Result of FASTA (ccds) for
pF1KA0713
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0713, 957 aa
1>>>pF1KA0713 957 - 957 aa - 957 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8730+/-0.00105; mu= 18.5021+/- 0.063
mean_var=78.9245+/-15.751, 0's: 0 Z-trim(103.2): 63 B-trim: 0 in 0/53
Lambda= 0.144367
statistics sampled from 7239 (7294) to 7239 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.582), E-opt: 0.2 (0.224), width: 16
Scan time: 3.010
The best scores are: opt bits E(32554)
CCDS47551.1 SNX13 gene_id:23161|Hs108|chr7 ( 957) 6335 1330.0 0
CCDS34116.1 SNX25 gene_id:83891|Hs108|chr4 ( 840) 417 97.4 1.3e-19
>>CCDS47551.1 SNX13 gene_id:23161|Hs108|chr7 (957 aa)
initn: 6335 init1: 6335 opt: 6335 Z-score: 7126.3 bits: 1330.0 E(32554): 0
Smith-Waterman score: 6335; 100.0% identity (100.0% similar) in 957 aa overlap (1-957:1-957)
10 20 30 40 50 60
pF1KA0 MLTEASLSIWGWGSLGIVLFLITFGPFVIFYLTFYILCFVGGGLVVTLLFGKTNSEKYLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MLTEASLSIWGWGSLGIVLFLITFGPFVIFYLTFYILCFVGGGLVVTLLFGKTNSEKYLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 QCEHSFLPPTSPGVPKCLEEMKREARTIKIDRRLTGANIIDEPLQQVIQFSLRDYVQYWY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QCEHSFLPPTSPGVPKCLEEMKREARTIKIDRRLTGANIIDEPLQQVIQFSLRDYVQYWY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 YTLSDDESFLLEIRQTLQNALIQFATRSKEIDWQPYFTTRIVDDFGTHLRVFRKAQQKIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YTLSDDESFLLEIRQTLQNALIQFATRSKEIDWQPYFTTRIVDDFGTHLRVFRKAQQKIT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 EKDDQVKGTAEDLVDTFFEVEVEMEKEVCRDLVCTSPKDEEGFLRDLCEVLLYLLLPPGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EKDDQVKGTAEDLVDTFFEVEVEMEKEVCRDLVCTSPKDEEGFLRDLCEVLLYLLLPPGD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 FQNKIMRYFVREILARGILLPLINQLSDPDYINQYVIWMIRDSNCNYEAFMNIIKLSDNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FQNKIMRYFVREILARGILLPLINQLSDPDYINQYVIWMIRDSNCNYEAFMNIIKLSDNI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 GELEAVRDKAAEELQYLRSLDTAGDDINTIKNQINSLLFVKKVCDSRIQRLQSGKEINTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GELEAVRDKAAEELQYLRSLDTAGDDINTIKNQINSLLFVKKVCDSRIQRLQSGKEINTV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 KLAANFGKLCTVPLDSILVDNVALQFFMDYMQQTGGQAHLFFWMTVEGYRVTAQQQLEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KLAANFGKLCTVPLDSILVDNVALQFFMDYMQQTGGQAHLFFWMTVEGYRVTAQQQLEVL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 LSRQRDGKHQTNQTKGLLRAAAVGIYEQYLSEKASPRVTVDDYLVAKLADTLNHEDPTPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LSRQRDGKHQTNQTKGLLRAAAVGIYEQYLSEKASPRVTVDDYLVAKLADTLNHEDPTPE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 IFDDIQRKVYELMLRDERFYPSFRQNALYVRMLAELDMLKDPSFRGSDDGDGESFNGSPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IFDDIQRKVYELMLRDERFYPSFRQNALYVRMLAELDMLKDPSFRGSDDGDGESFNGSPT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 