Result of FASTA (ccds) for
pF1KA0714
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0714, 1766 aa
1>>>pF1KA0714 1766 - 1766 aa - 1766 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1755+/-0.00131; mu= 19.6226+/- 0.079
mean_var=81.0475+/-16.558, 0's: 0 Z-trim(100.8): 69 B-trim: 2 in 1/50
Lambda= 0.142464
statistics sampled from 6229 (6261) to 6229 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.535), E-opt: 0.2 (0.192), width: 16
Scan time: 4.620
The best scores are: opt bits E(32554)
CCDS33527.2 LTN1 gene_id:26046|Hs108|chr21 (1812) 11602 2395.8 0
>>CCDS33527.2 LTN1 gene_id:26046|Hs108|chr21 (1812 aa)
initn: 11602 init1: 11602 opt: 11602 Z-score: 12876.9 bits: 2395.8 E(32554): 0
Smith-Waterman score: 11602; 99.9% identity (99.9% similar) in 1766 aa overlap (1-1766:47-1812)
10 20 30
pF1KA0 MGGKNKQRTKGNLRPSNSGRAAELLAKEQG
::::::::::::::::::::::::::::::
CCDS33 VSSSAARSRKLCPGRVNRGLSAQSTAATATMGGKNKQRTKGNLRPSNSGRAAELLAKEQG
20 30 40 50 60 70
40 50 60 70 80 90
pF1KA0 TVPGFIGFGTSQSDLGYVPAIQGAEEIDSLVDSDFRMVLRKLSKKDVTTKLKAMQEFGTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TVPGFIGFGTSQSDLGYVPAIQGAEEIDSLVDSDFRMVLRKLSKKDVTTKLKAMQEFGTM
80 90 100 110 120 130
100 110 120 130 140 150
pF1KA0 CTERDTETVKGVLPYWPRIFCKISLDHDRRVREATQQAFEKLILKVKKQLAPYLKSLMGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CTERDTETVKGVLPYWPRIFCKISLDHDRRVREATQQAFEKLILKVKKQLAPYLKSLMGY
140 150 160 170 180 190
160 170 180 190 200 210
pF1KA0 WLMAQCDTYTPAAFAAKDAFEAAFPPSKQPEAIAFCKDEITSVLQDHLIKETPDTLSDPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WLMAQCDTYTPAAFAAKDAFEAAFPPSKQPEAIAFCKDEITSVLQDHLIKETPDTLSDPQ
200 210 220 230 240 250
220 230 240 250 260 270
pF1KA0 TVPEEEREAKFYRVVTCSLLALKRLLCLLPDNELDSLEEKFKSLLSQNKFWKYGKHSVPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TVPEEEREAKFYRVVTCSLLALKRLLCLLPDNELDSLEEKFKSLLSQNKFWKYGKHSVPQ
260 270 280 290 300 310
280 290 300 310 320 330
pF1KA0 IRSAYFELVSALCQRIPQLMKEEASKVSPSVLLSIDDSDPIVCPALWEAVLYTLTTIEDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IRSAYFELVSALCQRIPQLMKEEASKVSPSVLLSIDDSDPIVCPALWEAVLYTLTTIEDC
320 330 340 350 360 370
340 350 360 370 380 390
pF1KA0 WLHVNAKKSVFPKLSTVIREGGRGLATVIYPYLLPFISKLPQSITNPKLDFFKNFLTSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WLHVNAKKSVFPKLSTVIREGGRGLATVIYPYLLPFISKLPQSITNPKLDFFKNFLTSLV
380 390 400 410 420 430
400 410 420 430 440 450
pF1KA0 AGLSTERTKTSSSESSAVISAFFECLRFIMQQNLGEEEIEQMLVNDQLIPFIDAVLKDPG
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AGLSTERTKTSSLESSAVISAFFECLRFIMQQNLGEEEIEQMLVNDQLIPFIDAVLKDPG
440 450 460 470 480 490
460 470 480 490 500 510
