Result of FASTA (ccds) for
pF1KA1018
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1018, 1017 aa
1>>>pF1KA1018 1017 - 1017 aa - 1017 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6414+/-0.000935; mu= 14.8780+/- 0.056
mean_var=83.3549+/-16.626, 0's: 0 Z-trim(106.1): 26 B-trim: 0 in 0/51
Lambda= 0.140478
statistics sampled from 8790 (8798) to 8790 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.27), width: 16
Scan time: 4.650
The best scores are: opt bits E(32554)
CCDS32186.1 FAN1 gene_id:22909|Hs108|chr15 (1017) 6776 1383.6 0
CCDS58344.1 FAN1 gene_id:22909|Hs108|chr15 ( 533) 3422 703.8 2.4e-202
>>CCDS32186.1 FAN1 gene_id:22909|Hs108|chr15 (1017 aa)
initn: 6776 init1: 6776 opt: 6776 Z-score: 7415.3 bits: 1383.6 E(32554): 0
Smith-Waterman score: 6776; 99.9% identity (100.0% similar) in 1017 aa overlap (1-1017:1-1017)
10 20 30 40 50 60
pF1KA1 MMSEGKPPDKKRPRRSLSISKNKKKASNSIISCFNNAPPAKLACPVCSKMVPRYDLNRHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MMSEGKPPDKKRPRRSLSISKNKKKASNSIISCFNNAPPAKLACPVCSKMVPRYDLNRHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 DEMCANNDFVQVDPGQVGLINSNVSMVDLTSVTLEDVTPKKSPPPKTNLTPGQSDSAKRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DEMCANNDFVQVDPGQVGLINSNVSMVDLTSVTLEDVTPKKSPPPKTNLTPGQSDSAKRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 VKQKISPYFKSNDVVCKNQDELRNRSVKVICLGSLASKLSRKYVKAKKSIDKDEEFAGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VKQKISPYFKSNDVVCKNQDELRNRSVKVICLGSLASKLSRKYVKAKKSIDKDEEFAGSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 PQSSKSTVVKSLIDNSSEIEDEDQILENSSQKENVFKCDSLKEECIPEHMVRGSKIMEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PQSSKSTVVKSLIDNSSEIEDEDQILENSSQKENVFKCDSLKEECIPEHMVRGSKIMEAE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 SQKATRECEKSALTPGFSDNAIMLFSPDFTLRNTLKSTSEDSLVKQECIKEVVEKREACH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SQKATRECEKSALTPGFSDNAIMLFSPDFTLRNTLKSTSEDSLVKQECIKEVVEKREACH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 CEEVKMTVASEAKIQLSDSEAKSHSSADDASAWSNIQEAPLQDDSCLNNDIPHSIPLEQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CEEVKMTVASEAKIQLSDSEAKSHSSADDASAWSNIQEAPLQDDSCLNNDIPHSIPLEQG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 SSCNGPGQTTGHPYYLRSFLVVLKTVLENEDDMLLFDEQEKGIVTKFYQLSATGQKLYVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSCNGPGQTTGHPYYLRSFLVVLKTVLENEDDMLLFDEQEKGIVTKFYQLSATGQKLYVR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 LFQRKLSWIKMTKLEYEEIALDLTPVIEELTNAGFLQTESELQELSEVLELLSAPELKSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LFQRKLSWIKMTKLEYEEIALDLTPVIEELTNAGFLQTESELQELSEVLELLSAPELKSL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 AKTFHLANPNGQKQQLVDAFLKLAKQRSVCTWGKNKPGIGAVILKRAKALAGQSVRICKG
::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AKTFHLVNPNGQKQQLVDAFLKLAKQRSVCTWGKNKPGIGAVILKRAKALAGQSVRICKG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 PRAVFSRILLLFSLTDSMEDEDAACGGQGQLSTVLLVNLGRMEFPSYTINRKTHIFQDRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PRAVFSRILLLFSLTDSMEDEDAACGGQGQLSTVLLVNLGRMEFPSYTINRKTHIFQDRD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 DLIRYAAATHMLSDISSAMANGNWEEAKELAQCAKRDWNRLKNHPSLRCHEDLPLFLRCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DLIRYAAATHMLSDISSAMANGNWEEAKELAQCAKRDWNRLKNHPSLRCHEDLPLFLRCF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 TVGWIYTRILSRFVEILQRLHMYEEAVRELESLLSQRIYCPDSRGRWWDRLALNLHQHLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TVGWIYTRILSRFVEILQRLHMYEEAVRELESLLSQRIYCPDSRGRWWDRLALNLHQHLK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 RLEPTIKCITEGLADPEVRTGHRLSLYQRAVRLRESPSCKKFKHLFQQLPEMAVQDVKHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RLEPTIKCITEGLADPEVRTGHRLSLYQRAVRLRESPSCKKFKHLFQQLPEMAVQDVKHV
