Result of FASTA (ccds) for
pF1KA0804
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0804, 1426 aa
1>>>pF1KA0804 1426 - 1426 aa - 1426 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7563+/-0.00131; mu= 15.7792+/- 0.078
mean_var=95.3738+/-18.711, 0's: 0 Z-trim(101.5): 47 B-trim: 2 in 1/50
Lambda= 0.131329
statistics sampled from 6536 (6545) to 6536 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.55), E-opt: 0.2 (0.201), width: 16
Scan time: 4.550
The best scores are: opt bits E(32554)
CCDS46972.1 VPS8 gene_id:23355|Hs108|chr3 (1426) 9394 1791.7 0
CCDS46971.1 VPS8 gene_id:23355|Hs108|chr3 (1428) 9380 1789.0 0
>>CCDS46972.1 VPS8 gene_id:23355|Hs108|chr3 (1426 aa)
initn: 9394 init1: 9394 opt: 9394 Z-score: 9615.2 bits: 1791.7 E(32554): 0
Smith-Waterman score: 9394; 99.9% identity (100.0% similar) in 1426 aa overlap (1-1426:1-1426)
10 20 30 40 50 60
pF1KA0 MENEPDHENVEQSLCAKTSEEELNKSFNLEASLSKFSYIDMDKELEFKNDLIDDKEFDIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MENEPDHENVEQSLCAKTSEEELNKSFNLEASLSKFSYIDMDKELEFKNDLIDDKEFDIP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 QVDTPPTLESILNETDDEDESFVLEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKK
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS46 QVDTPPTLESILNETDDEDESFILEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFDQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 NQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 PGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 SKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 NYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDSVE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 KLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 QIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASKRK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 AIVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRKDLLFSQMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AIVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRKDLLFSQMY
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 DKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVEALIVHMDIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVEALIVHMDIT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 SLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVVMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVVMG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 NKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASPEEEIYPYIRTLLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASPEEEIYPYIRTLLH
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 FDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 AKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEK
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 AEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAM
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 DHIEELVSLKPCKAAELVATHFSGHIETVIKKLQNQVLLFKFLRSLLDPREGIHVNQELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DHIEELVSLKPCKAAELVATHFSGHIETVIKKLQNQVLLFKFLRSLLDPREGIHVNQELL
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 QISPCITEQFIELLCQFNPTQVIETLQVLECYRLEETIQITQKYQLHEVTAYLLEKKGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QISPCITEQFIELLCQFNPTQVIETLQVLECYRLEETIQITQKYQLHEVTAYLLEKKGDI
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 HGAFLIMLERLQSKLQEVTHQGENTKEDPSLKDVEDTMVETIALCQRNSHNLNQQQREAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HGAFLIMLERLQSKLQEVTHQGENTKEDPSLKDVEDTMVETIALCQRNSHNLNQQQREAL
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 WFPLLEAMMAPQKLSSSAIPHLYSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYGKG
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS46 WFPLLEAMMAPQKLSSSAIPHLHSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYGKG
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 KLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSICL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSICL
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 QQYKRRQEMADEIIVFSCGHLYHSFCLQNKECTVEFEGQTRWTCYKCSSSNKVGKLSENS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QQYKRRQEMADEIIVFSCGHLYHSFCLQNKECTVEFEGQTRWTCYKCSSSNKVGKLSENS
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 SEIKKGRITPSQVKMSPSYHQSKGDPTAKKGTSEPVLDPQQIQAFDQLCRLYRGSSRLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SEIKKGRITPSQVKMSPSYHQSKGDPTAKKGTSEPVLDPQQIQAFDQLCRLYRGSSRLAL
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420
pF1KA0 LTELSQNRSSESYRPFSGSQSAPAFNSIFQNENFQLQLIPPPVTED
::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LTELSQNRSSESYRPFSGSQSAPAFNSIFQNENFQLQLIPPPVTED
1390 1400 1410 1420
>>CCDS46971.1 VPS8 gene_id:23355|Hs108|chr3 (1428 aa)
initn: 8270 init1: 8270 opt: 9380 Z-score: 9600.9 bits: 1789.0 E(32554): 0
Smith-Waterman score: 9380; 99.7% identity (99.9% similar) in 1428 aa overlap (1-1426:1-1428)
10 20 30 40 50 60
