (OMIM: 603277,617159) PREDICTED: chro (1893) 445 82.8 2e-14
XP_016874221 (OMIM: 603277,617159) PREDICTED: chro (1895) 445 82.8 2e-14
XP_016874220 (OMIM: 603277,617159) PREDICTED: chro (1899) 445 82.8 2e-14
XP_016874219 (OMIM: 603277,617159) PREDICTED: chro (1900) 445 82.8 2e-14
>>NP_001121901 (OMIM: 136000,612761) SWI/SNF-related mat (1028 aa)
initn: 6713 init1: 6713 opt: 6713 Z-score: 5699.4 bits: 1066.2 E(85289): 0
Smith-Waterman score: 6713; 100.0% identity (100.0% similar) in 1028 aa overlap (1-1028:1-1028)
10 20 30 40 50 60
pF1KA1 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT
970 980 990 1000 1010 1020
pF1KA1 LLKTSMGL
::::::::
NP_001 LLKTSMGL
>>NP_001121902 (OMIM: 136000,612761) SWI/SNF-related mat (1028 aa)
initn: 6713 init1: 6713 opt: 6713 Z-score: 5699.4 bits: 1066.2 E(85289): 0
Smith-Waterman score: 6713; 100.0% identity (100.0% similar) in 1028 aa overlap (1-1028:1-1028)
10 20 30 40 50 60
pF1KA1 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT
970 980 990 1000 1010 1020
pF1KA1 LLKTSMGL
::::::::
NP_001 LLKTSMGL
>>XP_016863952 (OMIM: 136000,612761) PREDICTED: SWI/SNF- (1026 aa)
initn: 6689 init1: 4987 opt: 6689 Z-score: 5679.1 bits: 1062.4 E(85289): 0
Smith-Waterman score: 6689; 99.8% identity (99.8% similar) in 1028 aa overlap (1-1028:1-1026)
10 20 30 40 50 60
pF1KA1 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL
::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
XP_016 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--EKNTEMCNVMMQL
730 740 750 760 770
790 800 810 820 830 840
pF1KA1 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR
780 790 800 810 820 830
850 860 870 880 890 900
pF1KA1 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL
840 850 860 870 880 890
910 920 930 940 950 960
pF1KA1 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ
900 910 920 930 940 950
970 980 990 1000 1010 1020
pF1KA1 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT
960 970 980 990 1000 1010
pF1KA1 LLKTSMGL
::::::::
XP_016 LLKTSMGL
1020
>>NP_064544 (OMIM: 136000,612761) SWI/SNF-related matrix (1026 aa)
initn: 6689 init1: 4987 opt: 6689 Z-score: 5679.1 bits: 1062.4 E(85289): 0
Smith-Waterman score: 6689; 99.8% identity (99.8% similar) in 1028 aa overlap (1-1028:1-1026)
10 20 30 40 50 60
pF1KA1 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL
::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
NP_064 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--EKNTEMCNVMMQL
730 740 750 760 770
790 800 810 820 830 840
pF1KA1 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR
780 790 800 810 820 830
850 860 870 880 890 900
pF1KA1 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL
840 850 860 870 880 890
910 920 930 940 950 960
pF1KA1 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ
900 910 920 930 940 950
970 980 990 1000 1010 1020
pF1KA1 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT
960 970 980 990 1000 1010
pF1KA1 LLKTSMGL
::::::::
NP_064 LLKTSMGL
1020
>>NP_001241878 (OMIM: 136000,612761) SWI/SNF-related mat (596 aa)
initn: 3907 init1: 2205 opt: 3907 Z-score: 3323.0 bits: 625.7 E(85289): 2.4e-178
Smith-Waterman score: 3907; 99.7% identity (99.7% similar) in 598 aa overlap (431-1028:1-596)
410 420 430 440 450 460
pF1KA1 LTLIPQCSQKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMN
::::::::::::::::::::::::::::::
NP_001 MSKTNGLSEDLIWHCKTLIQERDVVIRLMN
10 20 30
470 480 490 500 510 520
pF1KA1 KCEDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KCEDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGIL
40 50 60 70 80 90
530 540 550 560 570 580
pF1KA1 ADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQ
100 110 120 130 140 150
590 600 610 620 630 640
pF1KA1 EERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIR
160 170 180 190 200 210
650 660 670 680 690 700
pF1KA1 YQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQ
220 230 240 250 260 270
710 720 730 740 750 760
pF1KA1 SIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKK
280 290 300 310 320 330
