Result of FASTA (ccds) for
pF1KA1033
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1033, 1173 aa
1>>>pF1KA1033 1173 - 1173 aa - 1173 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9749+/-0.00137; mu= 18.5616+/- 0.082
mean_var=69.8981+/-14.001, 0's: 0 Z-trim(99.0): 29 B-trim: 116 in 1/48
Lambda= 0.153406
statistics sampled from 5560 (5565) to 5560 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.494), E-opt: 0.2 (0.171), width: 16
Scan time: 4.660
The best scores are: opt bits E(32554)
CCDS41826.1 WASHC4 gene_id:23325|Hs108|chr12 (1173) 7648 1703.0 0
CCDS73514.1 WASHC4 gene_id:23325|Hs108|chr12 (1174) 7636 1700.3 0
>>CCDS41826.1 WASHC4 gene_id:23325|Hs108|chr12 (1173 aa)
initn: 7648 init1: 7648 opt: 7648 Z-score: 9138.8 bits: 1703.0 E(32554): 0
Smith-Waterman score: 7648; 99.9% identity (100.0% similar) in 1173 aa overlap (1-1173:1-1173)
10 20 30 40 50 60
pF1KA1 MAVETLSPDWEFDRVDDGSQKIHAEVQLKNYGKFLEEYTSQLRRIEDALDDSIGDVWDFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAVETLSPDWEFDRVDDGSQKIHAEVQLKNYGKFLEEYTSQLRRIEDALDDSIGDVWDFN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 LDPIALKLLPYEQSSLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLFYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LDPIALKLLPYEQSSLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLFYG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 EGATDASMVEGDCQIQMGRFISFLQELSCFVTRCYEVVMNVVHQLAALYISNKIAPKIIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EGATDASMVEGDCQIQMGRFISFLQELSCFVTRCYEVVMNVVHQLAALYISNKIAPKIIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 TTGVHFQTMYEHLGELLTVLLTLDEIIDNHITLKDHWTMYKRLLKSVHHNPSKFGIQEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TTGVHFQTMYEHLGELLTVLLTLDEIIDNHITLKDHWTMYKRLLKSVHHNPSKFGIQEEK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 LKPFEKFLLKLEGQLLDGMIFQACIEQQFDSLNGGVSVSKNSTFAEEFAHSIRSIFANVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LKPFEKFLLKLEGQLLDGMIFQACIEQQFDSLNGGVSVSKNSTFAEEFAHSIRSIFANVE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 AKLGEPSEIDQRDKYVGICGLFVLHFQIFRTIDKKFYKSLLDICKKVPAITLTANIIWFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AKLGEPSEIDQRDKYVGICGLFVLHFQIFRTIDKKFYKSLLDICKKVPAITLTANIIWFP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 DNFLIQKIPAAAKLLDRKSLQAIKIHRDTFLQQKAQSLTKDVQSYYVFVSSWMMKMESIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DNFLIQKIPAAAKLLDRKSLQAIKIHRDTFLQQKAQSLTKDVQSYYVFVSSWMMKMESIL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 SKEQRMDKFAEDLTNRCNVFIQGFLYAYSISTIIKTTMNLYMSMQKPMTKTSVKALCRLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SKEQRMDKFAEDLTNRCNVFIQGFLYAYSISTIIKTTMNLYMSMQKPMTKTSVKALCRLV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 ELLKAIEHMFYRRSMVVADSVSHITQHLQHQALHSISVAKKRVISDKKYSEQRLDVLSAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ELLKAIEHMFYRRSMVVADSVSHITQHLQHQALHSISVAKKRVISDKKYSEQRLDVLSAL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 VLAENTLNGPSTKQRRLIVSLALSVGTQMKTFKDEELFPLQVVMKKLDLISELRERVQTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VLAENTLNGPSTKQRRLIVSLALSVGTQMKTFKDEELFPLQVVMKKLDLISELRERVQTQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 CDCCFLYWHRAVFPIYLDDVYENAVDAARLHYMFSALRDCVPAMMHARHLESYEILLDCY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CDCCFLYWHRAVFPIYLDDVYENAVDAARLHYMFSALRDCVPAMMHARHLESYEILLDCY
