Result of FASTA (omim) for
pF1KA0791
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0791, 1332 aa
1>>>pF1KA0791 1332 - 1332 aa - 1332 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3401+/-0.000469; mu= 8.9444+/- 0.029
mean_var=158.1275+/-33.047, 0's: 0 Z-trim(114.6): 4 B-trim: 1186 in 1/50
Lambda= 0.101993
statistics sampled from 24482 (24486) to 24482 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.287), width: 16
Scan time: 17.760
The best scores are: opt bits E(85289)
NP_004289 (OMIM: 606694,615770) nuclear pore compl (1332) 8831 1312.7 0
NP_705618 (OMIM: 606694,615770) nuclear pore compl (1391) 8831 1312.7 0
XP_011512467 (OMIM: 606694,615770) PREDICTED: nucl ( 892) 5469 817.9 0
NP_001265241 (OMIM: 606694,615770) nuclear pore co (1327) 5061 757.9 1e-217
>>NP_004289 (OMIM: 606694,615770) nuclear pore complex p (1332 aa)
initn: 8831 init1: 8831 opt: 8831 Z-score: 7027.6 bits: 1312.7 E(85289): 0
Smith-Waterman score: 8831; 100.0% identity (100.0% similar) in 1332 aa overlap (1-1332:1-1332)
10 20 30 40 50 60
pF1KA0 MSDMDYPLQGPGLLSVPNLPEISSIRRVPLPPELVEQFGHMQCNCMMGVFPPISRAWLTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSDMDYPLQGPGLLSVPNLPEISSIRRVPLPPELVEQFGHMQCNCMMGVFPPISRAWLTI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 DSDIFMWNYEDGGDLAYFDGLSETILAVGLVKPKAGIFQPHVRHLLVLATPVDIVILGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DSDIFMWNYEDGGDLAYFDGLSETILAVGLVKPKAGIFQPHVRHLLVLATPVDIVILGLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 YANLQTGSGVLNDSLSGGMQLLPDPLYSLPTDNTYLLTITSTDNGRIFLAGKDGCLYEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YANLQTGSGVLNDSLSGGMQLLPDPLYSLPTDNTYLLTITSTDNGRIFLAGKDGCLYEVA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 YQAEAGWFSQRCRKINHSKSSLSFLVPSLLQFTFSEDDPILQIAIDNSRNILYTRSEKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YQAEAGWFSQRCRKINHSKSSLSFLVPSLLQFTFSEDDPILQIAIDNSRNILYTRSEKGV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 IQVYDLGQDGQGMSRVASVSQNAIVSAAGNIARTIDRSVFKPIVQIAVIENSESLDCQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IQVYDLGQDGQGMSRVASVSQNAIVSAAGNIARTIDRSVFKPIVQIAVIENSESLDCQLL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 AVTHAGVRLYFSTCPFRQPLARPNTLTLVHVRLPPGFSASSTVEKPSKVHRALYSKGILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AVTHAGVRLYFSTCPFRQPLARPNTLTLVHVRLPPGFSASSTVEKPSKVHRALYSKGILL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 MAASENEDNDILWCVNHDTFPFQKPMMETQMTAGVDGHSWALSAIDELKVDKIITPLNKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAASENEDNDILWCVNHDTFPFQKPMMETQMTAGVDGHSWALSAIDELKVDKIITPLNKD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 HIPITDSPVVVQQHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGGDGEEIERFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 HIPITDSPVVVQQHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGGDGEEIERFF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 KLHQEDQACATCLILACSTAACDREVSAWATRAFFRYGGEAQMRFPTTLPPPSNVGPILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KLHQEDQACATCLILACSTAACDREVSAWATRAFFRYGGEAQMRFPTTLPPPSNVGPILG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 SPVYSSSPVPSGSPYPNPSFLGTPSHGIQPPAMSTPVCALGNPATQATNMSCVTGPEIVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SPVYSSSPVPSGSPYPNPSFLGTPSHGIQPPAMSTPVCALGNPATQATNMSCVTGPEIVY
