FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0749, 657 aa
  1>>>pF1KA0749 657 - 657 aa - 657 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3939+/-0.000371; mu= -1.4697+/- 0.023
 mean_var=348.7742+/-72.322, 0's: 0 Z-trim(124.3): 59  B-trim: 930 in 2/59
 Lambda= 0.068676
 statistics sampled from 45522 (45611) to 45522 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.535), width:  16
 Scan time: 14.180

The best scores are:                                      opt bits E(85289)
XP_011536357 (OMIM: 610588) PREDICTED: dendrin iso ( 657) 4584 468.1 4.5e-131
NP_055901 (OMIM: 610588) dendrin [Homo sapiens]    ( 711) 4584 468.1 4.8e-131


>>XP_011536357 (OMIM: 610588) PREDICTED: dendrin isoform  (657 aa)
 initn: 4584 init1: 4584 opt: 4584  Z-score: 2474.1  bits: 468.1 E(85289): 4.5e-131
Smith-Waterman score: 4584; 100.0% identity (100.0% similar) in 657 aa overlap (1-657:1-657)

               10        20        30        40        50        60
pF1KA0 MDFQASHWARGFQNRTCGPRPGSPQPPPRRPWASRVLQEATNWRAGPLAEVRAREQEKRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDFQASHWARGFQNRTCGPRPGSPQPPPRRPWASRVLQEATNWRAGPLAEVRAREQEKRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 AASQEREAKETERKRRKAGGARRSPPGRPRPEPRNAPRVAQLAGLPAPLRPERLAPVGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AASQEREAKETERKRRKAGGARRSPPGRPRPEPRNAPRVAQLAGLPAPLRPERLAPVGRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 PRPSAQPQSDPGSAWAGPWGGRRPGPPSYEAHLLLRGSAGTAPRRRWDRPPPYVAPPSYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PRPSAQPQSDPGSAWAGPWGGRRPGPPSYEAHLLLRGSAGTAPRRRWDRPPPYVAPPSYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 GPHRTLGTKRGPGNSQVPTSSAPAATPARTDGGRTKKRLDPRIYRDVLGAWGLRQGQGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPHRTLGTKRGPGNSQVPTSSAPAATPARTDGGRTKKRLDPRIYRDVLGAWGLRQGQGLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 GGSPGCGAARARPEPGKGVVEKSLGLAAADLNSGSDSHPQAKATGSAGTEIAPAGSATAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGSPGCGAARARPEPGKGVVEKSLGLAAADLNSGSDSHPQAKATGSAGTEIAPAGSATAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 PCAPHPAPRSRHHLKGSREGKEGEQIWFPKCWIPSPKKQPPRHSQTLPRPWAPGGTGWRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PCAPHPAPRSRHHLKGSREGKEGEQIWFPKCWIPSPKKQPPRHSQTLPRPWAPGGTGWRE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 SLGLGEGAGPETLEGWKATRRAHTLPRSSQGLSRGEGVFVIDATCVVIRSQYVPTPRTQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLGLGEGAGPETLEGWKATRRAHTLPRSSQGLSRGEGVFVIDATCVVIRSQYVPTPRTQQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 VQLLPSGVTRVVGDSPSQSKPGKEEGEGATVFPSPCQKRLSSSRLLHQPGGGRGGEAEGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VQLLPSGVTRVVGDSPSQSKPGKEEGEGATVFPSPCQKRLSSSRLLHQPGGGRGGEAEGG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 RPGDSTLEERTFRILGLPAPEVNLRDAPTQPGSPEHQALGPAASGAQGRAEGSEVAVVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RPGDSTLEERTFRILGLPAPEVNLRDAPTQPGSPEHQALGPAASGAQGRAEGSEVAVVQR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 RAGRGWARTPGPYAGALREAVSRIRRHTAPDSDTDEAEELSVHSGSSDGSDTEAPGASWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RAGRGWARTPGPYAGALREAVSRIRRHTAPDSDTDEAEELSVHSGSSDGSDTEAPGASWR
              550       560       570       580       590       600

              610       620       630       640       650       
pF1KA0 NERTLPEVGNSSPEEDGKTAELSDSVGEILDVISQTEEVLFGVRDIRGTQQGNRKRQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NERTLPEVGNSSPEEDGKTAELSDSVGEILDVISQTEEVLFGVRDIRGTQQGNRKRQ
              610       620       630       640       650       

>>NP_055901 (OMIM: 610588) dendrin [Homo sapiens]         (711 aa)
 initn: 4584 init1: 4584 opt: 4584  Z-score: 2473.7  bits: 468.1 E(85289): 4.8e-131
Smith-Waterman score: 4584; 100.0% identity (100.0% similar) in 657 aa overlap (1-657:55-711)

