Result of FASTA (ccds) for
pF1KA0900
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0900, 502 aa
1>>>pF1KA0900 502 - 502 aa - 502 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 14.3705+/-0.0012; mu= -18.4021+/- 0.073
mean_var=696.8612+/-141.430, 0's: 0 Z-trim(117.3): 51 B-trim: 0 in 0/55
Lambda= 0.048585
statistics sampled from 17949 (17995) to 17949 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.553), width: 16
Scan time: 4.220
The best scores are: opt bits E(32554)
CCDS9318.1 WASF3 gene_id:10810|Hs108|chr13 ( 502) 3451 256.5 4.8e-68
CCDS76626.1 WASF3 gene_id:10810|Hs108|chr13 ( 499) 3103 232.2 1.1e-60
CCDS304.1 WASF2 gene_id:10163|Hs108|chr1 ( 498) 1590 126.1 8.9e-29
CCDS5080.1 WASF1 gene_id:8936|Hs108|chr6 ( 559) 1182 97.6 3.9e-20
CCDS55582.1 WASF2 gene_id:10163|Hs108|chr1 ( 281) 944 80.6 2.6e-15
>>CCDS9318.1 WASF3 gene_id:10810|Hs108|chr13 (502 aa)
initn: 3451 init1: 3451 opt: 3451 Z-score: 1335.0 bits: 256.5 E(32554): 4.8e-68
Smith-Waterman score: 3451; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502)
10 20 30 40 50 60
pF1KA0 MPLVKRNIEPRHLCRGALPEGITSELECVTNSTLAAIIRQLSSLSKHAEDIFGELFNEAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MPLVKRNIEPRHLCRGALPEGITSELECVTNSTLAAIIRQLSSLSKHAEDIFGELFNEAN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 NFYIRANSLQDRIDRLAVKVTQLDSTVEEVSLQDINMKKAFKSSTVQDQQVVSKNSIPNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 NFYIRANSLQDRIDRLAVKVTQLDSTVEEVSLQDINMKKAFKSSTVQDQQVVSKNSIPNP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 VADIYNQSDKPPPLNILTPYRDDKKDGLKFYTDPSYFFDLWKEKMLQDTEDKRKEKRRQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 VADIYNQSDKPPPLNILTPYRDDKKDGLKFYTDPSYFFDLWKEKMLQDTEDKRKEKRRQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 EQKRIDGTTREVKKVRKARNRRQEWNMMAYDKELRPDNRLSQSVYHGASSEGSLSPDTRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 EQKRIDGTTREVKKVRKARNRRQEWNMMAYDKELRPDNRLSQSVYHGASSEGSLSPDTRS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 HASDVTDYSYPATPNHSLHPQPVTPSYAAGDVPPHGPASQAAEHEYRPPSASARHMALNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 HASDVTDYSYPATPNHSLHPQPVTPSYAAGDVPPHGPASQAAEHEYRPPSASARHMALNR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 PQQPPPPPPPQAPEGSQASAPMAPADYGMLPAQIIEYYNPSGPPPPPPPPVIPSAQTAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 PQQPPPPPPPQAPEGSQASAPMAPADYGMLPAQIIEYYNPSGPPPPPPPPVIPSAQTAFV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 SPLQMPMQPPFPASASSTHAAPPHPPSTGLLVTAPPPPGPPPPPPGPPGPGSSLSSSPMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 SPLQMPMQPPFPASASSTHAAPPHPPSTGLLVTAPPPPGPPPPPPGPPGPGSSLSSSPMH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 GPPVAEAKRQEPAQPPISDARSDLLAAIRMGIQLKKVQEQREQEAKREPVGNDVATILSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 GPPVAEAKRQEPAQPPISDARSDLLAAIRMGIQLKKVQEQREQEAKREPVGNDVATILSR
430 440 450 460 470 480
490 500
pF1KA0 RIAVEYSDSDDDSEFDENDWSD
::::::::::::::::::::::
CCDS93 RIAVEYSDSDDDSEFDENDWSD
490 500
>>CCDS76626.1 WASF3 gene_id:10810|Hs108|chr13 (499 aa)
initn: 1882 init1: 1882 opt: 3103 Z-score: 1203.2 bits: 232.2 E(32554): 1.1e-60
Smith-Waterman score: 3103; 90.9% identity (95.4% similar) in 504 aa overlap (1-502:1-499)
10 20 30 40 50 60
pF1KA0 MPLVKRNIEPRHLCRGALPEGITSELECVTNSTLAAIIRQLSSLSKHAEDIFGELFNEAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MPLVKRNIEPRHLCRGALPEGITSELECVTNSTLAAIIRQLSSLSKHAEDIFGELFNEAN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 NFYIRANSLQDRIDRLAVKVTQLDSTVEEVSLQDINMKKAFKSSTVQDQQVVSKNSIPNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NFYIRANSLQDRIDRLAVKVTQLDSTVEEVSLQDINMKKAFKSSTVQDQQVVSKNSIPNP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 VADIYNQSDKPPPLNILTPYRDDKKDGLKFYTDPSYFFDLWKEKMLQDTEDKRKEKRRQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VADIYNQSDKPPPLNILTPYRDDKKDGLKFYTDPSYFFDLWKEKMLQDTEDKRKEKRRQK
130 140 150 160 170 180
190 200 210 220 230
pF1KA0 EQK-RIDGTTREVKKVRKARNRRQEWNMMAYDKELRPD-NRLSQSVYHGASSEGSLSPDT
..: ... . . .:::.:.:..::. . :. : ..: :. :...: . : .
