Result of FASTA (ccds) for
pF1KA0773
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0773, 360 aa
1>>>pF1KA0773 360 - 360 aa - 360 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4952+/-0.000833; mu= 7.4060+/- 0.050
mean_var=128.5632+/-25.926, 0's: 0 Z-trim(111.4): 11 B-trim: 0 in 0/50
Lambda= 0.113114
statistics sampled from 12361 (12366) to 12361 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.38), width: 16
Scan time: 2.850
The best scores are: opt bits E(32554)
CCDS47734.1 FAM131B gene_id:9715|Hs108|chr7 ( 360) 2440 409.0 3.2e-114
CCDS5882.1 FAM131B gene_id:9715|Hs108|chr7 ( 332) 2248 377.6 8.1e-105
CCDS3262.2 FAM131A gene_id:131408|Hs108|chr3 ( 366) 506 93.4 3.3e-19
CCDS54689.1 FAM131A gene_id:131408|Hs108|chr3 ( 281) 451 84.3 1.3e-16
CCDS41270.1 FAM131C gene_id:348487|Hs108|chr1 ( 280) 394 75.0 8.4e-14
>>CCDS47734.1 FAM131B gene_id:9715|Hs108|chr7 (360 aa)
initn: 2440 init1: 2440 opt: 2440 Z-score: 2164.1 bits: 409.0 E(32554): 3.2e-114
Smith-Waterman score: 2440; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)
10 20 30 40 50 60
pF1KA0 MGCIGSRTVGNEVIAVDWKGLKDVDQINMDSTSSLHGSSLHRPSTEQTRTDFSWDGINLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MGCIGSRTVGNEVIAVDWKGLKDVDQINMDSTSSLHGSSLHRPSTEQTRTDFSWDGINLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 MEDTTSILPKLKRNSNAYGIGALAKSSFSGISRSMKDHVTKPTAMGQGRVAHMIEWQGWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MEDTTSILPKLKRNSNAYGIGALAKSSFSGISRSMKDHVTKPTAMGQGRVAHMIEWQGWG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 KTPAVQPQHSHESVRRDTDAYSDLSDGEKEARFLAGVMEQFAISEATLMAWSSMDGEDMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KTPAVQPQHSHESVRRDTDAYSDLSDGEKEARFLAGVMEQFAISEATLMAWSSMDGEDMS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 VNSTQEPLGCNYSDNYQELMDSQDALAQAPMDGWPHSYVSQGMYCLGSSDAWEASDQSLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VNSTQEPLGCNYSDNYQELMDSQDALAQAPMDGWPHSYVSQGMYCLGSSDAWEASDQSLI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 ASPATGSYLGPAFDDSQPSLHEMGPSQPASGYSALEPPPLLGGDTDWAPGVGAVDLARGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ASPATGSYLGPAFDDSQPSLHEMGPSQPASGYSALEPPPLLGGDTDWAPGVGAVDLARGP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 AEEEKRPLAPEEEEDAGCRDLESLSPREDPEMSTALSRKVSDVTSSGVQSFDEEEGEANN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AEEEKRPLAPEEEEDAGCRDLESLSPREDPEMSTALSRKVSDVTSSGVQSFDEEEGEANN
310 320 330 340 350 360
>>CCDS5882.1 FAM131B gene_id:9715|Hs108|chr7 (332 aa)
initn: 2248 init1: 2248 opt: 2248 Z-score: 1995.3 bits: 377.6 E(32554): 8.1e-105
Smith-Waterman score: 2248; 100.0% identity (100.0% similar) in 332 aa overlap (29-360:1-332)
10 20 30 40 50 60
pF1KA0 MGCIGSRTVGNEVIAVDWKGLKDVDQINMDSTSSLHGSSLHRPSTEQTRTDFSWDGINLS
::::::::::::::::::::::::::::::::
CCDS58 MDSTSSLHGSSLHRPSTEQTRTDFSWDGINLS
10 20 30
70 80 90 100 110 120
pF1KA0 MEDTTSILPKLKRNSNAYGIGALAKSSFSGISRSMKDHVTKPTAMGQGRVAHMIEWQGWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MEDTTSILPKLKRNSNAYGIGALAKSSFSGISRSMKDHVTKPTAMGQGRVAHMIEWQGWG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KA0 KTPAVQPQHSHESVRRDTDAYSDLSDGEKEARFLAGVMEQFAISEATLMAWSSMDGEDMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KTPAVQPQHSHESVRRDTDAYSDLSDGEKEARFLAGVMEQFAISEATLMAWSSMDGEDMS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KA0 VNSTQEPLGCNYSDNYQELMDSQDALAQAPMDGWPHSYVSQGMYCLGSSDAWEASDQSLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VNSTQEPLGCNYSDNYQELMDSQDALAQAPMDGWPHSYVSQGMYCLGSSDAWEASDQSLI
