Result of FASTA (ccds) for
pF1KA0700
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0700, 1130 aa
1>>>pF1KA0700 1130 - 1130 aa - 1130 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.5922+/-0.00096; mu= 9.1779+/- 0.059
mean_var=186.8007+/-37.325, 0's: 0 Z-trim(111.8): 5 B-trim: 0 in 0/54
Lambda= 0.093839
statistics sampled from 12633 (12637) to 12633 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.388), width: 16
Scan time: 4.960
The best scores are: opt bits E(32554)
CCDS74308.1 SIN3B gene_id:23309|Hs108|chr19 (1130) 7586 1040.1 0
CCDS77254.1 SIN3B gene_id:23309|Hs108|chr19 ( 720) 4759 657.2 3.8e-188
CCDS32946.1 SIN3B gene_id:23309|Hs108|chr19 (1162) 4757 657.1 6.8e-188
CCDS10279.1 SIN3A gene_id:25942|Hs108|chr15 (1273) 1885 268.3 8.1e-71
>>CCDS74308.1 SIN3B gene_id:23309|Hs108|chr19 (1130 aa)
initn: 7586 init1: 7586 opt: 7586 Z-score: 5556.9 bits: 1040.1 E(32554): 0
Smith-Waterman score: 7586; 100.0% identity (100.0% similar) in 1130 aa overlap (1-1130:1-1130)
10 20 30 40 50 60
pF1KA0 MAHAGGGSGGSGAGGPAGRGLSGARWGRSGSAGHEKLPVHVEDALTYLDQVKIRFGSDPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MAHAGGGSGGSGAGGPAGRGLSGARWGRSGSAGHEKLPVHVEDALTYLDQVKIRFGSDPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 TYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIPKNGKLNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIPKNGKLNI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 QSPLTSQENSHNHGDGAEDFKQQVPYKEDKPQVPLESDSVEFNNAISYVNKIKTRFLDHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QSPLTSQENSHNHGDGAEDFKQQVPYKEDKPQVPLESDSVEFNNAISYVNKIKTRFLDHP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 EIYRSFLEILHTYQKEQLNTRGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EIYRSFLEILHTYQKEQLNTRGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAKR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 SLFTGNGPCEMHSVQKNEHDKTPEHSRKRSRPSLLRPVSAPAKKKMKLRGTKDLSIAAVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SLFTGNGPCEMHSVQKNEHDKTPEHSRKRSRPSLLRPVSAPAKKKMKLRGTKDLSIAAVG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 KYGTLQEFSFFDKVRRVLKSQEVYENFLRCIALFNQELVSGSELLQLVSPFLGKFPELFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KYGTLQEFSFFDKVRRVLKSQEVYENFLRCIALFNQELVSGSELLQLVSPFLGKFPELFA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 QFKSFLGVKELSFAPPMSDRSGDGISREIDYASCKRIGSSYRALPKTYQQPKCSGRTAIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QFKSFLGVKELSFAPPMSDRSGDGISREIDYASCKRIGSSYRALPKTYQQPKCSGRTAIC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 KEVLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLESVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KEVLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLESVQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 KKLSRMAPEDQEKFRLDDSLGGTSEVIQRRAIYRIYGDKAPEIIESLKKNPVTAVPVVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KKLSRMAPEDQEKFRLDDSLGGTSEVIQRRAIYRIYGDKAPEIIESLKKNPVTAVPVVLK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 RLKAKEEEWREAQQGFNKIWREQYEKAYLKSLDHQAVNFKQNDTKALRSKSLLNEIESVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RLKAKEEEWREAQQGFNKIWREQYEKAYLKSLDHQAVNFKQNDTKALRSKSLLNEIESVY