CCDS76 REKHKLNPNRNQQVNVRKVRTRKEEWERRKMGIEFMSDAKKLEQA---GSAKEDRV-P-S
190 200 210 220 230
240 250 260 270 280 290
pF1KA0 RSHASDVTDYSYPATPNHSLHPQPVTPSYAAGDVPPHGPASQAAEHEYRPPSASARHMAL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GSHASDVTDYSYPATPNHSLHPQPVTPSYAAGDVPPHGPASQAAEHEYRPPSASARHMAL
240 250 260 270 280 290
300 310 320 330 340 350
pF1KA0 NRPQQPPPPPPPQAPEGSQASAPMAPADYGMLPAQIIEYYNPSGPPPPPPPPVIPSAQTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NRPQQPPPPPPPQAPEGSQASAPMAPADYGMLPAQIIEYYNPSGPPPPPPPPVIPSAQTA
300 310 320 330 340 350
360 370 380 390 400 410
pF1KA0 FVSPLQMPMQPPFPASASSTHAAPPHPPSTGLLVTAPPPPGPPPPPPGPPGPGSSLSSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FVSPLQMPMQPPFPASASSTHAAPPHPPSTGLLVTAPPPPGPPPPPPGPPGPGSSLSSSP
360 370 380 390 400 410
420 430 440 450 460 470
pF1KA0 MHGPPVAEAKRQEPAQPPISDARSDLLAAIRMGIQLKKVQEQREQEAKREPVGNDVATIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MHGPPVAEAKRQEPAQPPISDARSDLLAAIRMGIQLKKVQEQREQEAKREPVGNDVATIL
420 430 440 450 460 470
480 490 500
pF1KA0 SRRIAVEYSDSDDDSEFDENDWSD
::::::::::::::::::::::::
CCDS76 SRRIAVEYSDSDDDSEFDENDWSD
480 490
>>CCDS304.1 WASF2 gene_id:10163|Hs108|chr1 (498 aa)
initn: 869 init1: 869 opt: 1590 Z-score: 630.1 bits: 126.1 E(32554): 8.9e-29
Smith-Waterman score: 1590; 50.6% identity (70.7% similar) in 516 aa overlap (1-502:1-498)
10 20 30 40 50 60
pF1KA0 MPLVKRNIEPRHLCRGALPEGITSELECVTNSTLAAIIRQLSSLSKHAEDIFGELFNEAN
:::: :::::::::: .:: .. :::::::: ::: .::::.::::.:::::::::..::
CCDS30 MPLVTRNIEPRHLCRQTLP-SVRSELECVTNITLANVIRQLGSLSKYAEDIFGELFTQAN
10 20 30 40 50
70 80 90 100 110 120
pF1KA0 NFYIRANSLQDRIDRLAVKVTQLDSTVEEVSLQDINMKKAFKSSTVQDQQVVSKNSIPNP
.: :..:: .:.::: ::::::: :::::: :: .:::.:::.:::.. ..::.: :
CCDS30 TFASRVSSLAERVDRLQVKVTQLDPKEEEVSLQGINTRKAFRSSTIQDQKLFDRNSLPVP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KA0 VADIYNQSDKPPPLNILTPYRDDKKDGLKFYTDPSYFFDLWKEKMLQDTEDKRKEKRRQK
: . :: : ::::: ::::::: :..::::::::::::::::::::::.: ::::...
