Result of FASTA (ccds) for
pF1KA1041
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1041, 622 aa
1>>>pF1KA1041 622 - 622 aa - 622 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.9338+/-0.00113; mu= -5.2490+/- 0.068
mean_var=326.0357+/-67.117, 0's: 0 Z-trim(113.9): 91 B-trim: 377 in 1/51
Lambda= 0.071030
statistics sampled from 14444 (14525) to 14444 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.446), width: 16
Scan time: 4.050
The best scores are: opt bits E(32554)
CCDS30689.1 FOXJ3 gene_id:22887|Hs108|chr1 ( 622) 4282 452.7 6.7e-127
CCDS55594.1 FOXJ3 gene_id:22887|Hs108|chr1 ( 588) 2887 309.7 7e-84
CCDS8587.1 FOXJ2 gene_id:55810|Hs108|chr12 ( 574) 793 95.1 2.7e-19
>>CCDS30689.1 FOXJ3 gene_id:22887|Hs108|chr1 (622 aa)
initn: 4282 init1: 4282 opt: 4282 Z-score: 2391.7 bits: 452.7 E(32554): 6.7e-127
Smith-Waterman score: 4282; 99.7% identity (99.8% similar) in 622 aa overlap (1-622:1-622)
10 20 30 40 50 60
pF1KA1 MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKKNALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKKNALL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 DPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 GWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDALPTRPKKRARSVERASTP
:::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
CCDS30 GWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDVLPTRPKKRARSVERASTP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 YSIDSDSLGMECIISGSASPTLAINTVTNKVTLYNTDQDGSDSPRSSLNNSLSDQSLASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 YSIDSDSLGMECIISGSASPTLAINTVTNKVTLYNTDQDGSDSPRSSLNNSLSDQSLASV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 NLNSVGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDKQLLFSEYNFEDLSASFRSLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NLNSVGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDKQLLFSEYNFEDLSASFRSLY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 KSVFEQSLSQQGLMNIPSESSQQSHTSCTYQHSPSSTVSTHPHSNQSSLSNSHGSGLNTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KSVFEQSLSQQGLMNIPSESSQQSHTSCTYQHSPSSTVSTHPHSNQSSLSNSHGSGLNTT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 GSNSVAQVSLSHPQMHPQPSPHPPHRPHGLPQHPQRSPHPAPHPQQHSQLQSPHPQHPSP
:::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS30 GSNSVAQVSLSHPQMHTQPSPHPPHRPHGLPQHPQRSPHPAPHPQQHSQLQSPHPQHPSP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 HQHIQHHPNHQHQTLTHQAPPPPQQVSCNSGVSNDWYATLDMLKESCRIASSVNWSDVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 HQHIQHHPNHQHQTLTHQAPPPPQQVSCNSGVSNDWYATLDMLKESCRIASSVNWSDVDL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 SQFQGLMESMRQADLKNWSLDQVQFADLCSSLNQFFTQTGLIHSQSNVQQNVCHGAMHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SQFQGLMESMRQADLKNWSLDQVQFADLCSSLNQFFTQTGLIHSQSNVQQNVCHGAMHPT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 KPSQHIGTGNLYIDSRQNLPPSVMPPPGYPHIPQALSTPGTTMAGHHRAMNQQHMMPSQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KPSQHIGTGNLYIDSRQNLPPSVMPPPGYPHIPQALSTPGTTMAGHHRAMNQQHMMPSQA
550 560 570 580 590 600
610 620