160 170 180 190 200 210
250 260 270 280 290 300
pF1KA0 ASPATGSYLGPAFDDSQPSLHEMGPSQPASGYSALEPPPLLGGDTDWAPGVGAVDLARGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ASPATGSYLGPAFDDSQPSLHEMGPSQPASGYSALEPPPLLGGDTDWAPGVGAVDLARGP
220 230 240 250 260 270
310 320 330 340 350 360
pF1KA0 AEEEKRPLAPEEEEDAGCRDLESLSPREDPEMSTALSRKVSDVTSSGVQSFDEEEGEANN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 AEEEKRPLAPEEEEDAGCRDLESLSPREDPEMSTALSRKVSDVTSSGVQSFDEEEGEANN
280 290 300 310 320 330
>>CCDS3262.2 FAM131A gene_id:131408|Hs108|chr3 (366 aa)
initn: 539 init1: 255 opt: 506 Z-score: 458.3 bits: 93.4 E(32554): 3.3e-19
Smith-Waterman score: 583; 38.3% identity (61.7% similar) in 368 aa overlap (3-357:24-362)
10 20 30
pF1KA0 MGCIGSRTVGNE-VIAVDWKGL-KDVDQINMDSTSSLHG
: :: :... . ::.: : . .. .. :. .:.:
CCDS32 MPMISVLGKMFLWQREGPGGRWTCQTSRRVSSDPAWAVEWIELPRGLSLSSLGSARTLRG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KA0 -SSLHRPSTEQTRTDFSWDGINLSMEDTTSILPKLKRNSNAYGIGALAKSSFSGISRSMK
: :::. .: : : .... ::...::: .: . :.:::.::. :::. .:
CCDS32 WSRSSRPSS----VD-SQDLPEVNVGDTVAMLPKSRRALTIQEIAALARSSLHGISQVVK
70 80 90 100 110
100 110 120 130 140 150
pF1KA0 DHVTKPTAMGQGRVAHMIEWQGWGKTPAVQPQHSHESVRRDTDAYSDLSDGEKEARFLAG
:::::::::.::::::.:::.::.: :. : ... ..:::::.::.:::: ::
CCDS32 DHVTKPTAMAQGRVAHLIEWKGWSK-----PSDSPAALESAFSSYSDLSEGEQEARFAAG
120 130 140 150 160 170
160 170 180 190 200 210
pF1KA0 VMEQFAISEATLMAWSSMDGEDMSVNSTQEPLGCNYSDNYQELMDSQDALAQAPMDGWP-
: :::::.:: : ::::.:::: . .: .: ... ... : .: :. .: .
CCDS32 VAEQFAIAEAKLRAWSSVDGEDSTDDSYDE----DFAGGMDTDMAGQLPLGPHLQDLFTG
180 190 200 210 220
220 230 240 250 260
pF1KA0 HSY---VSQGMYCLGSSDAWEASDQSLIASPAT--GSYLG-PAFDDSQPSLHEMGPSQ-P
: . : :: :. . .: ..: .: . . :: :: :: :. .. :
CCDS32 HRFSRPVRQGSVEPESDCSQTVSPDTLCSSLCSLEDGLLGSPARLASQLLGDELLLAKLP
230 240 250 260 270 280
270 280 290 300 310 320
pF1KA0 ASGYSALEP-PPLLGGDTDWAPGVGAVDLARGPAEEEKRPLAPEEEEDAGCRDLESLSPR
: ::.. :: . :. : .: : :.: ::: : :.: . : :
CCDS32 PSRESAFRSLGPLEAQDS----------LYNSPLTESC--LSPAEEEPAPCKDCQPLCP-
290 300 310 320 330
330 340 350 360
pF1KA0 EDPEMST-ALSRKVSDVTSSGVQSFDEEEGEANN
: .. .:..::..:::: :.::.:.:
CCDS32 --PLTGSWERQRQASDLASSGVVSLDEDEAEPEEQ
340 350 360
>>CCDS54689.1 FAM131A gene_id:131408|Hs108|chr3 (281 aa)
initn: 551 init1: 241 opt: 451 Z-score: 411.5 bits: 84.3 E(32554): 1.3e-16
Smith-Waterman score: 528; 40.2% identity (61.8% similar) in 301 aa overlap (67-357:1-277)
40 50 60 70 80 90
pF1KA0 GSSLHRPSTEQTRTDFSWDGINLSMEDTTSILPKLKRNSNAYGIGALAKSSFSGISRSMK
.::: .: . :.:::.::. :::. .:
CCDS54 MLPKSRRALTIQEIAALARSSLHGISQVVK
10 20 30
100 110 120 130 140 150
pF1KA0 DHVTKPTAMGQGRVAHMIEWQGWGKTPAVQPQHSHESVRRDTDAYSDLSDGEKEARFLAG
:::::::::.::::::.:::.::.: :. : ... ..:::::.::.:::: ::
CCDS54 DHVTKPTAMAQGRVAHLIEWKGWSK-----PSDSPAALESAFSSYSDLSEGEQEARFAAG
40 50 60 70 80
160 170 180 190 200 210
pF1KA0 VMEQFAISEATLMAWSSMDGEDMSVNSTQEPLGCNYSDNYQELMDSQDALAQAPMDGWP-
: :::::.:: : ::::.:::: . .: .: ... ... : .: :. .: .