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 SGKHNGICIYFSRIMGNIWDASLVVERIFKSGNREITAIESSVPCQLLESVLQELKGLQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SGKHNGICIYFSRIMGNIWDASLVVERIFKSGNREITAIESSVPCQLLESVLQELKGLQE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 FLDRNSQFAGGPLGNPNTTAKVQQRLIGFMRPENGNPQQMQQELQRKFHEAQLSEKISLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FLDRNSQFAGGPLGNPNTTAKVQQRLIGFMRPENGNPQQMQQELQRKFHEAQLSEKISLQ
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 AIQQLVRKSYQALALWKLLCEHQFTIIVAELQKELQEQLKITTFKDLVIRDKELTGALIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AIQQLVRKSYQALALWKLLCEHQFTIIVAELQKELQEQLKITTFKDLVIRDKELTGALIA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 SLINCYIRDNAAVDGISLHLQDICPLLYSTDDAICSKANELLQRSRQVQNKTEKERMLRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SLINCYIRDNAAVDGISLHLQDICPLLYSTDDAICSKANELLQRSRQVQNKTEKERMLRE
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 SLKEYQKISNQVDLSNVCAQYRQVRFYEGVVELSLTAAEKKDPQGLGLHFYKHGEPEEDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SLKEYQKISNQVDLSNVCAQYRQVRFYEGVVELSLTAAEKKDPQGLGLHFYKHGEPEEDI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 VGLQAFQERLNSYKCITDTLQELVNQSKAAPQSPSVPKKPGPPVLSSDPNMLSNEEAGHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VGLQAFQERLNSYKCITDTLQELVNQSKAAPQSPSVPKKPGPPVLSSDPNMLSNEEAGHH
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 FEQMLKLSQRSKDELFSIALYNWLIQVDLADKLLQVASPFLEPHLVRMAKVDQNRVRYMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FEQMLKLSQRSKDELFSIALYNWLIQVDLADKLLQVASPFLEPHLVRMAKVDQNRVRYMD
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 LLWRYYEKNRSFSNAARVLSRLADMHSTEISLQQRLEYIARAILSAKSSTAISSIAADGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LLWRYYEKNRSFSNAARVLSRLADMHSTEISLQQRLEYIARAILSAKSSTAISSIAADGE
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 FLHELEEKMEVARIQLQIQETLQRQYSHHSSVQDAVSQLDSELMDITKLYGEFADPFKLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FLHELEEKMEVARIQLQIQETLQRQYSHHSSVQDAVSQLDSELMDITKLYGEFADPFKLA
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 ECKLAIIHCAGYSDPILVQTLWQDIIEKELSDSVTLSSSDRMHALSLKIVLLGKIYAGTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ECKLAIIHCAGYSDPILVQTLWQDIIEKELSDSVTLSSSDRMHALSLKIVLLGKIYAGTP
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 RFFPLDFIVQFLEQQVCTLNWDVGFVIQTMNEIGVPLPRLLEVYDQLFKSRDPFWNRMKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RFFPLDFIVQFLEQQVCTLNWDVGFVIQTMNEIGVPLPRLLEVYDQLFKSRDPFWNRMKK
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 PLHLLDCIHVLLIRYVENPSQVLNCERRRFTNLCLDAVCGYLVELQSMSSSVAVQAITGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PLHLLDCIHVLLIRYVENPSQVLNCERRRFTNLCLDAVCGYLVELQSMSSSVAVQAITGN
1270 1280 1290 1300 1310 1320
1330
pF1KA0 FKSLQAKLERLH
::::::::::::
NP_004 FKSLQAKLERLH
1330
>>NP_705618 (OMIM: 606694,615770) nuclear pore complex p (1391 aa)
initn: 8831 init1: 8831 opt: 8831 Z-score: 7027.3 bits: 1312.7 E(85289): 0
Smith-Waterman score: 8831; 100.0% identity (100.0% similar) in 1332 aa overlap (1-1332:60-1391)
10 20 30
pF1KA0 MSDMDYPLQGPGLLSVPNLPEISSIRRVPL
::::::::::::::::::::::::::::::