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 DEHQEQHSEGRSAPSSEPHLIFVYEDRQILEDAAALISYYVKRQPAIQKEDQGTIHQLLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DEHQEQHSEGRSAPSSEPHLIFVYEDRQILEDAAALISYYVKRQPAIQKEDQGTIHQLLH
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 QFVPSLFFSQQLDLGASEESADEDRDSPQGQTTDPSERKKPAPGPHSSPPEEKGAFGDAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QFVPSLFFSQQLDLGASEESADEDRDSPQGQTTDPSERKKPAPGPHSSPPEEKGAFGDAP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 ATEQPPLPPPAPHKPLDDVYSLFFANNNWYFFLRLHQTLCSRLLKIYRQAQKQLLEYRTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ATEQPPLPPPAPHKPLDDVYSLFFANNNWYFFLRLHQTLCSRLLKIYRQAQKQLLEYRTE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 KEREKLLCEGRREKGSDPAMELRLKQPSEVELEEYYPAFLDMVRSLLEGSIDPTQYEDTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KEREKLLCEGRREKGSDPAMELRLKQPSEVELEEYYPAFLDMVRSLLEGSIDPTQYEDTL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 REMFTIHAYVGFTMDKLVQNIARQLHHLVSDDVCLKVVELYLNEKKRGAAGGNLSSRCVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 REMFTIHAYVGFTMDKLVQNIARQLHHLVSDDVCLKVVELYLNEKKRGAAGGNLSSRCVR
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 AARETSYQWKAERCMADENCFKVMFLQRKGQVIMTIELLDTEEAQTEDPVEVQHLARYVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AARETSYQWKAERCMADENCFKVMFLQRKGQVIMTIELLDTEEAQTEDPVEVQHLARYVE
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 QYVGTEGASSSPTEGFLLKPVFLQRNLKKFRRRWQSEQARALRGEARSSWKRLVGVESAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QYVGTEGASSSPTEGFLLKPVFLQRNLKKFRRRWQSEQARALRGEARSSWKRLVGVESAC
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 DVDCRFKLSTHKMVFIVNSEDYMYRRGTLCRAKQVQPLVLLRHHQHFEEWHSRWLEDNVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DVDCRFKLSTHKMVFIVNSEDYMYRRGTLCRAKQVQPLVLLRHHQHFEEWHSRWLEDNVT
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130
pF1KA0 VEAASLVQDWLMGEEDEDMVPCKTLCETVHVHGLPVTRYRVQYSRRPASP
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VEAASLVQDWLMGEEDEDMVPCKTLCETVHVHGLPVTRYRVQYSRRPASP
1090 1100 1110 1120 1130
>>CCDS77254.1 SIN3B gene_id:23309|Hs108|chr19 (720 aa)
initn: 4759 init1: 4759 opt: 4759 Z-score: 3491.3 bits: 657.2 E(32554): 3.8e-188
Smith-Waterman score: 4759; 99.9% identity (100.0% similar) in 709 aa overlap (422-1130:12-720)
400 410 420 430 440 450
pF1KA0 ASCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWSEDSTFVSSKKTPYEEQ
.:::::::::::::::::::::::::::::
CCDS77 MQRHSRHFLLVQVLNDTWVSFPSWSEDSTFVSSKKTPYEEQ
10 20 30 40
460 470 480 490 500 510
pF1KA0 LHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPEDQEKFRLDDSLGGTSEVIQRRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPEDQEKFRLDDSLGGTSEVIQRRA
50 60 70 80 90 100
520 530 540 550 560 570
pF1KA0 IYRIYGDKAPEIIESLKKNPVTAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAYLKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 IYRIYGDKAPEIIESLKKNPVTAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAYLKS
110 120 130 140 150 160
580 590 600 610 620 630
pF1KA0 LDHQAVNFKQNDTKALRSKSLLNEIESVYDEHQEQHSEGRSAPSSEPHLIFVYEDRQILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LDHQAVNFKQNDTKALRSKSLLNEIESVYDEHQEQHSEGRSAPSSEPHLIFVYEDRQILE
170 180 190 200 210 220
