Result of FASTA (ccds) for
pF1KA0917
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0917, 642 aa
1>>>pF1KA0917 642 - 642 aa - 642 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6843+/-0.00108; mu= 17.5064+/- 0.065
mean_var=72.7526+/-14.505, 0's: 0 Z-trim(103.3): 34 B-trim: 0 in 0/50
Lambda= 0.150366
statistics sampled from 7326 (7339) to 7326 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.575), E-opt: 0.2 (0.225), width: 16
Scan time: 3.110
The best scores are: opt bits E(32554)
CCDS9639.1 SCFD1 gene_id:23256|Hs108|chr14 ( 642) 4160 912.3 0
CCDS45092.1 SCFD1 gene_id:23256|Hs108|chr14 ( 575) 3740 821.2 0
CCDS58308.1 SCFD1 gene_id:23256|Hs108|chr14 ( 550) 3568 783.8 0
>>CCDS9639.1 SCFD1 gene_id:23256|Hs108|chr14 (642 aa)
initn: 4160 init1: 4160 opt: 4160 Z-score: 4875.2 bits: 912.3 E(32554): 0
Smith-Waterman score: 4160; 100.0% identity (100.0% similar) in 642 aa overlap (1-642:1-642)
10 20 30 40 50 60
pF1KA0 MAAAAAATAAAAASIRERQTVALKRMLNFNVPHIKNSTGEPVWKVLIYDRFGQDIISPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MAAAAAATAAAAASIRERQTVALKRMLNFNVPHIKNSTGEPVWKVLIYDRFGQDIISPLL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 SVKELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRMCQDLRNQLYESYYLNFIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 SVKELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRMCQDLRNQLYESYYLNFIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 AISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 AISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 ITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 FTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 FTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 ENSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ENSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 IMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 IMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 YFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISTQQAPSEADLEQYKKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 YFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISTQQAPSEADLEQYKKAL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 TDAGCNLNPLQYIKQWKAFTKMASAPASYGSTTTKPMGLLSRVMNTGSQFVMEGVKNLVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 TDAGCNLNPLQYIKQWKAFTKMASAPASYGSTTTKPMGLLSRVMNTGSQFVMEGVKNLVL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 KQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 KQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGN
550 560 570 580 590 600
610 620 630 640
pF1KA0 YIEYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLSQLGQK
::::::::::::::::::::::::::::::::::::::::::
CCDS96 YIEYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLSQLGQK
610 620 630 640
>>CCDS45092.1 SCFD1 gene_id:23256|Hs108|chr14 (575 aa)
initn: 3740 init1: 3740 opt: 3740 Z-score: 4383.5 bits: 821.2 E(32554): 0
Smith-Waterman score: 3740; 100.0% identity (100.0% similar) in 575 aa overlap (68-642:1-575)
40 50 60 70 80 90
pF1KA0 TGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEE
::::::::::::::::::::::::::::::
CCDS45 MGITLHLLLHSDRDPIPDVPAVYFVMPTEE
10 20 30
100 110 120 130 140 150
pF1KA0 NIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLE
40 50 60 70 80 90
160 170 180 190 200 210
pF1KA0 DDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTA
100 110 120 130 140 150
220 230 240 250 260 270
pF1KA0 AEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTY
160 170 180 190 200 210
280 290 300 310 320 330
pF1KA0 QALVHDVLDFHLNRVNLEESSGVENSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QALVHDVLDFHLNRVNLEESSGVENSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEV
220 230 240 250 260 270
340 350 360 370 380 390
pF1KA0 AESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKR
280 290 300 310 320 330
400 410 420 430 440 450
pF1KA0 LIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLF
340 350 360 370 380 390
460 470 480 490 500 510
pF1KA0 LIYYISTQQAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFTKMASAPASYGSTTTKPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LIYYISTQQAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFTKMASAPASYGSTTTKPM
400 410 420 430 440 450
520 530 540 550 560 570
pF1KA0 GLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGN
460 470 480 490 500 510
580 590 600 610 620 630
pF1KA0 DSSVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DSSVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLS
520 530 540 550 560 570
640
pF1KA0 QLGQK
:::::
CCDS45 QLGQK
>>CCDS58308.1 SCFD1 gene_id:23256|Hs108|chr14 (550 aa)
initn: 3568 init1: 3568 opt: 3568 Z-score: 4182.2 bits: 783.8 E(32554): 0
Smith-Waterman score: 3568; 100.0% identity (100.0% similar) in 550 aa overlap (93-642:1-550)
70 80 90 100 110 120
pF1KA0 KELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRMCQDLRNQLYESYYLNFISAI
::::::::::::::::::::::::::::::
CCDS58 MPTEENIDRMCQDLRNQLYESYYLNFISAI
10 20 30
130 140 150 160 170 180
pF1KA0 SRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDIT
40 50 60 70 80 90
190 200 210 220 230 240
pF1KA0 DTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFT
100 110 120 130 140 150
250 260 270 280 290 300
pF1KA0 GDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGVEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGVEN
160 170 180 190 200 210
310 320 330 340 350 360
pF1KA0 SPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIM
220 230 240 250 260 270
370 380 390 400 410 420
pF1KA0 GLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYF
280 290 300 310 320 330
430 440 450 460 470 480
pF1KA0 EYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISTQQAPSEADLEQYKKALTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISTQQAPSEADLEQYKKALTD
340 350 360 370 380 390
490 500 510 520 530 540
pF1KA0 AGCNLNPLQYIKQWKAFTKMASAPASYGSTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 AGCNLNPLQYIKQWKAFTKMASAPASYGSTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQ
400 410 420 430 440 450
550 560 570 580 590 600
pF1KA0 QNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNYI
460 470 480 490 500 510
610 620 630 640
pF1KA0 EYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLSQLGQK
::::::::::::::::::::::::::::::::::::::::
CCDS58 EYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLSQLGQK
520 530 540 550
642 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:07:49 2016 done: Fri Nov 4 01:07:50 2016
Total Scan time: 3.110 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]