770 780 790 800 810 820
pF1KA1 SINNLVTEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLI
::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SINNL--EKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLI
340 350 360 370 380
830 840 850 860 870 880
pF1KA1 FEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQ
390 400 410 420 430 440
890 900 910 920 930 940
pF1KA1 FTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINL
450 460 470 480 490 500
950 960 970 980 990 1000
pF1KA1 TSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLE
510 520 530 540 550 560
1010 1020
pF1KA1 QDMTTVDEGDEGSMPADIATLLKTSMGL
::::::::::::::::::::::::::::
NP_001 QDMTTVDEGDEGSMPADIATLLKTSMGL
570 580 590
>>XP_016863954 (OMIM: 136000,612761) PREDICTED: SWI/SNF- (505 aa)
initn: 3307 init1: 3307 opt: 3307 Z-score: 2815.1 bits: 531.5 E(85289): 4.6e-150
Smith-Waterman score: 3307; 100.0% identity (100.0% similar) in 505 aa overlap (524-1028:1-505)
500 510 520 530 540 550
pF1KA1 SLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVP
::::::::::::::::::::::::::::::
XP_016 MGLGKTIQAIAFLAYLYQEGNNGPHLIVVP
10 20 30
560 570 580 590 600 610
pF1KA1 ASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDD
40 50 60 70 80 90
620 630 640 650 660 670
pF1KA1 RSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNF
100 110 120 130 140 150
680 690 700 710 720 730
pF1KA1 VMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPP
160 170 180 190 200 210
740 750 760 770 780 790
pF1KA1 KKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQY
220 230 240 250 260 270
800 810 820 830 840 850
pF1KA1 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL
280 290 300 310 320 330
860 870 880 890 900 910
pF1KA1 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH
340 350 360 370 380 390
920 930 940 950 960 970
pF1KA1 LIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKE
400 410 420 430 440 450
980 990 1000 1010 1020
pF1KA1 VLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATLLKTSMGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATLLKTSMGL
460 470 480 490 500
>>XP_016863953 (OMIM: 136000,612761) PREDICTED: SWI/SNF- (505 aa)
initn: 3307 init1: 3307 opt: 3307 Z-score: 2815.1 bits: 531.5 E(85289): 4.6e-150
Smith-Waterman score: 3307; 100.0% identity (100.0% similar) in 505 aa overlap (524-1028:1-505)
500 510 520 530 540 550
pF1KA1 SLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVP
::::::::::::::::::::::::::::::
XP_016 MGLGKTIQAIAFLAYLYQEGNNGPHLIVVP
10 20 30
560 570 580 590 600 610
pF1KA1 ASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDD
40 50 60 70 80 90
620 630 640 650 660 670
pF1KA1 RSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNF
100 110 120 130 140 150
680 690 700 710 720 730
pF1KA1 VMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPP
160 170 180 190 200 210
740 750 760 770 780 790
pF1KA1 KKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQY
220 230 240 250 260 270
800 810 820 830 840 850
pF1KA1 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL
280 290 300 310 320 330
860 870 880 890 900 910
pF1KA1 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH
340 350 360 370 380 390
920 930 940 950 960 970
pF1KA1 LIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKE
400 410 420 430 440 450
980 990 1000 1010 1020
pF1KA1 VLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATLLKTSMGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATLLKTSMGL
460 470 480 490 500
>>XP_016872368 (OMIM: 605191) PREDICTED: TATA-binding pr (1519 aa)
initn: 839 init1: 305 opt: 874 Z-score: 745.0 bits: 150.0 E(85289): 9.3e-35
Smith-Waterman score: 874; 33.9% identity (61.8% similar) in 558 aa overlap (484-1017:925-1462)
460 470 480 490 500 510
pF1KA1 VVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHK
: . : .: : . ::. :.::::...:
XP_016 DPPNMSAELIQLKAKERHFLEQLLDGKKLENYKIPVPINAEL--RKYQQDGVNWLAFLNK
900 910 920 930 940 950
520 530 540 550 560
pF1KA1 HGLNGILADEMGLGKTIQAIAFLA----YLYQEGNNG--------PHLIVVPASTIDNWL
. :.::: :.::::::.:.: .:: . :: . : :.: : . .:.
