FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0984, 647 aa
  1>>>pF1KA0984 647 - 647 aa - 647 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1865+/-0.000862; mu= 11.5598+/- 0.052
 mean_var=124.1944+/-26.066, 0's: 0 Z-trim(110.4): 46  B-trim: 1013 in 2/51
 Lambda= 0.115086
 statistics sampled from 11516 (11560) to 11516 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.355), width:  16
 Scan time:  3.970

The best scores are:                                      opt bits E(32554)
CCDS81708.1 TBC1D30 gene_id:23329|Hs108|chr12      ( 647) 4332 730.6 1.6e-210
CCDS53813.1 TBC1D30 gene_id:23329|Hs108|chr12      ( 761) 4332 730.7 1.8e-210


>>CCDS81708.1 TBC1D30 gene_id:23329|Hs108|chr12           (647 aa)
 initn: 4332 init1: 4332 opt: 4332  Z-score: 3893.2  bits: 730.6 E(32554): 1.6e-210
Smith-Waterman score: 4332; 100.0% identity (100.0% similar) in 647 aa overlap (1-647:1-647)

               10        20        30        40        50        60
pF1KA0 MRFTFNERSNPDDDSMGIQIVKDLHRTGCSSYCGQEAEQDRVVLKRVLLAYARWNKTVGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MRFTFNERSNPDDDSMGIQIVKDLHRTGCSSYCGQEAEQDRVVLKRVLLAYARWNKTVGY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 CQGFNILAALILEVMEGNEGDALKIMIYLIDKVLPESYFVNNLRALSVDMAVFRDLLRMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 CQGFNILAALILEVMEGNEGDALKIMIYLIDKVLPESYFVNNLRALSVDMAVFRDLLRMK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 LPELSQHLDTLQRTANKESGGGYEPPLTNVFTMQWFLTLFATCLPNQTVLKIWDSVFFEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LPELSQHLDTLQRTANKESGGGYEPPLTNVFTMQWFLTLFATCLPNQTVLKIWDSVFFEG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 SEIILRVSLAIWAKLGEQIECCETADEFYSTMGRLTQEMLENDLLQSHELMQTVYSMAPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SEIILRVSLAIWAKLGEQIECCETADEFYSTMGRLTQEMLENDLLQSHELMQTVYSMAPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 PFPQLAELREKYTYNITPFPATVKPTSVSGRHSKARDSDEENDPDDEDAVVNAVGCLGPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PFPQLAELREKYTYNITPFPATVKPTSVSGRHSKARDSDEENDPDDEDAVVNAVGCLGPF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 SGFLAPELQKYQKQIKEPNEEQSLRSNNIAELSPGAINSCRSEYHAAFNSMMMERMTTDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SGFLAPELQKYQKQIKEPNEEQSLRSNNIAELSPGAINSCRSEYHAAFNSMMMERMTTDI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 NALKRQYSRIKKKQQQQVHQVYIRADKGPVTSILPSQVNSSPVINHLLLGKKMKMTNRAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 NALKRQYSRIKKKQQQQVHQVYIRADKGPVTSILPSQVNSSPVINHLLLGKKMKMTNRAA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 KNAVIHIPGHTGGKISPVPYEDLKTKLNSPWRTHIRVHKKNMPRTKSHPGCGDTVGLIDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KNAVIHIPGHTGGKISPVPYEDLKTKLNSPWRTHIRVHKKNMPRTKSHPGCGDTVGLIDE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 QNEASKTNGLGAAEAFPSGCTATAGREGSSPEGSTRRTIEGQSPEPVFGDADVDVSAVQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QNEASKTNGLGAAEAFPSGCTATAGREGSSPEGSTRRTIEGQSPEPVFGDADVDVSAVQA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 KLGALELNQRDAAAETELRVHPPCQRHCPEPPSAPEENKATSKAPQGSNSKTPIFSPFPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KLGALELNQRDAAAETELRVHPPCQRHCPEPPSAPEENKATSKAPQGSNSKTPIFSPFPS
              550       560       570       580       590       600

              610       620       630       640       
pF1KA0 VKPLRKSATARNLGLYGPTERTPTVHFPQMSRSFSKPGGGNSGTKKR
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VKPLRKSATARNLGLYGPTERTPTVHFPQMSRSFSKPGGGNSGTKKR
              610       620       630       640       

>>CCDS53813.1 TBC1D30 gene_id:23329|Hs108|chr12           (761 aa)
 initn: 4332 init1: 4332 opt: 4332  Z-score: 3892.1  bits: 730.7 E(32554): 1.8e-210
Smith-Waterman score: 4332; 100.0% identity (100.0% similar) in 647 aa overlap (1-647:115-761)