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 TITGRLCPQRGMCKSVFVMEAGEAADPTTVLCSVEELALAHYRRSGFDQGIHGEGSTFST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TITGRLCPQRGMCKSVFVMEAGEAADPTTVLCSVEELALAHYRRSGFDQGIHGEGSTFST
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 LYGLLLWDIIFMDGIPDVFRNACQAFPLDLCTDSFFTSRRPALEARLQLIHDAPEESLRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LYGLLLWDIIFMDGIPDVFRNACQAFPLDLCTDSFFTSRRPALEARLQLIHDAPEESLRA
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 WVAATWHEQEGRVASLVSWDRFTSLQQAQDLVSCLGGPVLSGVCRHLAADFRHCRGGLPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 WVAATWHEQEGRVASLVSWDRFTSLQQAQDLVSCLGGPVLSGVCRHLAADFRHCRGGLPD
910 920 930 940 950 960
970 980 990 1000 1010
pF1KA1 LVVWNSQSRHFKLVEVKGPNDRLSHKQMIWLAELQKLGAEVEVCHVVAVGAKSQSLS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LVVWNSQSRHFKLVEVKGPNDRLSHKQMIWLAELQKLGAEVEVCHVVAVGAKSQSLS
970 980 990 1000 1010
>>CCDS58344.1 FAN1 gene_id:22909|Hs108|chr15 (533 aa)
initn: 3422 init1: 3422 opt: 3422 Z-score: 3746.4 bits: 703.8 E(32554): 2.4e-202
Smith-Waterman score: 3422; 99.8% identity (100.0% similar) in 526 aa overlap (1-526:1-526)
10 20 30 40 50 60
pF1KA1 MMSEGKPPDKKRPRRSLSISKNKKKASNSIISCFNNAPPAKLACPVCSKMVPRYDLNRHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MMSEGKPPDKKRPRRSLSISKNKKKASNSIISCFNNAPPAKLACPVCSKMVPRYDLNRHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 DEMCANNDFVQVDPGQVGLINSNVSMVDLTSVTLEDVTPKKSPPPKTNLTPGQSDSAKRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DEMCANNDFVQVDPGQVGLINSNVSMVDLTSVTLEDVTPKKSPPPKTNLTPGQSDSAKRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 VKQKISPYFKSNDVVCKNQDELRNRSVKVICLGSLASKLSRKYVKAKKSIDKDEEFAGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VKQKISPYFKSNDVVCKNQDELRNRSVKVICLGSLASKLSRKYVKAKKSIDKDEEFAGSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 PQSSKSTVVKSLIDNSSEIEDEDQILENSSQKENVFKCDSLKEECIPEHMVRGSKIMEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PQSSKSTVVKSLIDNSSEIEDEDQILENSSQKENVFKCDSLKEECIPEHMVRGSKIMEAE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 SQKATRECEKSALTPGFSDNAIMLFSPDFTLRNTLKSTSEDSLVKQECIKEVVEKREACH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SQKATRECEKSALTPGFSDNAIMLFSPDFTLRNTLKSTSEDSLVKQECIKEVVEKREACH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 CEEVKMTVASEAKIQLSDSEAKSHSSADDASAWSNIQEAPLQDDSCLNNDIPHSIPLEQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 CEEVKMTVASEAKIQLSDSEAKSHSSADDASAWSNIQEAPLQDDSCLNNDIPHSIPLEQG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 SSCNGPGQTTGHPYYLRSFLVVLKTVLENEDDMLLFDEQEKGIVTKFYQLSATGQKLYVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SSCNGPGQTTGHPYYLRSFLVVLKTVLENEDDMLLFDEQEKGIVTKFYQLSATGQKLYVR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 LFQRKLSWIKMTKLEYEEIALDLTPVIEELTNAGFLQTESELQELSEVLELLSAPELKSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LFQRKLSWIKMTKLEYEEIALDLTPVIEELTNAGFLQTESELQELSEVLELLSAPELKSL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 AKTFHLANPNGQKQQLVDAFLKLAKQRSVCTWGKNKPGIGAVILKRAKALAGQSVRICKG
::::::.:::::::::::::::::::::::::::::::::::::::
CCDS58 AKTFHLVNPNGQKQQLVDAFLKLAKQRSVCTWGKNKPGIGAVILKRFCWLLLQ
490 500 510 520 530
550 560 570 580 590 600
pF1KA1 PRAVFSRILLLFSLTDSMEDEDAACGGQGQLSTVLLVNLGRMEFPSYTINRKTHIFQDRD
1017 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 10:40:34 2016 done: Thu Nov 3 10:40:35 2016
Total Scan time: 4.650 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]