pF1KA0 MENEPDHENVEQSLCAKTSEEELNKSFNLEASLSKFSYIDMDKELEFKNDLIDDKEFDIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MENEPDHENVEQSLCAKTSEEELNKSFNLEASLSKFSYIDMDKELEFKNDLIDDKEFDIP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 QVDTPPTLESILNETDDEDESFVLEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKK
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS46 QVDTPPTLESILNETDDEDESFILEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKK
70 80 90 100 110 120
130 140 150 160 170
pF1KA0 KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIF--
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFGK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA0 DQNQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DQNQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDA
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA0 HPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEP
250 260 270 280 290 300
300 310 320 330 340 350
pF1KA0 LHSKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LHSKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVA
310 320 330 340 350 360
360 370 380 390 400 410
pF1KA0 VQNYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VQNYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDS
370 380 390 400 410 420
420 430 440 450 460 470
pF1KA0 VEKLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VEKLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSY
430 440 450 460 470 480
480 490 500 510 520 530
pF1KA0 GGQIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GGQIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASK
490 500 510 520 530 540
540 550 560 570 580 590
pF1KA0 RKAIVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRKDLLFSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RKAIVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRKDLLFSQ
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA0 MYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVEALIVHMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVEALIVHMD
610 620 630 640 650 660
660 670 680 690 700 710
pF1KA0 ITSLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ITSLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVV
670 680 690 700 710 720
720 730 740 750 760 770
pF1KA0 MGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASPEEEIYPYIRTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASPEEEIYPYIRTL
730 740 750 760 770 780
780 790 800 810 820 830
pF1KA0 LHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLAR
790 800 810 820 830 840
840 850 860 870 880 890
pF1KA0 QLAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QLAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMA
850 860 870 880 890 900
900 910 920 930 940 950
pF1KA0 EKAEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EKAEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQK
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KA0 AMDHIEELVSLKPCKAAELVATHFSGHIETVIKKLQNQVLLFKFLRSLLDPREGIHVNQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AMDHIEELVSLKPCKAAELVATHFSGHIETVIKKLQNQVLLFKFLRSLLDPREGIHVNQE
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KA0 LLQISPCITEQFIELLCQFNPTQVIETLQVLECYRLEETIQITQKYQLHEVTAYLLEKKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LLQISPCITEQFIELLCQFNPTQVIETLQVLECYRLEETIQITQKYQLHEVTAYLLEKKG
1030 1040 1050 1060 1070 1080
1080 1090 1100 1110 1120 1130
pF1KA0 DIHGAFLIMLERLQSKLQEVTHQGENTKEDPSLKDVEDTMVETIALCQRNSHNLNQQQRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DIHGAFLIMLERLQSKLQEVTHQGENTKEDPSLKDVEDTMVETIALCQRNSHNLNQQQRE
1090 1100 1110 1120 1130 1140
1140 1150 1160 1170 1180 1190
pF1KA0 ALWFPLLEAMMAPQKLSSSAIPHLYSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYG
::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS46 ALWFPLLEAMMAPQKLSSSAIPHLHSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYG
1150 1160 1170 1180 1190 1200
1200 1210 1220 1230 1240 1250
pF1KA0 KGKLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KGKLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSI
1210 1220 1230 1240 1250 1260
1260 1270 1280 1290 1300 1310
pF1KA0 CLQQYKRRQEMADEIIVFSCGHLYHSFCLQNKECTVEFEGQTRWTCYKCSSSNKVGKLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CLQQYKRRQEMADEIIVFSCGHLYHSFCLQNKECTVEFEGQTRWTCYKCSSSNKVGKLSE
1270 1280 1290 1300 1310 1320
1320 1330 1340 1350 1360 1370
pF1KA0 NSSEIKKGRITPSQVKMSPSYHQSKGDPTAKKGTSEPVLDPQQIQAFDQLCRLYRGSSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NSSEIKKGRITPSQVKMSPSYHQSKGDPTAKKGTSEPVLDPQQIQAFDQLCRLYRGSSRL
1330 1340 1350 1360 1370 1380
1380 1390 1400 1410 1420
pF1KA0 ALLTELSQNRSSESYRPFSGSQSAPAFNSIFQNENFQLQLIPPPVTED
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ALLTELSQNRSSESYRPFSGSQSAPAFNSIFQNENFQLQLIPPPVTED
1390 1400 1410 1420
1426 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:44:58 2016 done: Wed Nov 2 19:44:59 2016
Total Scan time: 4.550 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]