640 650 660 670 680 690
pF1KA0 DAAALISYYVKRQPAIQKEDQGTIHQLLHQFVPSLFFSQQLDLGASEESADEDRDSPQGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DAAALISYYVKRQPAIQKEDQGTIHQLLHQFVPSLFFSQQLDLGASEESADEDRDSPQGQ
230 240 250 260 270 280
700 710 720 730 740 750
pF1KA0 TTDPSERKKPAPGPHSSPPEEKGAFGDAPATEQPPLPPPAPHKPLDDVYSLFFANNNWYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 TTDPSERKKPAPGPHSSPPEEKGAFGDAPATEQPPLPPPAPHKPLDDVYSLFFANNNWYF
290 300 310 320 330 340
760 770 780 790 800 810
pF1KA0 FLRLHQTLCSRLLKIYRQAQKQLLEYRTEKEREKLLCEGRREKGSDPAMELRLKQPSEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FLRLHQTLCSRLLKIYRQAQKQLLEYRTEKEREKLLCEGRREKGSDPAMELRLKQPSEVE
350 360 370 380 390 400
820 830 840 850 860 870
pF1KA0 LEEYYPAFLDMVRSLLEGSIDPTQYEDTLREMFTIHAYVGFTMDKLVQNIARQLHHLVSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LEEYYPAFLDMVRSLLEGSIDPTQYEDTLREMFTIHAYVGFTMDKLVQNIARQLHHLVSD
410 420 430 440 450 460
880 890 900 910 920 930
pF1KA0 DVCLKVVELYLNEKKRGAAGGNLSSRCVRAARETSYQWKAERCMADENCFKVMFLQRKGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DVCLKVVELYLNEKKRGAAGGNLSSRCVRAARETSYQWKAERCMADENCFKVMFLQRKGQ
470 480 490 500 510 520
940 950 960 970 980 990
pF1KA0 VIMTIELLDTEEAQTEDPVEVQHLARYVEQYVGTEGASSSPTEGFLLKPVFLQRNLKKFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VIMTIELLDTEEAQTEDPVEVQHLARYVEQYVGTEGASSSPTEGFLLKPVFLQRNLKKFR
530 540 550 560 570 580
1000 1010 1020 1030 1040 1050
pF1KA0 RRWQSEQARALRGEARSSWKRLVGVESACDVDCRFKLSTHKMVFIVNSEDYMYRRGTLCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 RRWQSEQARALRGEARSSWKRLVGVESACDVDCRFKLSTHKMVFIVNSEDYMYRRGTLCR
590 600 610 620 630 640
1060 1070 1080 1090 1100 1110
pF1KA0 AKQVQPLVLLRHHQHFEEWHSRWLEDNVTVEAASLVQDWLMGEEDEDMVPCKTLCETVHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AKQVQPLVLLRHHQHFEEWHSRWLEDNVTVEAASLVQDWLMGEEDEDMVPCKTLCETVHV
650 660 670 680 690 700
1120 1130
pF1KA0 HGLPVTRYRVQYSRRPASP
:::::::::::::::::::
CCDS77 HGLPVTRYRVQYSRRPASP
710 720
>>CCDS32946.1 SIN3B gene_id:23309|Hs108|chr19 (1162 aa)
initn: 4757 init1: 4757 opt: 4757 Z-score: 3486.8 bits: 657.1 E(32554): 6.8e-188
Smith-Waterman score: 7512; 97.2% identity (97.2% similar) in 1162 aa overlap (1-1130:1-1162)
10 20 30 40 50 60
pF1KA0 MAHAGGGSGGSGAGGPAGRGLSGARWGRSGSAGHEKLPVHVEDALTYLDQVKIRFGSDPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAHAGGGSGGSGAGGPAGRGLSGARWGRSGSAGHEKLPVHVEDALTYLDQVKIRFGSDPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 TYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIPKNGKLNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIPKNGKLNI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 QSPLTSQENSHNHGDGAEDFKQQVPYKEDKPQVPLESDSVEFNNAISYVNKIKTRFLDHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QSPLTSQENSHNHGDGAEDFKQQVPYKEDKPQVPLESDSVEFNNAISYVNKIKTRFLDHP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 EIYRSFLEILHTYQKEQLNTRGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EIYRSFLEILHTYQKEQLNTRGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAKR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 SLFTGNGPCEMHSVQKNEHDKTPEHSRKRSRPSLLRPVSAPAKKKMKLRGTKDLSIAAVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SLFTGNGPCEMHSVQKNEHDKTPEHSRKRSRPSLLRPVSAPAKKKMKLRGTKDLSIAAVG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 