XP_016 YKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWV
960 970 980 990 1000 1010
570 580 590 600 610
pF1KA1 REVNLWCPT--LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRR
::. .: :. : : : :: ... .. . .:.::..:. . .: ..::
XP_016 DEVGKFCSREYLNPLHYTGPPTERIRLQHQV----KRHNLIVASYDVV---RNDIDFFRN
1020 1030 1040 1050 1060
620 630 640 650 660 670
pF1KA1 LKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF
.:.:: :.::::..:: . . . ..:: :..:.:::.:::.::: ::..:.:: ..
XP_016 IKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFL
1070 1080 1090 1100 1110 1120
680 690 700 710 720 730
pF1KA1 SSSTSEIRRMFSSKTKSADEQSIYEKERI------AHAKQIIKPFILRRVKEEVLKQLPP
.. . :. . : : .: .... : .:.. ::.:::.::.::..:::
XP_016 GTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVL-PFLLRRMKEDVLQDLPP
1130 1140 1150 1160 1170 1180
740 750 760 770 780 790
pF1KA1 KKDRIELCAMSEKQEQLYLGLF-NRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQ
: . :..: : ::: . .: : .... :. . . .: : ..: . :
XP_016 KIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKL-KATGHVFQALQ
1190 1200 1210 1220 1230 1240
800 810 820 830 840 850
pF1KA1 YYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLI
: .:: . :.: : : : . : . :... :: . . . :: .:
XP_016 YL--RKLCNHPALVLT-PQHPEFKTTA--EKLAVQNS-SLHDIQHAPKLSALKQLLLDCG
1250 1260 1270 1280 1290
860 870 880 890 900
pF1KA1 LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEV-LLKHHQHR--YLRLDGKTQIS
: .:. : .: :...: :. ::::.: ::: : ::::::. .
XP_016 LGNGSTSESG---TESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPG
1300 1310 1320 1330 1340 1350
910 920 930 940 950 960
pF1KA1 ERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVG
.: ....::.: .: :.::.:..::::.:::.:..:.. . : ::. : :: :: ::.:
XP_016 QRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG
1360 1370 1380 1390 1400 1410
970 980 990 1000 1010 1020
pF1KA1 QTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATLLKTSMGL
: . : : .::..::.::... ... :... . . . .... :: .:
XP_016 QKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDG
1420 1430 1440 1450 1460 1470
XP_016 KAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSLK
1480 1490 1500 1510
>>XP_016872370 (OMIM: 605191) PREDICTED: TATA-binding pr (1519 aa)
initn: 839 init1: 305 opt: 874 Z-score: 745.0 bits: 150.0 E(85289): 9.3e-35
Smith-Waterman score: 874; 33.9% identity (61.8% similar) in 558 aa overlap (484-1017:925-1462)
460 470 480 490 500 510
pF1KA1 VVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHK
: . : .: : . ::. :.::::...:
XP_016 DPPNMSAELIQLKAKERHFLEQLLDGKKLENYKIPVPINAEL--RKYQQDGVNWLAFLNK
900 910 920 930 940 950
520 530 540 550 560
pF1KA1 HGLNGILADEMGLGKTIQAIAFLA----YLYQEGNNG--------PHLIVVPASTIDNWL
. :.::: :.::::::.:.: .:: . :: . : :.: : . .:.
XP_016 YKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWV
960 970 980 990 1000 1010
570 580 590 600 610
pF1KA1 REVNLWCPT--LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRR
::. .: :. : : : :: ... .. . .:.::..:. . .: ..::
XP_016 DEVGKFCSREYLNPLHYTGPPTERIRLQHQV----KRHNLIVASYDVV---RNDIDFFRN
1020 1030 1040 1050 1060
620 630 640 650 660 670
pF1KA1 LKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF
.:.:: :.::::..:: . . . ..:: :..:.:::.:::.::: ::..:.:: ..
XP_016 IKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFL
1070 1080 1090 1100 1110 1120
680 690 700 710 720 730
pF1KA1 SSSTSEIRRMFSSKTKSADEQSIYEKERI------AHAKQIIKPFILRRVKEEVLKQLPP
.. . :. . : : .: .... : .:.. ::.:::.::.::..:::
XP_016 GTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVL-PFLLRRMKEDVLQDLPP
1130 1140 1150 1160 1170 1180
740 750 760 770 780 790
pF1KA1 KKDRIELCAMSEKQEQLYLGLF-NRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQ
: . :..: : ::: . .: : .... :. . . .: : ..: . :
XP_016 KIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKL-KATGHVFQALQ
1190 1200 1210 1220 1230 1240
800 810 820 830 840 850
pF1KA1 YYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLI
: .:: . :.: : : : . : . :... :: . . . :: .:
XP_016 YL--RKLCNHPALVLT-PQHPEFKTTA--EKLAVQNS-SLHDIQHAPKLSALKQLLLDCG
1250 1260 1270 1280 1290
860 870 880 890 900
pF1KA1 LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEV-LLKHHQHR--YLRLDGKTQIS
: .:. : .: :...: :. ::::.: ::: : ::::::. .