                                             10        20        30
pF1KA0                               MRFTFNERSNPDDDSMGIQIVKDLHRTGCS
                                     ::::::::::::::::::::::::::::::
CCDS53 TGIPKEWRRKVWLTLADHYLHSIAIDWDKTMRFTFNERSNPDDDSMGIQIVKDLHRTGCS
           90       100       110       120       130       140    

               40        50        60        70        80        90
pF1KA0 SYCGQEAEQDRVVLKRVLLAYARWNKTVGYCQGFNILAALILEVMEGNEGDALKIMIYLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SYCGQEAEQDRVVLKRVLLAYARWNKTVGYCQGFNILAALILEVMEGNEGDALKIMIYLI
          150       160       170       180       190       200    

              100       110       120       130       140       150
pF1KA0 DKVLPESYFVNNLRALSVDMAVFRDLLRMKLPELSQHLDTLQRTANKESGGGYEPPLTNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DKVLPESYFVNNLRALSVDMAVFRDLLRMKLPELSQHLDTLQRTANKESGGGYEPPLTNV
          210       220       230       240       250       260    

              160       170       180       190       200       210
pF1KA0 FTMQWFLTLFATCLPNQTVLKIWDSVFFEGSEIILRVSLAIWAKLGEQIECCETADEFYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FTMQWFLTLFATCLPNQTVLKIWDSVFFEGSEIILRVSLAIWAKLGEQIECCETADEFYS
          270       280       290       300       310       320    

              220       230       240       250       260       270
pF1KA0 TMGRLTQEMLENDLLQSHELMQTVYSMAPFPFPQLAELREKYTYNITPFPATVKPTSVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TMGRLTQEMLENDLLQSHELMQTVYSMAPFPFPQLAELREKYTYNITPFPATVKPTSVSG
          330       340       350       360       370       380    

              280       290       300       310       320       330
pF1KA0 RHSKARDSDEENDPDDEDAVVNAVGCLGPFSGFLAPELQKYQKQIKEPNEEQSLRSNNIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RHSKARDSDEENDPDDEDAVVNAVGCLGPFSGFLAPELQKYQKQIKEPNEEQSLRSNNIA
          390       400       410       420       430       440    

              340       350       360       370       380       390
pF1KA0 ELSPGAINSCRSEYHAAFNSMMMERMTTDINALKRQYSRIKKKQQQQVHQVYIRADKGPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ELSPGAINSCRSEYHAAFNSMMMERMTTDINALKRQYSRIKKKQQQQVHQVYIRADKGPV
          450       460       470       480       490       500    

              400       410       420       430       440       450
pF1KA0 TSILPSQVNSSPVINHLLLGKKMKMTNRAAKNAVIHIPGHTGGKISPVPYEDLKTKLNSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TSILPSQVNSSPVINHLLLGKKMKMTNRAAKNAVIHIPGHTGGKISPVPYEDLKTKLNSP
          510       520       530       540       550       560    

              460       470       480       490       500       510
pF1KA0 WRTHIRVHKKNMPRTKSHPGCGDTVGLIDEQNEASKTNGLGAAEAFPSGCTATAGREGSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 WRTHIRVHKKNMPRTKSHPGCGDTVGLIDEQNEASKTNGLGAAEAFPSGCTATAGREGSS
          570       580       590       600       610       620    

              520       530       540       550       560       570
pF1KA0 PEGSTRRTIEGQSPEPVFGDADVDVSAVQAKLGALELNQRDAAAETELRVHPPCQRHCPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PEGSTRRTIEGQSPEPVFGDADVDVSAVQAKLGALELNQRDAAAETELRVHPPCQRHCPE
          630       640       650       660       670       680    

              580       590       600       610       620       630
pF1KA0 PPSAPEENKATSKAPQGSNSKTPIFSPFPSVKPLRKSATARNLGLYGPTERTPTVHFPQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PPSAPEENKATSKAPQGSNSKTPIFSPFPSVKPLRKSATARNLGLYGPTERTPTVHFPQM
          690       700       710       720       730       740    

              640       
pF1KA0 SRSFSKPGGGNSGTKKR
       :::::::::::::::::
CCDS53 SRSFSKPGGGNSGTKKR
          750       760 




647 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:47:45 2016 done: Sat Nov  5 06:47:45 2016
 Total Scan time:  3.970 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]