KYGTLQEFSFFDKVRRVLKSQEVYENFLRCIALFNQELVSGSELLQLVSPFLGKFPELFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KYGTLQEFSFFDKVRRVLKSQEVYENFLRCIALFNQELVSGSELLQLVSPFLGKFPELFA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 QFKSFLGVKELSFAPPMSDRSGDGISREIDYASCKRIGSSYRALPKTYQQPKCSGRTAIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QFKSFLGVKELSFAPPMSDRSGDGISREIDYASCKRIGSSYRALPKTYQQPKCSGRTAIC
370 380 390 400 410 420
430 440
pF1KA0 KE--------------------------------VLNDTWVSFPSWSEDSTFVSSKKTPY
:: ::::::::::::::::::::::::::
CCDS32 KELDHWTLLQGSWTDDYCMSKFKNTCWIPGYSAGVLNDTWVSFPSWSEDSTFVSSKKTPY
430 440 450 460 470 480
450 460 470 480 490 500
pF1KA0 EEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPEDQEKFRLDDSLGGTSEVIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPEDQEKFRLDDSLGGTSEVIQ
490 500 510 520 530 540
510 520 530 540 550 560
pF1KA0 RRAIYRIYGDKAPEIIESLKKNPVTAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RRAIYRIYGDKAPEIIESLKKNPVTAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAY
550 560 570 580 590 600
570 580 590 600 610 620
pF1KA0 LKSLDHQAVNFKQNDTKALRSKSLLNEIESVYDEHQEQHSEGRSAPSSEPHLIFVYEDRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LKSLDHQAVNFKQNDTKALRSKSLLNEIESVYDEHQEQHSEGRSAPSSEPHLIFVYEDRQ
610 620 630 640 650 660
630 640 650 660 670 680
pF1KA0 ILEDAAALISYYVKRQPAIQKEDQGTIHQLLHQFVPSLFFSQQLDLGASEESADEDRDSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ILEDAAALISYYVKRQPAIQKEDQGTIHQLLHQFVPSLFFSQQLDLGASEESADEDRDSP
670 680 690 700 710 720
690 700 710 720 730 740
pF1KA0 QGQTTDPSERKKPAPGPHSSPPEEKGAFGDAPATEQPPLPPPAPHKPLDDVYSLFFANNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QGQTTDPSERKKPAPGPHSSPPEEKGAFGDAPATEQPPLPPPAPHKPLDDVYSLFFANNN
730 740 750 760 770 780
750 760 770 780 790 800
pF1KA0 WYFFLRLHQTLCSRLLKIYRQAQKQLLEYRTEKEREKLLCEGRREKGSDPAMELRLKQPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 WYFFLRLHQTLCSRLLKIYRQAQKQLLEYRTEKEREKLLCEGRREKGSDPAMELRLKQPS
790 800 810 820 830 840
810 820 830 840 850 860
pF1KA0 EVELEEYYPAFLDMVRSLLEGSIDPTQYEDTLREMFTIHAYVGFTMDKLVQNIARQLHHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EVELEEYYPAFLDMVRSLLEGSIDPTQYEDTLREMFTIHAYVGFTMDKLVQNIARQLHHL
850 860 870 880 890 900
870 880 890 900 910 920
pF1KA0 VSDDVCLKVVELYLNEKKRGAAGGNLSSRCVRAARETSYQWKAERCMADENCFKVMFLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VSDDVCLKVVELYLNEKKRGAAGGNLSSRCVRAARETSYQWKAERCMADENCFKVMFLQR
910 920 930 940 950 960
930 940 950 960 970 980
pF1KA0 KGQVIMTIELLDTEEAQTEDPVEVQHLARYVEQYVGTEGASSSPTEGFLLKPVFLQRNLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KGQVIMTIELLDTEEAQTEDPVEVQHLARYVEQYVGTEGASSSPTEGFLLKPVFLQRNLK
970 980 990 1000 1010 1020
990 1000 1010 1020 1030 1040
pF1KA0 KFRRRWQSEQARALRGEARSSWKRLVGVESACDVDCRFKLSTHKMVFIVNSEDYMYRRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KFRRRWQSEQARALRGEARSSWKRLVGVESACDVDCRFKLSTHKMVFIVNSEDYMYRRGT
1030 1040 1050 1060 1070 1080
1050 1060 1070 1080 1090 1100
pF1KA0 LCRAKQVQPLVLLRHHQHFEEWHSRWLEDNVTVEAASLVQDWLMGEEDEDMVPCKTLCET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LCRAKQVQPLVLLRHHQHFEEWHSRWLEDNVTVEAASLVQDWLMGEEDEDMVPCKTLCET
