FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0749, 657 aa
  1>>>pF1KA0749 657 - 657 aa - 657 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0810+/-0.000888; mu= 0.2904+/- 0.053
 mean_var=314.8893+/-63.808, 0's: 0 Z-trim(116.7): 30  B-trim: 173 in 1/53
 Lambda= 0.072276
 statistics sampled from 17340 (17364) to 17340 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.533), width:  16
 Scan time:  3.630

The best scores are:                                      opt bits E(32554)
CCDS31791.2 DDN gene_id:23109|Hs108|chr12          ( 711) 4584 491.6 1.5e-138


>>CCDS31791.2 DDN gene_id:23109|Hs108|chr12               (711 aa)
 initn: 4584 init1: 4584 opt: 4584  Z-score: 2600.7  bits: 491.6 E(32554): 1.5e-138
Smith-Waterman score: 4584; 100.0% identity (100.0% similar) in 657 aa overlap (1-657:55-711)

                                             10        20        30
pF1KA0                               MDFQASHWARGFQNRTCGPRPGSPQPPPRR
                                     ::::::::::::::::::::::::::::::
CCDS31 CLWVQKSKLLVIEVKTISCHYSRRAPSRQPMDFQASHWARGFQNRTCGPRPGSPQPPPRR
           30        40        50        60        70        80    

               40        50        60        70        80        90
pF1KA0 PWASRVLQEATNWRAGPLAEVRAREQEKRKAASQEREAKETERKRRKAGGARRSPPGRPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PWASRVLQEATNWRAGPLAEVRAREQEKRKAASQEREAKETERKRRKAGGARRSPPGRPR
           90       100       110       120       130       140    

              100       110       120       130       140       150
pF1KA0 PEPRNAPRVAQLAGLPAPLRPERLAPVGRAPRPSAQPQSDPGSAWAGPWGGRRPGPPSYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PEPRNAPRVAQLAGLPAPLRPERLAPVGRAPRPSAQPQSDPGSAWAGPWGGRRPGPPSYE
          150       160       170       180       190       200    

              160       170       180       190       200       210
pF1KA0 AHLLLRGSAGTAPRRRWDRPPPYVAPPSYEGPHRTLGTKRGPGNSQVPTSSAPAATPART
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AHLLLRGSAGTAPRRRWDRPPPYVAPPSYEGPHRTLGTKRGPGNSQVPTSSAPAATPART
          210       220       230       240       250       260    

              220       230       240       250       260       270
pF1KA0 DGGRTKKRLDPRIYRDVLGAWGLRQGQGLLGGSPGCGAARARPEPGKGVVEKSLGLAAAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DGGRTKKRLDPRIYRDVLGAWGLRQGQGLLGGSPGCGAARARPEPGKGVVEKSLGLAAAD
          270       280       290       300       310       320    

              280       290       300       310       320       330
pF1KA0 LNSGSDSHPQAKATGSAGTEIAPAGSATAAPCAPHPAPRSRHHLKGSREGKEGEQIWFPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LNSGSDSHPQAKATGSAGTEIAPAGSATAAPCAPHPAPRSRHHLKGSREGKEGEQIWFPK
          330       340       350       360       370       380    

              340       350       360       370       380       390
pF1KA0 CWIPSPKKQPPRHSQTLPRPWAPGGTGWRESLGLGEGAGPETLEGWKATRRAHTLPRSSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CWIPSPKKQPPRHSQTLPRPWAPGGTGWRESLGLGEGAGPETLEGWKATRRAHTLPRSSQ
          390       400       410       420       430       440    

              400       410       420       430       440       450
pF1KA0 GLSRGEGVFVIDATCVVIRSQYVPTPRTQQVQLLPSGVTRVVGDSPSQSKPGKEEGEGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GLSRGEGVFVIDATCVVIRSQYVPTPRTQQVQLLPSGVTRVVGDSPSQSKPGKEEGEGAT
          450       460       470       480       490       500    

              460       470       480       490       500       510
pF1KA0 VFPSPCQKRLSSSRLLHQPGGGRGGEAEGGRPGDSTLEERTFRILGLPAPEVNLRDAPTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VFPSPCQKRLSSSRLLHQPGGGRGGEAEGGRPGDSTLEERTFRILGLPAPEVNLRDAPTQ
          510       520       530       540       550       560    

              520       530       540       550       560       570
pF1KA0 PGSPEHQALGPAASGAQGRAEGSEVAVVQRRAGRGWARTPGPYAGALREAVSRIRRHTAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PGSPEHQALGPAASGAQGRAEGSEVAVVQRRAGRGWARTPGPYAGALREAVSRIRRHTAP
          570       580       590       600       610       620    

              580       590       600       610       620       630
pF1KA0 DSDTDEAEELSVHSGSSDGSDTEAPGASWRNERTLPEVGNSSPEEDGKTAELSDSVGEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DSDTDEAEELSVHSGSSDGSDTEAPGASWRNERTLPEVGNSSPEEDGKTAELSDSVGEIL
          630       640       650       660       670       680    

              640       650       
pF1KA0 DVISQTEEVLFGVRDIRGTQQGNRKRQ
       :::::::::::::::::::::::::::
CCDS31 DVISQTEEVLFGVRDIRGTQQGNRKRQ
          690       700       710 




657 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:45:34 2016 done: Sat Nov  5 06:45:35 2016
 Total Scan time:  3.630 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]