CCDS30 VLETYNTCDTPPPLNNLTPYRDDGKEALKFYTDPSYFFDLWKEKMLQDTKDIMKEKRKHR
120 130 140 150 160 170
190 200 210 220 230
pF1KA0 EQKRIDGTTREVKKVRKARNRRQEWNMMAYDKEL-RPDNRLSQSVYHGA--SSEGSLSPD
..:. :. .: . :: ..:..::. : . .:. . ..:. : : . ..::..
CCDS30 KEKK-DNPNRGNVNPRKIKTRKEEWEKMKMGQEFVESKEKLGTSGYPPTLVYQNGSIG--
180 190 200 210 220 230
240 250 260 270 280 290
pF1KA0 TRSHASDVTDYSYPATPNHSLHPQPVTPSYAAGDVPPHGPA--SQAAEHEYRPPSASARH
. .: ::: :. . .: .::.. ..:: :: : .... :. ..
CCDS30 ---CVENVDASSYPPPPQSDSASSP-SPSFSEDNLPPP-PAEFSYPVDNQRGSGLAGPKR
240 250 260 270 280 290
300 310 320 330 340
pF1KA0 MALNRPQQPPPPPPPQAPEGSQ-------ASAPMAPADYGMLPAQIIEYYNPSGPPPPPP
.. :..::: :: .: : . : : : :. : .. : ::::
CCDS30 SSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPS
300 310 320 330 340 350
350 360 370 380 390 400
pF1KA0 PPVIPSAQTAFVSPLQMPMQPPFPASASSTHAAPPHPPSTGLLVTAPPPPGPPPPPPGPP
:: .: . :..: : :: ::. : :: :: ::::: :::::::::
CCDS30 PPSFPP-HPDFAAP---PPPPPPPAADYPTLPPPPLSQPTG---GAPPPP-PPPPPPGPP
360 370 380 390 400
410 420 430 440 450 460
pF1KA0 GPG-SSLSSSPMHGPPVAEAKRQEPAQPPISDARSDLLAAIRMGIQLKKVQEQREQEAKR
: .. ...: ::.... . . . : .::::::::.:::.:.::..:.:::::: ::
CCDS30 PPPFTGADGQPAIPPPLSDTTKPKSSLPAVSDARSDLLSAIRQGFQLRRVEEQREQE-KR
410 420 430 440 450 460
470 480 490 500
pF1KA0 EPVGNDVATILSRRIAVEYSDSDDDS-EFDENDWSD
. ::::::::::::::::::::.::: ::::.::::
CCDS30 DVVGNDVATILSRRIAVEYSDSEDDSSEFDEDDWSD
470 480 490
>>CCDS5080.1 WASF1 gene_id:8936|Hs108|chr6 (559 aa)
initn: 1494 init1: 915 opt: 1182 Z-score: 474.9 bits: 97.6 E(32554): 3.9e-20
Smith-Waterman score: 1424; 48.2% identity (63.3% similar) in 537 aa overlap (1-477:1-534)
10 20 30 40 50 60
pF1KA0 MPLVKRNIEPRHLCRGALPEGITSELECVTNSTLAAIIRQLSSLSKHAEDIFGELFNEAN
::::::::.:::::. :::.:: .::::::: .:: ::::::::::.::::::::::::.
CCDS50 MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 NFYIRANSLQDRIDRLAVKVTQLDSTVEEVSLQDINMKKAFKSSTVQDQQVVSKNSIPNP
.: .:.::::.:.:::.:.::::: ::.:::::.:.:::.:::.::::. .....: :
CCDS50 SFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 VADIYNQSDKPPPLNILTPYRDDKKDGLKFYTDPSYFFDLWKEKMLQDTEDKRKEKRRQK
. . :. ..::::::::::::: :.::::::.::::::::::::::::::::::::.::
CCDS50 LQETYDVCEQPPPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQK
130 140 150 160 170 180
190 200 210 220 230
pF1KA0 EQKRIDGTTREVKKVRKARNRRQEWNMMAYDKELRPD--NRLSQS--VYHGASSEGSLSP
:: .: . : : ..::.::. .: :: : : : . : .: .:. :
CCDS50 -QKNLDRPHEPEKVPRAPHDRRREWQKLAQGPELAEDDANLLHKHIEVANGPASHFETRP
190 200 210 220 230
240 250 260 270 280
pF1KA0 DTRSHASDVTDYSYPATPNHSL---------------H-PQPVTPSYAAGDVPPHGPASQ
.: : .:: : : .. : : : : ..:::. : .