1090 1100 1110 1120 1130 1140
1110 1120 1130
pF1KA0 VHVHGLPVTRYRVQYSRRPASP
::::::::::::::::::::::
CCDS32 VHVHGLPVTRYRVQYSRRPASP
1150 1160
>>CCDS10279.1 SIN3A gene_id:25942|Hs108|chr15 (1273 aa)
initn: 3914 init1: 1503 opt: 1885 Z-score: 1384.9 bits: 268.3 E(32554): 8.1e-71
Smith-Waterman score: 3851; 52.7% identity (75.8% similar) in 1162 aa overlap (44-1130:126-1273)
20 30 40 50 60 70
pF1KA0 GGPAGRGLSGARWGRSGSAGHEKLPVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFK
::.::::::..:::.: .:: ::.::::::
CCDS10 GQVVQSHAHPAPPVAPVQGQQQFQRLKVEDALSYLDQVKLQFGSQPQVYNDFLDIMKEFK
100 110 120 130 140 150
80 90 100 110 120
pF1KA0 SQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIPKNGKLNIQSP----------
:::::::::: ::::::. :::::.:::.::: ::.:.. : .:. .:
CCDS10 SQSIDTPGVISRVSQLFKGHPDLIMGFNTFLPPGYKIEVQTNDMVNVTTPGQVHQIPTHG
160 170 180 190 200 210
130 140 150
pF1KA0 ----------LTSQENSHNHGDGAEDFKQQVPYKEDKP-----------QVP--------
:: .... :. : : : .:: :.:
CCDS10 IQPQPQPPPQHPSQPSAQSAPAPAQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASP
220 230 240 250 260 270
160 170 180 190
pF1KA0 --------------------LESDS-VEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTY
:.... ::::.::.::::::.:: .:.::..::::::::
CCDS10 RSPPVQPHTPVTISLGTAPSLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTY
280 290 300 310 320 330
200 210 220 230 240 250
pF1KA0 QKEQLNTR---GRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAKRSLFTGNGPCE
:::: :.. : ...:.::...:: ::..:::::::::::::.:. :.. .. :
CCDS10 QKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPDANSSVLLSKTTAE
340 350 360 370 380 390
260 270 280 290
pF1KA0 MHSVQKNEHD---KTPEHSRKRSRPSL----LR--PV--SAPAKKKMKLRGTKDLSIAAV
. .:.: : :. . : .::: .: :. . :.::: :: . :: :.: .
CCDS10 KVDSVRNDHGGTVKKPQLNNKPQRPSQNGCQIRRHPTGTTPPVKKKPKLLNLKDSSMADA
400 410 420 430 440 450
300 310 320 330 340 350
pF1KA0 GKYGTLQEFSFFDKVRRVLKSQEVYENFLRCIALFNQELVSGSELLQLVSPFLGKFPELF
.:.: : ::::::..:.: :.:::::::...::::..: .::.::::::::::::::
CCDS10 SKHGGGTESLFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELF
460 470 480 490 500 510
360 370 380 390 400 410
pF1KA0 AQFKSFLGVKE-LSFAPPMSDRSGDGISREIDYASCKRIGSSYRALPKTYQQPKCSGRTA
::.::: :: . . ..:. .::. :::::::::.:::::::::.::::::.:::
CCDS10 NWFKNFLGYKESVHLETYPKERATEGIAMEIDYASCKRLGSSYRALPKSYQQPKCTGRTP
520 530 540 550 560 570
420 430 440 450 460 470
pF1KA0 ICKEVLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLES
.::::::::::::::::::::::::::: :::...::::::::::::::::::::::::.
CCDS10 LCKEVLNDTWVSFPSWSEDSTFVSSKKTQYEEHIYRCEDERFELDVVLETNLATIRVLEA
580 590 600 610 620 630
480 490 500 510 520 530
pF1KA0 VQKKLSRMAPEDQEKFRLDDSLGGTSEVIQRRAIYRIYGDKAPEIIESLKKNPVTAVPVV
.::::::.. :.: :::::..::::::::.:.:. :::.::: .::..:.::: :::.:
CCDS10 IQKKLSRLSAEEQAKFRLDNTLGGTSEVIHRKALQRIYADKAADIIDGLRKNPSIAVPIV
640 650 660 670 680 690
540 550 560 570 580 590
pF1KA0 LKRLKAKEEEWREAQQGFNKIWREQYEKAYLKSLDHQAVNFKQNDTKALRSKSLLNEIES
::::: :::::::::.::::.:::: :: ::::::::..::::::::.::::::::::::
CCDS10 LKRLKMKEEEWREAQRGFNKVWREQNEKYYLKSLDHQGINFKQNDTKVLRSKSLLNEIES
700 710 720 730 740 750
600 610 620 630 640 650
pF1KA0 VYDEHQEQHSEGRSAPSSEPHLIFVYEDRQILEDAAALISYYVKRQPAIQKEDQGTIHQL
.:::.::: .: .. ::: ..:::.:::::::::: ..:::: .:::::. :.:.