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 DKEIMEILNEHLLDKLCKEIEKDLRLSVHTHLKLDDRNPFKVGMKDLALFFSLNPIRFFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DKEIMEILNEHLLDKLCKEIEKDLRLSVHTHLKLDDRNPFKVGMKDLALFFSLNPIRFFN
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 RFIDIRAYVTHYLDKTFYNLTTVALHDWATYSEMRNLATQRYGLVMTEAHLPSQTLEQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RFIDIRAYVTHYLDKTFYNLTTVALHDWATYSEMRNLATQRYGLVMTEAHLPSQTLEQGL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 DVLEIMRNIHIFVSRYLYNLNNQIFIERTSNNKHLNTINIRHIANSIRTHGTGIMNTTVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DVLEIMRNIHIFVSRYLYNLNNQIFIERTSNNKHLNTINIRHIANSIRTHGTGIMNTTVN
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 FTYQFLKKKFYIFSQFMYDEHIKSRLIKDIRFFREIKDQNDHKYPFDRAEKFNRGIRKLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FTYQFLKKKFYIFSQFMYDEHIKSRLIKDIRFFREIKDQNDHKYPFDRAEKFNRGIRKLG
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 ITPEGQSYLDQFRQLISQIGNAMGYVRMIRSGGLHCSSNAIRFVPDLEDIVNFEELVKEE
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VTPEGQSYLDQFRQLISQIGNAMGYVRMIRSGGLHCSSNAIRFVPDLEDIVNFEELVKEE
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 GLAEETLKAARHLDSVLSDHTRNSAEGTEYFKMLVDVFAPEFRRPKNIHLRNFYIIVPPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GLAEETLKAARHLDSVLSDHTRNSAEGTEYFKMLVDVFAPEFRRPKNIHLRNFYIIVPPL
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA1 TLNFVEHSISCKEKLNKKNKIGAAFTDDGFAMGVAYILKLLDQYREFDSLHWFQSVREKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TLNFVEHSISCKEKLNKKNKIGAAFTDDGFAMGVAYILKLLDQYREFDSLHWFQSVREKY
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA1 LKEIRAVAKQQNVQSASQDEKLLQTMNLTQKRLDVYLQEFELLYFSLSSARIFFRADKTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LKEIRAVAKQQNVQSASQDEKLLQTMNLTQKRLDVYLQEFELLYFSLSSARIFFRADKTA
1090 1100 1110 1120 1130 1140
1150 1160 1170
pF1KA1 AEENQEKKEKEEETKTSNGDLSDSTVSADPVVK
:::::::::::::::::::::::::::::::::
CCDS41 AEENQEKKEKEEETKTSNGDLSDSTVSADPVVK
1150 1160 1170
>>CCDS73514.1 WASHC4 gene_id:23325|Hs108|chr12 (1174 aa)
initn: 7634 init1: 4751 opt: 7636 Z-score: 9124.5 bits: 1700.3 E(32554): 0
Smith-Waterman score: 7636; 99.8% identity (99.9% similar) in 1174 aa overlap (1-1173:1-1174)
10 20 30 40 50 60
pF1KA1 MAVETLSPDWEFDRVDDGSQKIHAEVQLKNYGKFLEEYTSQLRRIEDALDDSIGDVWDFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAVETLSPDWEFDRVDDGSQKIHAEVQLKNYGKFLEEYTSQLRRIEDALDDSIGDVWDFN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 LDPIALKLLPYEQSSLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLFYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LDPIALKLLPYEQSSLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLFYG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 EGATDASMVEGDCQIQMGRFISFLQELSCFVTRCYEVVMNVVHQLAALYISNKIAPKIIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EGATDASMVEGDCQIQMGRFISFLQELSCFVTRCYEVVMNVVHQLAALYISNKIAPKIIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 TTGVHFQTMYEHLGELLTVLLTLDEIIDNHITLKDHWTMYKRLLKSVHHNPSKFGIQEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TTGVHFQTMYEHLGELLTVLLTLDEIIDNHITLKDHWTMYKRLLKSVHHNPSKFGIQEEK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 LKPFEKFLLKLEGQLLDGMIFQACIEQQFDSLNGGVSVSKNSTFAEEFAHSIRSIFANVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LKPFEKFLLKLEGQLLDGMIFQACIEQQFDSLNGGVSVSKNSTFAEEFAHSIRSIFANVE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 AKLGEPSEIDQRDKYVGICGLFVLHFQIFRTIDKKFYKSLLDICKKVPAITLTANIIWFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AKLGEPSEIDQRDKYVGICGLFVLHFQIFRTIDKKFYKSLLDICKKVPAITLTANIIWFP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 DNFLIQKIPAAAKLLDRKSLQAIKIHRDTFLQQKAQSLTKDVQSYYVFVSSWMMKMESIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DNFLIQKIPAAAKLLDRKSLQAIKIHRDTFLQQKAQSLTKDVQSYYVFVSSWMMKMESIL