CCDS54 VAEQFAIAEAKLRAWSSVDGEDSTDDSYDE----DFAGGMDTDMAGQLPLGPHLQDLFTG
90 100 110 120 130 140
220 230 240 250 260
pF1KA0 HSY---VSQGMYCLGSSDAWEASDQSLIASPAT--GSYLG-PAFDDSQPSLHEMGPSQ-P
: . : :: :. . .: ..: .: . . :: :: :: :. .. :
CCDS54 HRFSRPVRQGSVEPESDCSQTVSPDTLCSSLCSLEDGLLGSPARLASQLLGDELLLAKLP
150 160 170 180 190 200
270 280 290 300 310 320
pF1KA0 ASGYSALEP-PPLLGGDTDWAPGVGAVDLARGPAEEEKRPLAPEEEEDAGCRDLESLSPR
: ::.. :: . :. : .: : :.: ::: : :.: . : :
CCDS54 PSRESAFRSLGPLEAQDS----------LYNSPLTESC--LSPAEEEPAPCKDCQPLCP-
210 220 230 240
330 340 350 360
pF1KA0 EDPEMST-ALSRKVSDVTSSGVQSFDEEEGEANN
: .. .:..::..:::: :.::.:.:
CCDS54 --PLTGSWERQRQASDLASSGVVSLDEDEAEPEEQ
250 260 270 280
>>CCDS41270.1 FAM131C gene_id:348487|Hs108|chr1 (280 aa)
initn: 417 init1: 255 opt: 394 Z-score: 361.3 bits: 75.0 E(32554): 8.4e-14
Smith-Waterman score: 399; 33.8% identity (57.9% similar) in 240 aa overlap (51-287:51-272)
30 40 50 60 70 80
pF1KA0 LKDVDQINMDSTSSLHGSSLHRPSTEQTRTDFSWDGINLSMEDTTSILPKLKRNSNAYGI
:: :: . .. :.. : . . :..
CCDS41 QGADPLNPDLPSGRTPTVAPDCVIGKDKQMDFCWDPWQRCFQTTNGYLSDSRSRPGNYNV
30 40 50 60 70 80
90 100 110 120 130 140
pF1KA0 GALAKSSFSGISRSMKDHVTKPTAMGQGRVAHMIEWQGWGKTPAVQPQHSHESVRRDTDA
.::: ::. :. .:.:::.::::::..:::::.:::.::. :: . : . .
CCDS41 AALATSSLVGVVQSIKDHITKPTAMARGRVAHLIEWKGWSAQPA-----GWELSPAEDEH
90 100 110 120 130
150 160 170 180 190 200
pF1KA0 YSDLSDGEKEARFLAGVMEQFAISEATLMAWSSMDGEDMSVNSTQEPLGCNYSDNYQELM
: : : .:::: ::: :::::.:::: ::::.: :.. ... : : .. . ..
CCDS41 YCCLPDELREARFAAGVAEQFAITEATLSAWSSLDEEELHPENS--PQGIVQLQDLESIY
140 150 160 170 180 190
210 220 230 240 250 260
pF1KA0 DSQDALAQAPMDGWPHSYVSQGMYCLGSSDAWEASDQSLIASPATGSYLGPAFDDSQPSL
::.: ..: . .... ..: . : : :.:.. : . :
CCDS41 -LQDSLPSGPSQ-------DDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRR
200 210 220 230 240
270 280 290 300 310
pF1KA0 HEMGPSQPASGYSALEPP---PLLGGDTDWAPGVGAVDLARGPAEEEKRPLAPEEEEDAG
. : . : .: .:: : . . . :
CCDS41 RLPGAQGPEGG---THPPGSLPSMDSGSLWEEDEVFYN
250 260 270 280
360 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:42:33 2016 done: Wed Nov 2 19:42:33 2016
Total Scan time: 2.850 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]