GSINLSLDDLSNVSSDDSVQLHAYISDTGVCNDHGKTYALYAITVHRRNLNSEEMWKTYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GSINLSLDDLSNVSSDDSVQLHAYISDTGVCNDHGKTYALYAITVHRRNLNSEEMWKTYR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 RYSDFHDFHMRITEQFESLSSILKLPGKKTFNNMDRDFLEKRKKDLNAYLQLLLAPEMMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RYSDFHDFHMRITEQFESLSSILKLPGKKTFNNMDRDFLEKRKKDLNAYLQLLLAPEMMK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 ASPALAHYVYDFLENKAYSKGKGDFARKMDTFVNPLRNSMRNVSNAVKSLPDSLAEGMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ASPALAHYVYDFLENKAYSKGKGDFARKMDTFVNPLRNSMRNVSNAVKSLPDSLAEGMTK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 MSDNMGKMSERLGQDIKQSFFKVPPLIPKTDSDPEHRRVSAQLDDNVDDNIPLRVMLLLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSDNMGKMSERLGQDIKQSFFKVPPLIPKTDSDPEHRRVSAQLDDNVDDNIPLRVMLLLM
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 DEVFDLKERNQWLRRNIKNLLQQLIRATYGDTINRKIVDHVDWMTSPEQVADSVKRFRDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DEVFDLKERNQWLRRNIKNLLQQLIRATYGDTINRKIVDHVDWMTSPEQVADSVKRFRDA
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 FWPNGILAEAVPCRDKSIRMRTRVAGKTKLLAIMPDELKHIIGAETTRKGILRVFEMFQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FWPNGILAEAVPCRDKSIRMRTRVAGKTKLLAIMPDELKHIIGAETTRKGILRVFEMFQH
850 860 870 880 890 900
910 920 930 940 950
pF1KA0 NQLNRRMVYVFLEGFLETLFPQYKFRELFNKLHSRSKQMQKYKQKLQTTQAPSLQKR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NQLNRRMVYVFLEGFLETLFPQYKFRELFNKLHSRSKQMQKYKQKLQTTQAPSLQKR
910 920 930 940 950
>>CCDS34116.1 SNX25 gene_id:83891|Hs108|chr4 (840 aa)
initn: 662 init1: 270 opt: 417 Z-score: 465.7 bits: 97.4 E(32554): 1.3e-19
Smith-Waterman score: 695; 25.2% identity (52.1% similar) in 929 aa overlap (100-924:1-829)
70 80 90 100 110 120
pF1KA0 TSPGVPKCLEEMKREARTIKIDRRLTGANIIDEPLQQVIQFSLRDYVQYWYYTLSDDESF
.:. :..:...: :::. :: .:: ::.
CCDS34 MDKALKEVFDYSYRDYILSWYGNLSRDEGQ
10 20 30
130 140 150 160 170 180
pF1KA0 LLEIR-QTLQNALIQFATRSKEIDWQPYFTTRIVDDFGTHLRVFRKAQQKITEKDDQVKG
: .. . . . :. : ...: . .: . ::. .. :. . ...: .
CCDS34 LYHLLLEDFWEIARQLHHRLSHVDVVKVVCNDVVRTLLTHFCDLKAANAR---HEEQPRP
40 50 60 70 80
190 200 210 220 230 240
pF1KA0 TAEDLVDTFFEVEVEMEKEVCRDLVCTSPKDEE-GFLRDLCEVLLYLLLPPGDFQNKIMR
: ... : .:.: ::. .::.. ::: : :. .:
CCDS34 ---------FVLHA-----------CLRNSDDEVRFLQTCSRVLVFCLLPSKDVQSLSLR
90 100 110 120
250 260 270 280 290
pF1KA0 YFVREILARGILLPLINQLSDPDYINQYVIWMI--RDSNC-----------NYEAFMNII
.. :::. .: :... ::.::::::... .. :.. .:: :...:
CCDS34 IMLAEILTTKVLKPVVELLSNPDYINQMLLAQLAYREQMNEHHKRAYTYAPSYEDFIKLI
130 140 150 160 170 180
300 310 320 330
pF1KA0 KLSDNIGELEAVRDKAAEE------------LQYLRSLDTAG--DDI---NTIKNQINSL
. .... :. .: . . : :. .. .::. :. ..: ::.:
CCDS34 NSNSDVEFLKQLRYQIVVEIIQATTISSFPQLKRHKGKETAAMKADLLRARNMKRYINQL
190 200 210 220 230 240
340 350 360 370 380 390
pF1KA0 LFVKKVCDSRIQRLQSGKEINTVKLAA-NFGK----LCTVPLDSILVDNVALQFFMDYMQ
.:: :..:: :. .: . . .: . :. . ...::... . : ::.
