FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0765, 932 aa
  1>>>pF1KA0765 932 - 932 aa - 932 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.6420+/-0.00136; mu= -18.2224+/- 0.083
 mean_var=706.5631+/-144.305, 0's: 0 Z-trim(115.5): 105  B-trim: 48 in 1/55
 Lambda= 0.048250
 statistics sampled from 15924 (16014) to 15924 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.492), width:  16
 Scan time:  5.040

The best scores are:                                      opt bits E(32554)
CCDS13261.1 RBM12 gene_id:10137|Hs108|chr20        ( 932) 6450 464.9 3.2e-130


>>CCDS13261.1 RBM12 gene_id:10137|Hs108|chr20             (932 aa)
 initn: 6450 init1: 6450 opt: 6450  Z-score: 2451.2  bits: 464.9 E(32554): 3.2e-130
Smith-Waterman score: 6450; 100.0% identity (100.0% similar) in 932 aa overlap (1-932:1-932)

               10        20        30        40        50        60
pF1KA0 MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGELGEAFIVFATDEDARLGMMRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGELGEAFIVFATDEDARLGMMRT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 GGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 TTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPNMGASFGSPTFSSTVPSTAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPNMGASFGSPTFSSTVPSTAS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 PMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 MSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSSVKPLPIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSSVKPLPIN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 KRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 RSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 EADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 SERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 GLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 FNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLS
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 GPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHI
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 GGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEA
              850       860       870       880       890       900

              910       920       930  
pF1KA0 MVAFESRDEATAAVIDLNDRPIGSRKVKLVLG
       ::::::::::::::::::::::::::::::::
CCDS13 MVAFESRDEATAAVIDLNDRPIGSRKVKLVLG
              910       920       930  




932 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 19:41:25 2016 done: Wed Nov  2 19:41:26 2016
 Total Scan time:  5.040 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]