NP_705 IDRQLQEDRMYPDLSELLMVSAPNNPTVSGMSDMDYPLQGPGLLSVPNLPEISSIRRVPL
30 40 50 60 70 80
40 50 60 70 80 90
pF1KA0 PPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 PPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGL
90 100 110 120 130 140
100 110 120 130 140 150
pF1KA0 VKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLSGGMQLLPDPLYSLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 VKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLSGGMQLLPDPLYSLP
150 160 170 180 190 200
160 170 180 190 200 210
pF1KA0 TDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 TDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLL
210 220 230 240 250 260
220 230 240 250 260 270
pF1KA0 QFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQGMSRVASVSQNAIVSAAGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 QFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQGMSRVASVSQNAIVSAAGN
270 280 290 300 310 320
280 290 300 310 320 330
pF1KA0 IARTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCPFRQPLARPNTLTLVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 IARTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCPFRQPLARPNTLTLVH
330 340 350 360 370 380
340 350 360 370 380 390
pF1KA0 VRLPPGFSASSTVEKPSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 VRLPPGFSASSTVEKPSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQ
390 400 410 420 430 440
400 410 420 430 440 450
pF1KA0 MTAGVDGHSWALSAIDELKVDKIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 MTAGVDGHSWALSAIDELKVDKIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSL
450 460 470 480 490 500
460 470 480 490 500 510
pF1KA0 MFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 MFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWA
510 520 530 540 550 560
520 530 540 550 560 570
pF1KA0 TRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTPSHGIQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 TRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTPSHGIQP
570 580 590 600 610 620
580 590 600 610 620 630
pF1KA0 PAMSTPVCALGNPATQATNMSCVTGPEIVYSGKHNGICIYFSRIMGNIWDASLVVERIFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 PAMSTPVCALGNPATQATNMSCVTGPEIVYSGKHNGICIYFSRIMGNIWDASLVVERIFK
630 640 650 660 670 680
640 650 660 670 680 690
pF1KA0 SGNREITAIESSVPCQLLESVLQELKGLQEFLDRNSQFAGGPLGNPNTTAKVQQRLIGFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 SGNREITAIESSVPCQLLESVLQELKGLQEFLDRNSQFAGGPLGNPNTTAKVQQRLIGFM
690 700 710 720 730 740
700 710 720 730 740 750
pF1KA0 RPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 RPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAE
750 760 770 780 790 800
760 770 780 790 800 810
pF1KA0 LQKELQEQLKITTFKDLVIRDKELTGALIASLINCYIRDNAAVDGISLHLQDICPLLYST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 LQKELQEQLKITTFKDLVIRDKELTGALIASLINCYIRDNAAVDGISLHLQDICPLLYST
810 820 830 840 850 860
820 830 840 850 860 870
pF1KA0 DDAICSKANELLQRSRQVQNKTEKERMLRESLKEYQKISNQVDLSNVCAQYRQVRFYEGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 DDAICSKANELLQRSRQVQNKTEKERMLRESLKEYQKISNQVDLSNVCAQYRQVRFYEGV
870 880 890 900 910 920
880 890 900 910 920 930