pF1KA1 FQMRRSLPPDDIQDDFDWDSIV
::::::::::::::::::::::
CCDS30 FQMRRSLPPDDIQDDFDWDSIV
610 620
>>CCDS55594.1 FOXJ3 gene_id:22887|Hs108|chr1 (588 aa)
initn: 2887 init1: 2887 opt: 2887 Z-score: 1619.5 bits: 309.7 E(32554): 7e-84
Smith-Waterman score: 3993; 94.2% identity (94.4% similar) in 622 aa overlap (1-622:1-588)
10 20 30 40 50 60
pF1KA1 MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKKNALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKKNALL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 DPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 GWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDALPTRPKKRARSVERASTP
:::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS55 GWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDVLPTRPKKRARSVER----
130 140 150 160 170
190 200 210 220 230 240
pF1KA1 YSIDSDSLGMECIISGSASPTLAINTVTNKVTLYNTDQDGSDSPRSSLNNSLSDQSLASV
::::::::::::::::::::::::::::::
CCDS55 ------------------------------VTLYNTDQDGSDSPRSSLNNSLSDQSLASV
180 190 200
250 260 270 280 290 300
pF1KA1 NLNSVGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDKQLLFSEYNFEDLSASFRSLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NLNSVGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDKQLLFSEYNFEDLSASFRSLY
210 220 230 240 250 260
310 320 330 340 350 360
pF1KA1 KSVFEQSLSQQGLMNIPSESSQQSHTSCTYQHSPSSTVSTHPHSNQSSLSNSHGSGLNTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KSVFEQSLSQQGLMNIPSESSQQSHTSCTYQHSPSSTVSTHPHSNQSSLSNSHGSGLNTT
270 280 290 300 310 320
370 380 390 400 410 420
pF1KA1 GSNSVAQVSLSHPQMHPQPSPHPPHRPHGLPQHPQRSPHPAPHPQQHSQLQSPHPQHPSP
:::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS55 GSNSVAQVSLSHPQMHTQPSPHPPHRPHGLPQHPQRSPHPAPHPQQHSQLQSPHPQHPSP
330 340 350 360 370 380
430 440 450 460 470 480
pF1KA1 HQHIQHHPNHQHQTLTHQAPPPPQQVSCNSGVSNDWYATLDMLKESCRIASSVNWSDVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HQHIQHHPNHQHQTLTHQAPPPPQQVSCNSGVSNDWYATLDMLKESCRIASSVNWSDVDL
390 400 410 420 430 440
490 500 510 520 530 540
pF1KA1 SQFQGLMESMRQADLKNWSLDQVQFADLCSSLNQFFTQTGLIHSQSNVQQNVCHGAMHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SQFQGLMESMRQADLKNWSLDQVQFADLCSSLNQFFTQTGLIHSQSNVQQNVCHGAMHPT
450 460 470 480 490 500
550 560 570 580 590 600
pF1KA1 KPSQHIGTGNLYIDSRQNLPPSVMPPPGYPHIPQALSTPGTTMAGHHRAMNQQHMMPSQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KPSQHIGTGNLYIDSRQNLPPSVMPPPGYPHIPQALSTPGTTMAGHHRAMNQQHMMPSQA
510 520 530 540 550 560
610 620
pF1KA1 FQMRRSLPPDDIQDDFDWDSIV
::::::::::::::::::::::
CCDS55 FQMRRSLPPDDIQDDFDWDSIV
570 580
>>CCDS8587.1 FOXJ2 gene_id:55810|Hs108|chr12 (574 aa)
initn: 1146 init1: 562 opt: 793 Z-score: 459.9 bits: 95.1 E(32554): 2.7e-19
Smith-Waterman score: 1237; 39.5% identity (62.7% similar) in 635 aa overlap (16-621:1-573)
10 20 30 40 50
pF1KA1 MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKK---N
:.:.:::::::.:::::::.::.:.: ....: : :.: .
CCDS85 MASDLESSLTSIDWLPQLTLRATIEKLGSASQAGPPGSSRKCSPG
10 20 30 40
60 70 80 90 100 110
pF1KA1 ALLDPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYRE
. :::.::...:. :.:::: ::::.:::.:::::: :::::::::.:::::::::..