XP_016 LGNGSTSESG---TESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPG
1300 1310 1320 1330 1340 1350
910 920 930 940 950 960
pF1KA1 ERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVG
.: ....::.: .: :.::.:..::::.:::.:..:.. . : ::. : :: :: ::.:
XP_016 QRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG
1360 1370 1380 1390 1400 1410
970 980 990 1000 1010 1020
pF1KA1 QTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATLLKTSMGL
: . : : .::..::.::... ... :... . . . .... :: .:
XP_016 QKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDG
1420 1430 1440 1450 1460 1470
XP_016 KAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSLK
1480 1490 1500 1510
>>XP_016872369 (OMIM: 605191) PREDICTED: TATA-binding pr (1519 aa)
initn: 839 init1: 305 opt: 874 Z-score: 745.0 bits: 150.0 E(85289): 9.3e-35
Smith-Waterman score: 874; 33.9% identity (61.8% similar) in 558 aa overlap (484-1017:925-1462)
460 470 480 490 500 510
pF1KA1 VVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHK
: . : .: : . ::. :.::::...:
XP_016 DPPNMSAELIQLKAKERHFLEQLLDGKKLENYKIPVPINAEL--RKYQQDGVNWLAFLNK
900 910 920 930 940 950
520 530 540 550 560
pF1KA1 HGLNGILADEMGLGKTIQAIAFLA----YLYQEGNNG--------PHLIVVPASTIDNWL
. :.::: :.::::::.:.: .:: . :: . : :.: : . .:.
XP_016 YKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWV
960 970 980 990 1000 1010
570 580 590 600 610
pF1KA1 REVNLWCPT--LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRR
::. .: :. : : : :: ... .. . .:.::..:. . .: ..::
XP_016 DEVGKFCSREYLNPLHYTGPPTERIRLQHQV----KRHNLIVASYDVV---RNDIDFFRN
1020 1030 1040 1050 1060
620 630 640 650 660 670
pF1KA1 LKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF
.:.:: :.::::..:: . . . ..:: :..:.:::.:::.::: ::..:.:: ..
XP_016 IKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFL
1070 1080 1090 1100 1110 1120
680 690 700 710 720 730
pF1KA1 SSSTSEIRRMFSSKTKSADEQSIYEKERI------AHAKQIIKPFILRRVKEEVLKQLPP
.. . :. . : : .: .... : .:.. ::.:::.::.::..:::
XP_016 GTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVL-PFLLRRMKEDVLQDLPP
1130 1140 1150 1160 1170 1180
740 750 760 770 780 790
pF1KA1 KKDRIELCAMSEKQEQLYLGLF-NRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQ
: . :..: : ::: . .: : .... :. . . .: : ..: . :
XP_016 KIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKL-KATGHVFQALQ
1190 1200 1210 1220 1230 1240
800 810 820 830 840 850
pF1KA1 YYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLI
: .:: . :.: : : : . : . :... :: . . . :: .:
XP_016 YL--RKLCNHPALVLT-PQHPEFKTTA--EKLAVQNS-SLHDIQHAPKLSALKQLLLDCG
1250 1260 1270 1280 1290
860 870 880 890 900
pF1KA1 LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEV-LLKHHQHR--YLRLDGKTQIS
: .:. : .: :...: :. ::::.: ::: : ::::::. .
XP_016 LGNGSTSESG---TESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPG
1300 1310 1320 1330 1340 1350
910 920 930 940 950 960
pF1KA1 ERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVG
.: ....::.: .: :.::.:..::::.:::.:..:.. . : ::. : :: :: ::.:
XP_016 QRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG
1360 1370 1380 1390 1400 1410
970 980 990 1000 1010 1020
pF1KA1 QTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATLLKTSMGL
: . : : .::..::.::... ... :... . . . .... :: .:
XP_016 QKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDG
1420 1430 1440 1450 1460 1470
XP_016 KAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSLK
1480 1490 1500 1510
1028 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 10:49:33 2016 done: Thu Nov 3 10:49:35 2016
Total Scan time: 12.060 Total Display time: 0.290
Function used was FASTA [36.3.4 Apr, 2011]