pF1KA0 LQHGQLFNHLAETLSSWEAKADTEKDEKTAHNLENVLIHFWERLSEICVAKISEPEADVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LQHGQLFNHLAETLSSWEAKADTEKDEKTAHNLENVLIHFWERLSEICVAKISEPEADVE
500 510 520 530 540 550
520 530 540 550 560 570
pF1KA0 SVLGVSNLLQVLQKPKSSLKSSKKKNGKVRFADEILESNKENEKCVSSEGEKIEGWELTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SVLGVSNLLQVLQKPKSSLKSSKKKNGKVRFADEILESNKENEKCVSSEGEKIEGWELTT
560 570 580 590 600 610
580 590 600 610 620 630
pF1KA0 EPSLTHNSSGLLSPLRKKPLEDLVCKLADISINYVNERKSEQHLRFLSTLLDSFSSSRVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EPSLTHNSSGLLSPLRKKPLEDLVCKLADISINYVNERKSEQHLRFLSTLLDSFSSSRVF
620 630 640 650 660 670
640 650 660 670 680 690
pF1KA0 KMLLGDEKQSIVQAKPLEIAKLVQKNPAVQFLYQKLIGWLNEDQRKDFGFLVDILYSALR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KMLLGDEKQSIVQAKPLEIAKLVQKNPAVQFLYQKLIGWLNEDQRKDFGFLVDILYSALR
680 690 700 710 720 730
700 710 720 730 740 750
pF1KA0 CCDNDMERKKVLDDLTKVDLKWNSLLKIIEKACPSSDKHALVTPWLKGDILGEKLVNLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CCDNDMERKKVLDDLTKVDLKWNSLLKIIEKACPSSDKHALVTPWLKGDILGEKLVNLAD
740 750 760 770 780 790
760 770 780 790 800 810
pF1KA0 CLCNEDLESRVSSESHFSERWTLLSLVLSQHVKNDYLIGDVYVERIIVRLHETLFKTKKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CLCNEDLESRVSSESHFSERWTLLSLVLSQHVKNDYLIGDVYVERIIVRLHETLFKTKKL
800 810 820 830 840 850
820 830 840 850 860 870
pF1KA0 SEAESSDSSVSFICDVAYNYFSSAKGCLLMPSSEDLLLTLFQLCAQSKEKTHLPDFLICK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SEAESSDSSVSFICDVAYNYFSSAKGCLLMPSSEDLLLTLFQLCAQSKEKTHLPDFLICK
860 870 880 890 900 910
880 890 900 910 920 930
pF1KA0 LKNTWLSGVNLLVHQTDSSYKESTFLHLSALWLKNQVQASSLDINSLQVLLSAVDDLLNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LKNTWLSGVNLLVHQTDSSYKESTFLHLSALWLKNQVQASSLDINSLQVLLSAVDDLLNT
920 930 940 950 960 970
940 950 960 970 980 990
pF1KA0 LLESEDSYLMGVYIGSVMPNDSEWEKMRQSLPMQWLHRPLLEGRLSLNYECFKTDFKEQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LLESEDSYLMGVYIGSVMPNDSEWEKMRQSLPMQWLHRPLLEGRLSLNYECFKTDFKEQD
980 990 1000 1010 1020 1030
1000 1010 1020 1030 1040 1050
pF1KA0 IKTLPSHLCTSALLSKMVLIALRKETVLENNELEKIIAELLYSLQWCEELDNPPIFLIGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IKTLPSHLCTSALLSKMVLIALRKETVLENNELEKIIAELLYSLQWCEELDNPPIFLIGF
1040 1050 1060 1070 1080 1090
1060 1070 1080 1090 1100 1110
pF1KA0 CEILQKMNITYDNLRVLGNTSGLLQLLFNRSREHGTLWSLIIAKLILSRSISSDEVKPHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CEILQKMNITYDNLRVLGNTSGLLQLLFNRSREHGTLWSLIIAKLILSRSISSDEVKPHY
1100 1110 1120 1130 1140 1150
1120 1130 1140 1150 1160 1170