CCDS34 TVAKKQCEKRI-RILGGPAYDQQEDGALDEGEGPQSQKILQFEDILANTFYREHFGMYME
250 260 270 280 290 300
400 410 420 430 440 450
pF1KA0 QTGGQAHLFFWMTVEGYRVTAQQQLEVLLSRQRDGKHQTNQTKGLLRAAAVGIYEQYLSE
. .: . :: .:: : : .:. . . ::.... :
CCDS34 RMDKRALISFWESVE---------------------HLKNANKNEIPQLVGEIYQNFFVE
310 320 330 340
460 470 480 490 500 510
pF1KA0 KASPRVTVDDYLVAKLADTLNHEDPTPEIFDDIQRKVYELMLRDERFYPSFRQNALYVRM
: ...:. : .. . : . :.: ::. ::: :.: :.:::: . :: ..
CCDS34 --SKEISVEKSLYKEIQQCLVGNKGI-EVFYKIQEDVYET-LKD-RYYPSFIVSDLYEKL
350 360 370 380 390 400
520 530 540
pF1KA0 LAELD------MLKDPSFRGSDDGDGESFNGSPTGSIN---------------------L
: . . :... . : : :: . :..::
CCDS34 LIKEEEKHASQMISNKDEMGPRDEAGEEAVDDGTNQINEQASFAVNKLRELNEKLEYKRQ
410 420 430 440 450 460
550 560 570
pF1KA0 SLDDLSNVSSDDS-------------------VQLH---------------AYISDTGVC
.:....:. . :. .::: : :.. :
CCDS34 ALNSIQNAPKPDKKIVSKLKDEIILIEKERTDLQLHMARTDWWCENLGMWKASITSGEVT
470 480 490 500 510 520
580 590 600 610 620
pF1KA0 NDHGKTYALYAITVHRRNLNSEEM--WKTYRRYSDFHDFHMRITEQFESLSSILKLPG--
...:. : . : ..... : : . :: :.:...: ...: ::... .::.
CCDS34 EENGEQLPCYFVMVSLQEVGGVETKNWTVPRRLSEFQNLHRKLSECVPSLKKV-QLPSLS
530 540 550 560 570
630 640 650 660 670 680
pF1KA0 KKTFNNMDRDFLEKRKKDLNAYLQLLLAPEMMKASPALAHYVYDFLENKAYSKGKGDFAR
: :...:. :.:: :..:: .:: ::. : . : :: : :: . :. .
CCDS34 KLPFKSIDQKFMEKSKNQLNKFLQNLLSDERLCQSEAL----YAFLSPSP------DYLK
580 590 600 610 620
690 700 710 720 730 740
pF1KA0 KMDTFVNPLRNSMRNVSNAVKSLPDSLAEGMTKMSDNMGKMSERLGQDIKQSFFKVPPLI
.: :. .::. :: . : ::: .: ::.
CCDS34 VID--VQGKKNSF--------SLSSFL---------------ERLPRD----FFSHQEEE
630 640 650 660
750 760 770 780 790 800
pF1KA0 PKTDSDPEHRRVSAQLDDNVDD--NIPLRVMLLLMDEVFDLKERNQWLRRNIKNLLQQLI
. ::: .. :.:: . . ..:. :.:.:. .:.::. : :.
CCDS34 TEEDSD------LSDYGDDVDGRKDALAEPCFMLIGEIFELRGMFKWVRRT----LIALV
670 680 690 700 710
810 820 830 840 850 860
pF1KA0 RATYGDTINRKIVDHVDWMTSPEQVADSVKRFRDAFWPNGILAEAVPCRDKSIRMRTRVA
..:.: :::..: : :.:. : .... .. ::::::::: :: . :.: ..:.
CCDS34 QVTFGRTINKQIRDTVSWIFSEQMLVYYINIFRDAFWPNGKLAPPTTIRSKEQSQETKQR
720 730 740 750 760 770
870 880 890 900 910 920
pF1KA0 GKTKLLAIMPDELKHIIGAETTRKGILRVFEMFQHNQLNRRMVYVFLEGFLETLFPQYKF
.. ::: .:: :. ..: ...:.::...:. .:... :....:...: .: : :. .
CCDS34 AQQKLLENIPDMLQSLVGQQNARHGIIKIFNALQETRANKHLLYALMELLLIELCPELRV
780 790 800 810 820 830
930 940 950
pF1KA0 RELFNKLHSRSKQMQKYKQKLQTTQAPSLQKR
CCDS34 HLDQLKAGQV
840
957 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:34:20 2016 done: Wed Nov 2 19:34:20 2016
Total Scan time: 3.010 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]