370 380 390 400 410 420
430 440 450 460 470
pF1KA1 SKEQRMDKFAEDLTNRCNVFIQ-GFLYAYSISTIIKTTMNLYMSMQKPMTKTSVKALCRL
:::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
CCDS73 SKEQRMDKFAEDLTNRCNVFIQVGFLYAYSISTIIKTTMNLYMSMQKPMTKTSVKALCRL
430 440 450 460 470 480
480 490 500 510 520 530
pF1KA1 VELLKAIEHMFYRRSMVVADSVSHITQHLQHQALHSISVAKKRVISDKKYSEQRLDVLSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VELLKAIEHMFYRRSMVVADSVSHITQHLQHQALHSISVAKKRVISDKKYSEQRLDVLSA
490 500 510 520 530 540
540 550 560 570 580 590
pF1KA1 LVLAENTLNGPSTKQRRLIVSLALSVGTQMKTFKDEELFPLQVVMKKLDLISELRERVQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LVLAENTLNGPSTKQRRLIVSLALSVGTQMKTFKDEELFPLQVVMKKLDLISELRERVQT
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA1 QCDCCFLYWHRAVFPIYLDDVYENAVDAARLHYMFSALRDCVPAMMHARHLESYEILLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QCDCCFLYWHRAVFPIYLDDVYENAVDAARLHYMFSALRDCVPAMMHARHLESYEILLDC
610 620 630 640 650 660
660 670 680 690 700 710
pF1KA1 YDKEIMEILNEHLLDKLCKEIEKDLRLSVHTHLKLDDRNPFKVGMKDLALFFSLNPIRFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YDKEIMEILNEHLLDKLCKEIEKDLRLSVHTHLKLDDRNPFKVGMKDLALFFSLNPIRFF
670 680 690 700 710 720
720 730 740 750 760 770
pF1KA1 NRFIDIRAYVTHYLDKTFYNLTTVALHDWATYSEMRNLATQRYGLVMTEAHLPSQTLEQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NRFIDIRAYVTHYLDKTFYNLTTVALHDWATYSEMRNLATQRYGLVMTEAHLPSQTLEQG
730 740 750 760 770 780
780 790 800 810 820 830
pF1KA1 LDVLEIMRNIHIFVSRYLYNLNNQIFIERTSNNKHLNTINIRHIANSIRTHGTGIMNTTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LDVLEIMRNIHIFVSRYLYNLNNQIFIERTSNNKHLNTINIRHIANSIRTHGTGIMNTTV
790 800 810 820 830 840
840 850 860 870 880 890
pF1KA1 NFTYQFLKKKFYIFSQFMYDEHIKSRLIKDIRFFREIKDQNDHKYPFDRAEKFNRGIRKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NFTYQFLKKKFYIFSQFMYDEHIKSRLIKDIRFFREIKDQNDHKYPFDRAEKFNRGIRKL
850 860 870 880 890 900
900 910 920 930 940 950
pF1KA1 GITPEGQSYLDQFRQLISQIGNAMGYVRMIRSGGLHCSSNAIRFVPDLEDIVNFEELVKE
:.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GVTPEGQSYLDQFRQLISQIGNAMGYVRMIRSGGLHCSSNAIRFVPDLEDIVNFEELVKE
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KA1 EGLAEETLKAARHLDSVLSDHTRNSAEGTEYFKMLVDVFAPEFRRPKNIHLRNFYIIVPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EGLAEETLKAARHLDSVLSDHTRNSAEGTEYFKMLVDVFAPEFRRPKNIHLRNFYIIVPP
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KA1 LTLNFVEHSISCKEKLNKKNKIGAAFTDDGFAMGVAYILKLLDQYREFDSLHWFQSVREK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LTLNFVEHSISCKEKLNKKNKIGAAFTDDGFAMGVAYILKLLDQYREFDSLHWFQSVREK
1030 1040 1050 1060 1070 1080
1080 1090 1100 1110 1120 1130
pF1KA1 YLKEIRAVAKQQNVQSASQDEKLLQTMNLTQKRLDVYLQEFELLYFSLSSARIFFRADKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YLKEIRAVAKQQNVQSASQDEKLLQTMNLTQKRLDVYLQEFELLYFSLSSARIFFRADKT
1090 1100 1110 1120 1130 1140
1140 1150 1160 1170
pF1KA1 AAEENQEKKEKEEETKTSNGDLSDSTVSADPVVK
::::::::::::::::::::::::::::::::::
CCDS73 AAEENQEKKEKEEETKTSNGDLSDSTVSADPVVK
1150 1160 1170
1173 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 10:41:19 2016 done: Thu Nov 3 10:41:20 2016
Total Scan time: 4.660 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]