pF1KA0 VELSLTAAEKKDPQGLGLHFYKHGEPEEDIVGLQAFQERLNSYKCITDTLQELVNQSKAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 VELSLTAAEKKDPQGLGLHFYKHGEPEEDIVGLQAFQERLNSYKCITDTLQELVNQSKAA
930 940 950 960 970 980
940 950 960 970 980 990
pF1KA0 PQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDELFSIALYNWLIQVDLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 PQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDELFSIALYNWLIQVDLA
990 1000 1010 1020 1030 1040
1000 1010 1020 1030 1040 1050
pF1KA0 DKLLQVASPFLEPHLVRMAKVDQNRVRYMDLLWRYYEKNRSFSNAARVLSRLADMHSTEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 DKLLQVASPFLEPHLVRMAKVDQNRVRYMDLLWRYYEKNRSFSNAARVLSRLADMHSTEI
1050 1060 1070 1080 1090 1100
1060 1070 1080 1090 1100 1110
pF1KA0 SLQQRLEYIARAILSAKSSTAISSIAADGEFLHELEEKMEVARIQLQIQETLQRQYSHHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 SLQQRLEYIARAILSAKSSTAISSIAADGEFLHELEEKMEVARIQLQIQETLQRQYSHHS
1110 1120 1130 1140 1150 1160
1120 1130 1140 1150 1160 1170
pF1KA0 SVQDAVSQLDSELMDITKLYGEFADPFKLAECKLAIIHCAGYSDPILVQTLWQDIIEKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 SVQDAVSQLDSELMDITKLYGEFADPFKLAECKLAIIHCAGYSDPILVQTLWQDIIEKEL
1170 1180 1190 1200 1210 1220
1180 1190 1200 1210 1220 1230
pF1KA0 SDSVTLSSSDRMHALSLKIVLLGKIYAGTPRFFPLDFIVQFLEQQVCTLNWDVGFVIQTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 SDSVTLSSSDRMHALSLKIVLLGKIYAGTPRFFPLDFIVQFLEQQVCTLNWDVGFVIQTM
1230 1240 1250 1260 1270 1280
1240 1250 1260 1270 1280 1290
pF1KA0 NEIGVPLPRLLEVYDQLFKSRDPFWNRMKKPLHLLDCIHVLLIRYVENPSQVLNCERRRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 NEIGVPLPRLLEVYDQLFKSRDPFWNRMKKPLHLLDCIHVLLIRYVENPSQVLNCERRRF
1290 1300 1310 1320 1330 1340
1300 1310 1320 1330
pF1KA0 TNLCLDAVCGYLVELQSMSSSVAVQAITGNFKSLQAKLERLH
::::::::::::::::::::::::::::::::::::::::::
NP_705 TNLCLDAVCGYLVELQSMSSSVAVQAITGNFKSLQAKLERLH
1350 1360 1370 1380 1390
>>XP_011512467 (OMIM: 606694,615770) PREDICTED: nuclear (892 aa)
initn: 5544 init1: 5469 opt: 5469 Z-score: 4356.7 bits: 817.9 E(85289): 0
Smith-Waterman score: 5469; 99.5% identity (100.0% similar) in 821 aa overlap (1-821:60-880)
10 20 30
pF1KA0 MSDMDYPLQGPGLLSVPNLPEISSIRRVPL
::::::::::::::::::::::::::::::
XP_011 IDRQLQEDRMYPDLSELLMVSAPNNPTVSGMSDMDYPLQGPGLLSVPNLPEISSIRRVPL
30 40 50 60 70 80
40 50 60 70 80 90
pF1KA0 PPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGL
90 100 110 120 130 140
100 110 120 130 140 150
pF1KA0 VKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLSGGMQLLPDPLYSLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLSGGMQLLPDPLYSLP
150 160 170 180 190 200
160 170 180 190 200 210
pF1KA0 TDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLL
210 220 230 240 250 260
220 230 240 250 260 270
pF1KA0 QFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQGMSRVASVSQNAIVSAAGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQGMSRVASVSQNAIVSAAGN
270 280 290 300 310 320
280 290 300 310 320 330
pF1KA0 IARTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCPFRQPLARPNTLTLVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IARTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCPFRQPLARPNTLTLVH
330 340 350 360 370 380
340 350 360 370 380 390
pF1KA0 VRLPPGFSASSTVEKPSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRLPPGFSASSTVEKPSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQ
390 400 410 420 430 440
400 410 420 430 440 450
pF1KA0 MTAGVDGHSWALSAIDELKVDKIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTAGVDGHSWALSAIDELKVDKIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSL
450 460 470 480 490 500
460 470 480 490 500 510
pF1KA0 MFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWA
510 520 530 540 550 560
520 530 540 550 560 570
pF1KA0 TRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTPSHGIQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTPSHGIQP
570 580 590 600 610 620
580 590 600 610 620 630
pF1KA0 PAMSTPVCALGNPATQATNMSCVTGPEIVYSGKHNGICIYFSRIMGNIWDASLVVERIFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PAMSTPVCALGNPATQATNMSCVTGPEIVYSGKHNGICIYFSRIMGNIWDASLVVERIFK
630 640 650 660 670 680
640 650 660 670 680 690
pF1KA0 SGNREITAIESSVPCQLLESVLQELKGLQEFLDRNSQFAGGPLGNPNTTAKVQQRLIGFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGNREITAIESSVPCQLLESVLQELKGLQEFLDRNSQFAGGPLGNPNTTAKVQQRLIGFM
690 700 710 720 730 740
700 710 720 730 740 750
pF1KA0 RPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAE
750 760 770 780 790 800
760 770 780 790 800 810
pF1KA0 LQKELQEQLKITTFKDLVIRDKELTGALIASLINCYIRDNAAVDGISLHLQDICPLLYST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQKELQEQLKITTFKDLVIRDKELTGALIASLINCYIRDNAAVDGISLHLQDICPLLYST
810 820 830 840 850 860
820 830 840 850 860 870
pF1KA0 DDAICSKANELLQRSRQVQNKTEKERMLRESLKEYQKISNQVDLSNVCAQYRQVRFYEGV
:::::::....
XP_011 DDAICSKVEKINKSVSHGLPAAQ
870 880 890
>>NP_001265241 (OMIM: 606694,615770) nuclear pore comple (1327 aa)
initn: 5055 init1: 5055 opt: 5061 Z-score: 4029.6 bits: 757.9 E(85289): 1e-217
Smith-Waterman score: 8282; 95.2% identity (95.2% similar) in 1332 aa overlap (1-1332:60-1327)
10 20 30
pF1KA0 MSDMDYPLQGPGLLSVPNLPEISSIRRVPL
::::::::::::::::::::::::::::::
NP_001 IDRQLQEDRMYPDLSELLMVSAPNNPTVSGMSDMDYPLQGPGLLSVPNLPEISSIRRVPL
30 40 50 60 70 80
40 50 60 70 80 90
pF1KA0 PPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGL
90 100 110 120 130 140
100 110 120 130 140 150
pF1KA0 VKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLSGGMQLLPDPLYSLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLSGGMQLLPDPLYSLP
150 160 170 180 190 200
160 170 180 190 200 210
pF1KA0 TDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLL
210 220 230 240 250 260
220 230 240 250 260 270
pF1KA0 QFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQGMSRVASVSQNAIVSAAGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQGMSRVASVSQNAIVSAAGN
270 280 290 300 310 320
280 290 300 310 320 330
pF1KA0 IARTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCPFRQPLARPNTLTLVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IARTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCPFRQPLARPNTLTLVH
330 340 350 360 370 380
340 350 360 370 380 390
pF1KA0 VRLPPGFSASSTVEKPSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRLPPGFSASSTVEKPSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQ
390 400 410 420 430 440
400 410 420 430 440 450
pF1KA0 MTAGVDGHSWALSAIDELKVDKIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTAGVDGHSWALSAIDELKVDKIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSL
450 460 470 480 490 500
460 470 480 490 500 510