CCDS10 IYDERQEQATEENAGVPVGPHLSLAYEDKQILEDAAALIIHHVKRQTGIQKEDKYKIKQI
760 770 780 790 800 810
660 670 680 690 700 710
pF1KA0 LHQFVPSLFFSQQLDLGASEESADEDRDSPQGQTTDPSERKKPAPGPHSSPPEEKGAFGD
.:.:.:.:.:.:. ::. :: .:. : .. : .... . : :::. : :..
CCDS10 MHHFIPDLLFAQRGDLSDVEEEEEEEMDVDEA--TGAVKKHNGVGG---SPPKSKLLFSN
820 830 840 850 860 870
720 730 740 750 760 770
pF1KA0 APATEQPPLPPPAPHKPLDDVYSLFFANNNWYFFLRLHQTLCSRLLKIYRQAQKQLLEYR
. : . . .:.::.::..:::::.:.:::: :: :::.: ::..:. :
CCDS10 TAAQKL---------RGMDEVYNLFYVNNNWYIFMRLHQILCLRLLRICSQAERQIEEEN
880 890 900 910 920
780 790 800 810 820 830
pF1KA0 TEKEREKLLCEGRREKGSDPAMELRLKQPSEVELEEYYPAFLDMVRSLLEGSIDPTQYED
:.: :. . .:.:...::..::::.: .:..:.:::::::::::::.:.:: .::::
CCDS10 REREWEREVLGIKRDKSDSPAIQLRLKEPMDVDVEDYYPAFLDMVRSLLDGNIDSSQYED
930 940 950 960 970 980
840 850 860 870 880 890
pF1KA0 TLREMFTIHAYVGFTMDKLVQNIARQLHHLVSDDVCLKVVELYLNEKKRGAAGGNLSSRC
.::::::::::..::::::.:.:.:::.:.:::..:..:..::: :.. ::.::.:...
CCDS10 SLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEICVQVTDLYLAENNNGATGGQLNTQN
990 1000 1010 1020 1030 1040
900 910 920 930 940 950
pF1KA0 VRAARETSYQWKAERCMADENCFKVMFLQRKGQVIMTIELLDTEEAQTEDPVEVQHLARY
:. :..:: :::. :.::::::.::.: .::: .::::::::: ...::::... . :
CCDS10 SRSLLESTYQRKAEQLMSDENCFKLMFIQSQGQVQLTIELLDTEEENSDDPVEAERWSDY
1050 1060 1070 1080 1090 1100
960 970 980 990 1000 1010
pF1KA0 VEQYVGTEGASSSPTEGFLLKPVFLQRNLKKFRRRWQSEQARALRGEARSSWKRLVGVES
::.:.... .: : . ::::: :::...:. .... . .:. .: : . .:.:
CCDS10 VERYMNSDTTSPELREHLAQKPVFLPRNLRRIRKCQRGREQQEKEGKEGNSKKTMENVDS
1110 1120 1130 1140 1150 1160
1020 1030 1040 1050 1060 1070
pF1KA0 ACDVDCRFKLSTHKMVFIVNSEDYMYRRGTLCRAKQVQPLVLLRHHQHFEEWHSRWLEDN
..:::::...:::....:::::::: .: ::.: . : : ::.:. : ..: ...
CCDS10 LDKLECRFKLNSYKMVYVIKSEDYMYRRTALLRAHQSHERVSKRLHQRFQAWVDKWTKEH
1170 1180 1190 1200 1210 1220
1080 1090 1100 1110 1120 1130
pF1KA0 VTVEAASLVQDWLMGEEDEDMVPCKTLCETVHVHGLPVTRYRVQYSRRPASP
: : :. .. ::::: : .::: : :.: .: . ...:::.:. .:
CCDS10 VPREMAAETSKWLMGEGLEGLVPCTTTCDTETLHFVSINKYRVKYGTVFKAP
1230 1240 1250 1260 1270
1130 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 00:57:08 2016 done: Fri Nov 4 00:57:09 2016
Total Scan time: 4.960 Total Display time: 0.210
Function used was FASTA [36.3.4 Apr, 2011]