CCDS50 QTYVDHMD-GSYSLSALPFSQMSELLTRAEERVLVRPHEPPPPPPMHGAGDAKPIPTCIS
240 250 260 270 280 290
290 300 310 320 330
pF1KA0 AAEH--EYRPPS-ASARHMALNRPQQPPPPPP-PQAPEGSQASAPMA----PADYGMLPA
.: : :: : :..: .. : :::::: :.: :. : :. : :
CCDS50 SATGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPP
300 310 320 330 340 350
340 350 360 370 380
pF1KA0 QIIEYYNPSGPPPPPP----PPVIPSAQTAFVSPLQMPMQPPFPASASSTHAAPPHPPST
:. :::: : : :. : .. :: .: .:: .: ...: ::
CCDS50 PATALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQP-SPPVARAAPVCETVPVHPLPQ
360 370 380 390 400 410
390 400 410 420
pF1KA0 GLLVTAPPPPGPPP-PPPG--------------PPG---------PGSSLSSSPMHGP--
: . :::: ::: :::: ::. :: . : :
CCDS50 GEVQGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQ
420 430 440 450 460 470
430 440 450 460 470 480
pF1KA0 --PVAEAKRQEPAQPPISDARSDLLAAIRMGIQLKKVQEQREQEAKREPVGNDVATILSR
:..: ::. . : :::::: :: ::: ::::.::.::::::::.: . ::::::
CCDS50 VIPASEPKRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIENDVATILSR
480 490 500 510 520 530
490 500
pF1KA0 RIAVEYSDSDDDSEFDENDWSD
CCDS50 RIAVEYSDSEDDSEFDEVDWLE
540 550
>>CCDS55582.1 WASF2 gene_id:10163|Hs108|chr1 (281 aa)
initn: 921 init1: 746 opt: 944 Z-score: 388.5 bits: 80.6 E(32554): 2.6e-15
Smith-Waterman score: 944; 54.4% identity (76.2% similar) in 281 aa overlap (1-278:1-272)
10 20 30 40 50 60
pF1KA0 MPLVKRNIEPRHLCRGALPEGITSELECVTNSTLAAIIRQLSSLSKHAEDIFGELFNEAN
:::: :::::::::: .:: .. :::::::: ::: .::::.::::.:::::::::..::
CCDS55 MPLVTRNIEPRHLCRQTLP-SVRSELECVTNITLANVIRQLGSLSKYAEDIFGELFTQAN
10 20 30 40 50
70 80 90 100 110 120
pF1KA0 NFYIRANSLQDRIDRLAVKVTQLDSTVEEVSLQDINMKKAFKSSTVQDQQVVSKNSIPNP
.: :..:: .:.::: ::::::: :::::: :: .:::.:::.:::.. ..::.: :
CCDS55 TFASRVSSLAERVDRLQVKVTQLDPKEEEVSLQGINTRKAFRSSTIQDQKLFDRNSLPVP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KA0 VADIYNQSDKPPPLNILTPYRDDKKDGLKFYTDPSYFFDLWKEKMLQDTEDKRKEKRRQK
: . :: : ::::: ::::::: :..::::::::::::::::::::::.: ::::...
CCDS55 VLETYNTCDTPPPLNNLTPYRDDGKEALKFYTDPSYFFDLWKEKMLQDTKDIMKEKRKHR
120 130 140 150 160 170
190 200 210 220 230
pF1KA0 EQKRIDGTTREVKKVRKARNRRQEWNMMAYDKEL-RPDNRLSQSVYHGA--SSEGSLSPD
..:. :. .: . :: ..:..::. : . .:. . ..:. : : . ..::..
CCDS55 KEKK-DNPNRGNVNPRKIKTRKEEWEKMKMGQEFVESKEKLGTSGYPPTLVYQNGSIG--
180 190 200 210 220 230
240 250 260 270 280 290
pF1KA0 TRSHASDVTDYSYPATPNHSLHPQPVTPSYAAGDVPPHGPASQAAEHEYRPPSASARHMA
. .: ::: :. . .: .::.. ..:: ::
CCDS55 ---CVENVDASSYPPPPQSDSASSP-SPSFSEDNLPPP-PAEFRFSAAQG
240 250 260 270 280
300 310 320 330 340 350
pF1KA0 LNRPQQPPPPPPPQAPEGSQASAPMAPADYGMLPAQIIEYYNPSGPPPPPPPPVIPSAQT
502 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:54:40 2016 done: Wed Nov 2 19:54:41 2016
Total Scan time: 4.220 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]