pF1KA0 MFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWA
510 520 530 540 550 560
520 530 540 550 560 570
pF1KA0 TRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTPSHGIQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTPSHGIQP
570 580 590 600 610 620
580 590 600 610 620 630
pF1KA0 PAMSTPVCALGNPATQATNMSCVTGPEIVYSGKHNGICIYFSRIMGNIWDASLVVERIFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAMSTPVCALGNPATQATNMSCVTGPEIVYSGKHNGICIYFSRIMGNIWDASLVVERIFK
630 640 650 660 670 680
640 650 660 670 680 690
pF1KA0 SGNREITAIESSVPCQLLESVLQELKGLQEFLDRNSQFAGGPLGNPNTTAKVQQRLIGFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGNREITAIESSVPCQLLESVLQELKGLQEFLDRNSQFAGGPLGNPNTTAKVQQRLIGFM
690 700 710 720 730 740
700 710 720 730 740 750
pF1KA0 RPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAE
750 760 770 780 790 800
760 770 780 790 800 810
pF1KA0 LQKELQEQLKITTFKDLVIRDKELTGALIASLINCYIRDNAAVDGISLHLQDICPLLYST
:::
NP_001 LQK---------------------------------------------------------
810
820 830 840 850 860 870
pF1KA0 DDAICSKANELLQRSRQVQNKTEKERMLRESLKEYQKISNQVDLSNVCAQYRQVRFYEGV
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -------ANELLQRSRQVQNKTEKERMLRESLKEYQKISNQVDLSNVCAQYRQVRFYEGV
820 830 840 850 860
880 890 900 910 920 930
pF1KA0 VELSLTAAEKKDPQGLGLHFYKHGEPEEDIVGLQAFQERLNSYKCITDTLQELVNQSKAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VELSLTAAEKKDPQGLGLHFYKHGEPEEDIVGLQAFQERLNSYKCITDTLQELVNQSKAA
870 880 890 900 910 920
940 950 960 970 980 990
pF1KA0 PQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDELFSIALYNWLIQVDLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDELFSIALYNWLIQVDLA
930 940 950 960 970 980
1000 1010 1020 1030 1040 1050
pF1KA0 DKLLQVASPFLEPHLVRMAKVDQNRVRYMDLLWRYYEKNRSFSNAARVLSRLADMHSTEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKLLQVASPFLEPHLVRMAKVDQNRVRYMDLLWRYYEKNRSFSNAARVLSRLADMHSTEI
990 1000 1010 1020 1030 1040
1060 1070 1080 1090 1100 1110
pF1KA0 SLQQRLEYIARAILSAKSSTAISSIAADGEFLHELEEKMEVARIQLQIQETLQRQYSHHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLQQRLEYIARAILSAKSSTAISSIAADGEFLHELEEKMEVARIQLQIQETLQRQYSHHS
1050 1060 1070 1080 1090 1100
1120 1130 1140 1150 1160 1170
pF1KA0 SVQDAVSQLDSELMDITKLYGEFADPFKLAECKLAIIHCAGYSDPILVQTLWQDIIEKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVQDAVSQLDSELMDITKLYGEFADPFKLAECKLAIIHCAGYSDPILVQTLWQDIIEKEL
1110 1120 1130 1140 1150 1160
1180 1190 1200 1210 1220 1230
pF1KA0 SDSVTLSSSDRMHALSLKIVLLGKIYAGTPRFFPLDFIVQFLEQQVCTLNWDVGFVIQTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDSVTLSSSDRMHALSLKIVLLGKIYAGTPRFFPLDFIVQFLEQQVCTLNWDVGFVIQTM
1170 1180 1190 1200 1210 1220
1240 1250 1260 1270 1280 1290
pF1KA0 NEIGVPLPRLLEVYDQLFKSRDPFWNRMKKPLHLLDCIHVLLIRYVENPSQVLNCERRRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NEIGVPLPRLLEVYDQLFKSRDPFWNRMKKPLHLLDCIHVLLIRYVENPSQVLNCERRRF
1230 1240 1250 1260 1270 1280
1300 1310 1320 1330
pF1KA0 TNLCLDAVCGYLVELQSMSSSVAVQAITGNFKSLQAKLERLH
::::::::::::::::::::::::::::::::::::::::::
NP_001 TNLCLDAVCGYLVELQSMSSSVAVQAITGNFKSLQAKLERLH
1290 1300 1310 1320
1332 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 10:19:35 2016 done: Thu Nov 3 10:19:37 2016
Total Scan time: 17.760 Total Display time: 0.250
Function used was FASTA [36.3.4 Apr, 2011]