FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0983, 683 aa
  1>>>pF1KA0983 683 - 683 aa - 683 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2995+/-0.000995; mu= 15.7518+/- 0.060
 mean_var=104.7833+/-21.198, 0's: 0 Z-trim(107.6): 24  B-trim: 330 in 2/51
 Lambda= 0.125293
 statistics sampled from 9670 (9679) to 9670 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.297), width:  16
 Scan time:  3.640

The best scores are:                                      opt bits E(32554)
CCDS13859.1 THOC5 gene_id:8563|Hs108|chr22         ( 683) 4559 835.2       0


>>CCDS13859.1 THOC5 gene_id:8563|Hs108|chr22              (683 aa)
 initn: 4559 init1: 4559 opt: 4559  Z-score: 4457.6  bits: 835.2 E(32554):    0
Smith-Waterman score: 4559; 99.9% identity (100.0% similar) in 683 aa overlap (1-683:1-683)

               10        20        30        40        50        60
pF1KA0 MSSESSKKRKPKVIRSDGAPAEGKRNRSDTEQEGKYYSEEAEVDLRDPGRDYELYKYTCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSSESSKKRKPKVIRSDGAPAEGKRNRSDTEQEGKYYSEEAEVDLRDPGRDYELYKYTCQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 ELQRLMAEIQDLKSRGGKDVAIEIEERRIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ELQRLMAEIQDLKSRGGKDVAIEIEERRIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 QKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIDLVSLEEFYKEAPPDISKAEVTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIDLVSLEEFYKEAPPDISKAEVTM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 GDPHQQTLARLDWELEQRKRLAEKYRECLSNKEKILKEIEVKKEYLSSLQPRLNSIMQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GDPHQQTLARLDWELEQRKRLAEKYRECLSNKEKILKEIEVKKEYLSSLQPRLNSIMQAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 LPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQATAYGQACDKTLSVAIEGSVDEAKAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQATAYGQACDKTLSVAIEGSVDEAKAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 FKPPEDSQDDESDSDAEEEQTTKRRRPTLGVQLDDKRKEMLKRHPLSVMLDLKCKDDSVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FKPPEDSQDDESDSDAEEEQTTKRRRPTLGVQLDDKRKEMLKRHPLSVMLDLKCKDDSVL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 HLTFYYLMNLNIMTVKAKVTTAMELITPISAGDLLSPDSVLSCLYPGDHGKKTPNPANQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HLTFYYLMNLNIMTVKAKVTTAMELITPISAGDLLSPDSVLSCLYPGDHGKKTPNPANQY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 QFDKVGILTLSDYVLELGHPYLWVQKLGGLHFPKEQPQQTVIADHSLSASHMETTMKLLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QFDKVGILTLSDYVLELGHPYLWVQKLGGLHFPKEQPQQTVIADHSLSASHMETTMKLLK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 TRVQSRLALHKQFASLEHGIVPVTSDCQYLFPAKVVSRLVKWVTIAHEDYMELHFTKDIV
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
CCDS13 TRVQSRLALHKQFASLEHGIVPVTSDCQYLFPAKVVSRLVKWVTVAHEDYMELHFTKDIV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 DAGLAGDTNLYYMALIERGTAKLQAAVVLNPGYSSIPPVFQLCLNWKGEKTNSNDDNIRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DAGLAGDTNLYYMALIERGTAKLQAAVVLNPGYSSIPPVFQLCLNWKGEKTNSNDDNIRA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 MEGEVNVCYKELCGPWPSHQLLTNQLQRLCVLLDVYLETESHDDSVEGPKEFPQEKMCLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MEGEVNVCYKELCGPWPSHQLLTNQLQRLCVLLDVYLETESHDDSVEGPKEFPQEKMCLR
              610       620       630       640       650       660

              670       680   
pF1KA0 LFRGPSRMKPFKYNHPQGFFSHR
       :::::::::::::::::::::::
CCDS13 LFRGPSRMKPFKYNHPQGFFSHR
              670       680   




683 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:14:10 2016 done: Fri Nov  4 01:14:11 2016
 Total Scan time:  3.640 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]