                                             10        20        30
pF1KA0                               MDFQASHWARGFQNRTCGPRPGSPQPPPRR
                                     ::::::::::::::::::::::::::::::
NP_055 CLWVQKSKLLVIEVKTISCHYSRRAPSRQPMDFQASHWARGFQNRTCGPRPGSPQPPPRR
           30        40        50        60        70        80    

               40        50        60        70        80        90
pF1KA0 PWASRVLQEATNWRAGPLAEVRAREQEKRKAASQEREAKETERKRRKAGGARRSPPGRPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PWASRVLQEATNWRAGPLAEVRAREQEKRKAASQEREAKETERKRRKAGGARRSPPGRPR
           90       100       110       120       130       140    

              100       110       120       130       140       150
pF1KA0 PEPRNAPRVAQLAGLPAPLRPERLAPVGRAPRPSAQPQSDPGSAWAGPWGGRRPGPPSYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PEPRNAPRVAQLAGLPAPLRPERLAPVGRAPRPSAQPQSDPGSAWAGPWGGRRPGPPSYE
          150       160       170       180       190       200    

              160       170       180       190       200       210
pF1KA0 AHLLLRGSAGTAPRRRWDRPPPYVAPPSYEGPHRTLGTKRGPGNSQVPTSSAPAATPART
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AHLLLRGSAGTAPRRRWDRPPPYVAPPSYEGPHRTLGTKRGPGNSQVPTSSAPAATPART
          210       220       230       240       250       260    

              220       230       240       250       260       270
pF1KA0 DGGRTKKRLDPRIYRDVLGAWGLRQGQGLLGGSPGCGAARARPEPGKGVVEKSLGLAAAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DGGRTKKRLDPRIYRDVLGAWGLRQGQGLLGGSPGCGAARARPEPGKGVVEKSLGLAAAD
          270       280       290       300       310       320    

              280       290       300       310       320       330
pF1KA0 LNSGSDSHPQAKATGSAGTEIAPAGSATAAPCAPHPAPRSRHHLKGSREGKEGEQIWFPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LNSGSDSHPQAKATGSAGTEIAPAGSATAAPCAPHPAPRSRHHLKGSREGKEGEQIWFPK
          330       340       350       360       370       380    

              340       350       360       370       380       390
pF1KA0 CWIPSPKKQPPRHSQTLPRPWAPGGTGWRESLGLGEGAGPETLEGWKATRRAHTLPRSSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CWIPSPKKQPPRHSQTLPRPWAPGGTGWRESLGLGEGAGPETLEGWKATRRAHTLPRSSQ
          390       400       410       420       430       440    

              400       410       420       430       440       450
pF1KA0 GLSRGEGVFVIDATCVVIRSQYVPTPRTQQVQLLPSGVTRVVGDSPSQSKPGKEEGEGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GLSRGEGVFVIDATCVVIRSQYVPTPRTQQVQLLPSGVTRVVGDSPSQSKPGKEEGEGAT
          450       460       470       480       490       500    

              460       470       480       490       500       510
pF1KA0 VFPSPCQKRLSSSRLLHQPGGGRGGEAEGGRPGDSTLEERTFRILGLPAPEVNLRDAPTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VFPSPCQKRLSSSRLLHQPGGGRGGEAEGGRPGDSTLEERTFRILGLPAPEVNLRDAPTQ
          510       520       530       540       550       560    

              520       530       540       550       560       570
pF1KA0 PGSPEHQALGPAASGAQGRAEGSEVAVVQRRAGRGWARTPGPYAGALREAVSRIRRHTAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PGSPEHQALGPAASGAQGRAEGSEVAVVQRRAGRGWARTPGPYAGALREAVSRIRRHTAP
          570       580       590       600       610       620    

              580       590       600       610       620       630
pF1KA0 DSDTDEAEELSVHSGSSDGSDTEAPGASWRNERTLPEVGNSSPEEDGKTAELSDSVGEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DSDTDEAEELSVHSGSSDGSDTEAPGASWRNERTLPEVGNSSPEEDGKTAELSDSVGEIL
          630       640       650       660       670       680    

              640       650       
pF1KA0 DVISQTEEVLFGVRDIRGTQQGNRKRQ
       :::::::::::::::::::::::::::
NP_055 DVISQTEEVLFGVRDIRGTQQGNRKRQ
          690       700       710 




657 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:45:35 2016 done: Sat Nov  5 06:45:37 2016
 Total Scan time: 14.180 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]