pF1KA0 KRKESFFPLTEGNLHTIQSLCPFLSKEEKKEFSAQCIPALLGWTKKDLCSTNGGFGHLAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KRKESFFPLTEGNLHTIQSLCPFLSKEEKKEFSAQCIPALLGWTKKDLCSTNGGFGHLAI
1160 1170 1180 1190 1200 1210
1180 1190 1200 1210 1220 1230
pF1KA0 FNSCLQTKSIDDGELLHGILKIIISWKKEHEDIFLFSCNLSEASPEVLGVNIEIIRFLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FNSCLQTKSIDDGELLHGILKIIISWKKEHEDIFLFSCNLSEASPEVLGVNIEIIRFLSL
1220 1230 1240 1250 1260 1270
1240 1250 1260 1270 1280 1290
pF1KA0 FLKYCSSPLAESEWDFIMCSMLAWLETTSENQALYSIPLVQLFACVSCDLACDLSAFFDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FLKYCSSPLAESEWDFIMCSMLAWLETTSENQALYSIPLVQLFACVSCDLACDLSAFFDS
1280 1290 1300 1310 1320 1330
1300 1310 1320 1330 1340 1350
pF1KA0 TTLDTIGNLPVNLISEWKEFFSQGIHSLLLPILVTVTGENKDVSETSFQNAMLKPMCETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TTLDTIGNLPVNLISEWKEFFSQGIHSLLLPILVTVTGENKDVSETSFQNAMLKPMCETL
1340 1350 1360 1370 1380 1390
1360 1370 1380 1390 1400 1410
pF1KA0 TYISKEQLLSHKLPARLVADQKTNLPEYLQTLLNTLAPLLLFRARPVQIAVYHMLYKLMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TYISKEQLLSHKLPARLVADQKTNLPEYLQTLLNTLAPLLLFRARPVQIAVYHMLYKLMP
1400 1410 1420 1430 1440 1450
1420 1430 1440 1450 1460 1470
pF1KA0 ELPQYDQDNLKSYGDEEEEPALSPPAALMSLLSIQEDLLENVLGCIPVGQIVTIKPLSED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ELPQYDQDNLKSYGDEEEEPALSPPAALMSLLSIQEDLLENVLGCIPVGQIVTIKPLSED
1460 1470 1480 1490 1500 1510
1480 1490 1500 1510 1520 1530
pF1KA0 FCYVLGYLLTWKLILTFFKAASSQLRALYSMYLRKTKSLNKLLYHLFRLMPENPTYAETA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FCYVLGYLLTWKLILTFFKAASSQLRALYSMYLRKTKSLNKLLYHLFRLMPENPTYAETA
1520 1530 1540 1550 1560 1570
1540 1550 1560 1570 1580 1590
pF1KA0 VEVPNKDPKTFFTEELQLSIRETTMLPYHIPHLACSVYHMTLKDLPAMVRLWWNSSEKRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VEVPNKDPKTFFTEELQLSIRETTMLPYHIPHLACSVYHMTLKDLPAMVRLWWNSSEKRV
1580 1590 1600 1610 1620 1630
1600 1610 1620 1630 1640 1650
pF1KA0 FNIVDRFTSKYVSSVLSFQEISSVQTSTQLFNGMTVKARATTREVMATYTIEDIVIELII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FNIVDRFTSKYVSSVLSFQEISSVQTSTQLFNGMTVKARATTREVMATYTIEDIVIELII
1640 1650 1660 1670 1680 1690
1660 1670 1680 1690 1700 1710
pF1KA0 QLPSNYPLGSIIVESGKRVGVAVQQWRNWMLQLSTYLTHQNGSIMEGLALWKNNVDKRFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QLPSNYPLGSIIVESGKRVGVAVQQWRNWMLQLSTYLTHQNGSIMEGLALWKNNVDKRFE
1700 1710 1720 1730 1740 1750
1720 1730 1740 1750 1760
pF1KA0 GVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETFF
1760 1770 1780 1790 1800 1810
1766 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 10:04:43 2016 done: Thu Nov 3 10:04:44 2016
Total Scan time: 4.620 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]