FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0892, 613 aa
  1>>>pF1KA0892 613 - 613 aa - 613 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7165+/-0.000935; mu= 17.0715+/- 0.056
 mean_var=69.1015+/-14.014, 0's: 0 Z-trim(105.8): 14  B-trim: 534 in 1/50
 Lambda= 0.154287
 statistics sampled from 8627 (8628) to 8627 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.265), width:  16
 Scan time:  3.240

The best scores are:                                      opt bits E(32554)
CCDS32969.2 MAU2 gene_id:23383|Hs108|chr19         ( 613) 4090 919.7       0


>>CCDS32969.2 MAU2 gene_id:23383|Hs108|chr19              (613 aa)
 initn: 4090 init1: 4090 opt: 4090  Z-score: 4915.8  bits: 919.7 E(32554):    0
Smith-Waterman score: 4090; 100.0% identity (100.0% similar) in 613 aa overlap (1-613:1-613)

               10        20        30        40        50        60
pF1KA0 MAAQAAAAAQAAAAQAAQAEAADSWYLALLGFAEHFRTSSPPKIRLCVHCLQAVFPFKPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAAQAAAAAQAAAAQAAQAEAADSWYLALLGFAEHFRTSSPPKIRLCVHCLQAVFPFKPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 QRIEARTHLQLGSVLYHHTKNSEQARSHLEKAWLISQQIPQFEDVKFEAASLLSELYCQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QRIEARTHLQLGSVLYHHTKNSEQARSHLEKAWLISQQIPQFEDVKFEAASLLSELYCQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 NSVDAAKPLLRKAIQISQQTPYWHCRLLFQLAQLHTLEKDLVSACDLLGVGAEYARVVGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NSVDAAKPLLRKAIQISQQTPYWHCRLLFQLAQLHTLEKDLVSACDLLGVGAEYARVVGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 EYTRALFLLSKGMLLLMERKLQEVHPLLTLCGQIVENWQGNPIQKESLRVFFLVLQVTHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EYTRALFLLSKGMLLLMERKLQEVHPLLTLCGQIVENWQGNPIQKESLRVFFLVLQVTHY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 LDAGQVKSVKPCLKQLQQCIQTISTLHDDEILPSNPADLFHWLPKEHMCVLVYLVTVMHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LDAGQVKSVKPCLKQLQQCIQTISTLHDDEILPSNPADLFHWLPKEHMCVLVYLVTVMHS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 MQAGYLEKAQKYTDKALMQLEKLKMLDCSPILSSFQVILLEHIIMCRLVTGHKATALQEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MQAGYLEKAQKYTDKALMQLEKLKMLDCSPILSSFQVILLEHIIMCRLVTGHKATALQEI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 SQVCQLCQQSPRLFSNHAAQLHTLLGLYCVSVNCMDNAEAQFTTALRLTNHQELWAFIVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SQVCQLCQQSPRLFSNHAAQLHTLLGLYCVSVNCMDNAEAQFTTALRLTNHQELWAFIVT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 NLASVYIREGNRHQEVLYSLLERINPDHSFPVSSHCLRAAAFYVRGLFSFFQGRYNEAKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NLASVYIREGNRHQEVLYSLLERINPDHSFPVSSHCLRAAAFYVRGLFSFFQGRYNEAKR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 FLRETLKMSNAEDLNRLTACSLVLLGHIFYVLGNHRESNNMVVPAMQLASKIPDMSVQLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FLRETLKMSNAEDLNRLTACSLVLLGHIFYVLGNHRESNNMVVPAMQLASKIPDMSVQLW
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 SSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEHNLITWTDGPPPVQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEHNLITWTDGPPPVQFQ
              550       560       570       580       590       600

              610   
pF1KA0 AQNGPNTSLASLL
       :::::::::::::
CCDS32 AQNGPNTSLASLL
              610   




613 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 10:30:08 2016 done: Thu Nov  3 10:30:09 2016
 Total Scan time:  3.240 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]