FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0830, 500 aa
  1>>>pF1KA0830 500 - 500 aa - 500 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5575+/-0.000827; mu= 17.1546+/- 0.050
 mean_var=72.4187+/-14.782, 0's: 0 Z-trim(107.4): 14  B-trim: 54 in 1/49
 Lambda= 0.150712
 statistics sampled from 9556 (9562) to 9556 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.294), width:  16
 Scan time:  3.370

The best scores are:                                      opt bits E(32554)
CCDS41699.1 ENDOD1 gene_id:23052|Hs108|chr11       ( 500) 3301 727.0 1.1e-209


>>CCDS41699.1 ENDOD1 gene_id:23052|Hs108|chr11            (500 aa)
 initn: 3301 init1: 3301 opt: 3301  Z-score: 3877.8  bits: 727.0 E(32554): 1.1e-209
Smith-Waterman score: 3301; 100.0% identity (100.0% similar) in 500 aa overlap (1-500:1-500)

               10        20        30        40        50        60
pF1KA0 MGTARWLALGSLFALAGLLEGRLVGEEEAGFGECDKFFYAGTPPAGLAADSHVKICQRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MGTARWLALGSLFALAGLLEGRLVGEEEAGFGECDKFFYAGTPPAGLAADSHVKICQRAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 GAERFATLYSTRDRIPVYSAFRAPRPAPGGAEQRWLVEPQIDDPNSNLEEAINEAEAITS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GAERFATLYSTRDRIPVYSAFRAPRPAPGGAEQRWLVEPQIDDPNSNLEEAINEAEAITS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 VNSLGSKQALNTDYLDSDYQRGQLYPFSLSSDVQVATFTLTNSAPMTQSFQERWYVNLHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VNSLGSKQALNTDYLDSDYQRGQLYPFSLSSDVQVATFTLTNSAPMTQSFQERWYVNLHS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 LMDRALTPQCGSGEDLYILTGTVPSDYRVKDKVAVPEFVWLAACCAVPGGGWAMGFVKHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LMDRALTPQCGSGEDLYILTGTVPSDYRVKDKVAVPEFVWLAACCAVPGGGWAMGFVKHT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 RDSDIIEDVMVKDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQDEERMVQSQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RDSDIIEDVMVKDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQDEERMVQSQK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 SSSPLSSTRSKRSTLLPPEASEGSSSFLGKLMGFIATPFIKLFQLIYYLVVAILKNIVYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SSSPLSSTRSKRSTLLPPEASEGSSSFLGKLMGFIATPFIKLFQLIYYLVVAILKNIVYF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 LWCVTKQVINGIESCLYRLGSATISYFMAIGEELVSIPWKVLKVVAKVIRALLRILCCLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LWCVTKQVINGIESCLYRLGSATISYFMAIGEELVSIPWKVLKVVAKVIRALLRILCCLL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 KAICRVLSIPVRVLVDVATFPVYTMGAIPIVCKDIALGLGGTVSLLFDTAFGTLGGLFQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KAICRVLSIPVRVLVDVATFPVYTMGAIPIVCKDIALGLGGTVSLLFDTAFGTLGGLFQV
              430       440       450       460       470       480

              490       500
pF1KA0 VFSVCKRIGYKVTFDNSGEL
       ::::::::::::::::::::
CCDS41 VFSVCKRIGYKVTFDNSGEL
              490       500




500 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 19:49:02 2016 done: Wed Nov  2 19:49:02 2016
 Total Scan time:  3.370 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]