CCDS85 SPTDPNATLSKDEAAVHQDGKPRYSYATLITYAINSSPAKKMTLSEIYRWICDNFPYYKN
50 60 70 80 90 100
120 130 140 150 160 170
pF1KA1 AGSGWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDALPTRPKKRARSVERA
:: :::::::::::::::: :::: .:::::::::.::: : : .:: :
CCDS85 AGIGWKNSIRHNLSLNKCFRKVPRPRDDPGKGSYWTIDTCP--DI----SRKR-----RH
110 120 130 140 150
180 190 200 210 220 230
pF1KA1 STPYSIDSDSLGMECIISGSASPTLAINTVTNKVTLYNTDQDGSDSPRSSLNNSLSDQSL
....:: .: .: :: .. .....: .:. :. ::. : :.
CCDS85 PPDDDLSQDSPEQE----ASKSPRGGVAG-SGEASL---PPEGN--PQMSLQ---SPTSI
160 170 180 190 200
240 250 260 270 280 290
pF1KA1 ASVNLNSVGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDKQLLFSEYNFEDLSASFR
:: . ...::: . . ... : : : :: ..: .. .:: ::.::: :::
CCDS85 ASYS-QGTGSVDGGAVAAGASGRESAEGPP---PLYNT-NHDFKFSYSEINFQDLSWSFR
210 220 230 240 250
300 310 320 330 340 350
pF1KA1 SLYKSVFEQSLSQQGLMNIPSESSQQSHTSCTYQHSPSSTVSTHPHSNQSSLSNSHGSGL
.::::..:.: : :::.. .: . ::.. . ...:. .. .
CCDS85 NLYKSMLEKS----------SSSSQHGFSSLLGDIPPSNNY--YMYQQQQPPPPQQQQQQ
260 270 280 290 300
360 370 380 390 400 410
pF1KA1 NTTGSNSVAQVSLSHPQMHPQPSPHPPHRPHGLPQH-PQRSPHPAPHPQQH-SQLQSPHP
. . : :.::.. :. : . : : :. . : .: .. .: :
CCDS85 QQPPQPPPQQ---SQPQQQQAPAQGPSAVGGAPPLHTPSTDGCTPPGGKQAGAEGYGPPP
310 320 330 340 350 360
420 430 440 450 460
pF1KA1 ---QHPSPHQHIQHHPNHQHQTLTH--QAPPPPQ-QVSCNSGVSN-------DWYATLDM
.:: : :: .:: :::. .: : ::::: :.. .. ..: :: ...:
CCDS85 VMAMHPPPLQHGGYHP-HQHHPHSHPAQQPPPPQPQAQGQAPINNTGFAFPSDWCSNIDS
370 380 390 400 410 420
470 480 490 500 510 520
pF1KA1 LKESCRIASSVNWSDVDLSQFQGLMESMRQADLKNWSLDQVQFADLCSSLNQFFTQTGLI
:::: .... .:::... :::. ::::.:::. :::.::: ..:.::.:::.:.:::: .
CCDS85 LKESFKMVNRLNWSSIEQSQFSELMESLRQAEQKNWTLDQHHIANLCDSLNHFLTQTGHV
430 440 450 460 470 480
530 540 550 560 570 580
pF1KA1 HSQSNVQQNVCHGAMHPTKPSQHIGTGNLYIDSRQNLPPSVMPPPGYPHIPQALSTPGTT
:. :. .: :.. :. . ...:. : . :.:. :. :.
CCDS85 PPQG--------GTHRPPAPAR-IADSCALTSGKQESAMSQVNSYGHPQAPHLYPGPSPM
490 500 510 520 530
590 600 610 620
pF1KA1 M-------AGHHRAMNQQHMMPSQAFQMRRSLPP----DDIQDDFDWDSIV
. ::..: .::.: : :.:: ..: :::::: :
CCDS85 YPIPTQDSAGYNRPA--HHMVP------RPSVPPPGANEEIPDDFDWDLIT
540 550 560 570
622 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:19:10 2016 done: Fri Nov 4 01:19:11 2016
Total Scan time: 4.050 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]