Result of FASTA (omim) for
pF1KA0691
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0691, 753 aa
1>>>pF1KA0691 753 - 753 aa - 753 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 17.3919+/-0.000496; mu= -34.0854+/- 0.031
mean_var=826.0146+/-171.689, 0's: 0 Z-trim(125.1): 29 B-trim: 0 in 0/61
Lambda= 0.044625
statistics sampled from 48148 (48193) to 48148 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.565), width: 16
Scan time: 14.900
The best scores are: opt bits E(85289)
NP_055331 (OMIM: 604910) CCR4-NOT transcription co ( 753) 5080 342.6 3.6e-93
XP_005278339 (OMIM: 604910) PREDICTED: CCR4-NOT tr ( 754) 5068 341.8 6.1e-93
XP_005278338 (OMIM: 604910) PREDICTED: CCR4-NOT tr ( 770) 4851 327.9 9.9e-89
XP_011525294 (OMIM: 604910) PREDICTED: CCR4-NOT tr ( 757) 4839 327.1 1.7e-88
XP_005278336 (OMIM: 604910) PREDICTED: CCR4-NOT tr ( 771) 4839 327.1 1.7e-88
XP_005278337 (OMIM: 604910) PREDICTED: CCR4-NOT tr ( 771) 4839 327.1 1.7e-88
XP_011525295 (OMIM: 604910) PREDICTED: CCR4-NOT tr ( 682) 4547 308.3 7e-83
>>NP_055331 (OMIM: 604910) CCR4-NOT transcription comple (753 aa)
initn: 5080 init1: 5080 opt: 5080 Z-score: 1793.8 bits: 342.6 E(85289): 3.6e-93
Smith-Waterman score: 5080; 100.0% identity (100.0% similar) in 753 aa overlap (1-753:1-753)
10 20 30 40 50 60
pF1KA0 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 TSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 AKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 PSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 GKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 GGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEPL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 SSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGVC
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 PLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 EFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFE
670 680 690 700 710 720
730 740 750
pF1KA0 QGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
:::::::::::::::::::::::::::::::::
NP_055 QGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
730 740 750
>>XP_005278339 (OMIM: 604910) PREDICTED: CCR4-NOT transc (754 aa)
initn: 4057 init1: 4057 opt: 5068 Z-score: 1789.6 bits: 341.8 E(85289): 6.1e-93
Smith-Waterman score: 5068; 99.9% identity (99.9% similar) in 754 aa overlap (1-753:1-754)
10 20 30 40 50 60
pF1KA0 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
70 80 90 100 110 120
130 140 150 160 170
pF1KA0 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKD-KQDRIEGLKRHIEKHRYH
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
XP_005 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHIEKHRYH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA0 VRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA0 ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQS
250 260 270 280 290 300
300 310 320 330 340 350
pF1KA0 PAKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PAKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASP
310 320 330 340 350 360
360 370 380 390 400 410
pF1KA0 APSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 APSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGG
370 380 390 400 410 420
420 430 440 450 460 470
pF1KA0 AGKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTG
430 440 450 460 470 480
480 490 500 510 520 530
pF1KA0 AGGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEP
490 500 510 520 530 540
540 550 560 570 580 590
pF1KA0 LSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGV
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA0 CPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDT
610 620 630 640 650 660
660 670 680 690 700 710
pF1KA0 VEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEF
670 680 690 700 710 720
720 730 740 750
pF1KA0 EQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
::::::::::::::::::::::::::::::::::
XP_005 EQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
730 740 750
>>XP_005278338 (OMIM: 604910) PREDICTED: CCR4-NOT transc (770 aa)
initn: 4851 init1: 4851 opt: 4851 Z-score: 1714.0 bits: 327.9 E(85289): 9.9e-89
Smith-Waterman score: 5036; 97.8% identity (97.8% similar) in 770 aa overlap (1-753:1-770)
10 20 30 40 50 60
pF1KA0 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 TSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 AKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 PSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 GKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 GGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEPL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 SSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGVC
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 PLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 EFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFE
670 680 690 700 710 720
730 740 750
pF1KA0 Q-----------------GTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
: ::::::::::::::::::::::::::::::::
XP_005 QIPDHLLVHSLTAFSPGQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
730 740 750 760 770
>>XP_011525294 (OMIM: 604910) PREDICTED: CCR4-NOT transc (757 aa)
initn: 3828 init1: 3828 opt: 4839 Z-score: 1709.9 bits: 327.1 E(85289): 1.7e-88
Smith-Waterman score: 4839; 99.9% identity (99.9% similar) in 722 aa overlap (1-721:1-722)
10 20 30 40 50 60
pF1KA0 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
70 80 90 100 110 120
130 140 150 160 170
pF1KA0 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKD-KQDRIEGLKRHIEKHRYH
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
XP_011 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHIEKHRYH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA0 VRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA0 ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQS
250 260 270 280 290 300
300 310 320 330 340 350
pF1KA0 PAKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PAKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASP
310 320 330 340 350 360
360 370 380 390 400 410
pF1KA0 APSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGG
370 380 390 400 410 420
420 430 440 450 460 470
pF1KA0 AGKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTG
430 440 450 460 470 480
480 490 500 510 520 530
pF1KA0 AGGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEP
490 500 510 520 530 540
540 550 560 570 580 590
pF1KA0 LSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGV
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA0 CPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDT
610 620 630 640 650 660
660 670 680 690 700 710
pF1KA0 VEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEF
670 680 690 700 710 720
720 730 740 750
pF1KA0 EQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
::
XP_011 EQLAQSLSLTKYSSLWLSAQPGTPPSHPPLGQLLGLL
730 740 750
>>XP_005278336 (OMIM: 604910) PREDICTED: CCR4-NOT transc (771 aa)
initn: 3828 init1: 3828 opt: 4839 Z-score: 1709.8 bits: 327.1 E(85289): 1.7e-88
Smith-Waterman score: 5024; 97.7% identity (97.7% similar) in 771 aa overlap (1-753:1-771)
10 20 30 40 50 60
pF1KA0 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
70 80 90 100 110 120
130 140 150 160 170
pF1KA0 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKD-KQDRIEGLKRHIEKHRYH
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
XP_005 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHIEKHRYH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA0 VRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA0 ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQS
250 260 270 280 290 300
300 310 320 330 340 350
pF1KA0 PAKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PAKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASP
310 320 330 340 350 360
360 370 380 390 400 410
pF1KA0 APSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 APSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGG
370 380 390 400 410 420
420 430 440 450 460 470
pF1KA0 AGKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTG
430 440 450 460 470 480
480 490 500 510 520 530
pF1KA0 AGGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEP
490 500 510 520 530 540
540 550 560 570 580 590
pF1KA0 LSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGV
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA0 CPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDT
610 620 630 640 650 660
660 670 680 690 700 710
pF1KA0 VEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEF
670 680 690 700 710 720
720 730 740 750
pF1KA0 EQ-----------------GTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
:: ::::::::::::::::::::::::::::::::
XP_005 EQIPDHLLVHSLTAFSPGQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
730 740 750 760 770
>>XP_005278337 (OMIM: 604910) PREDICTED: CCR4-NOT transc (771 aa)
initn: 3828 init1: 3828 opt: 4839 Z-score: 1709.8 bits: 327.1 E(85289): 1.7e-88
Smith-Waterman score: 5024; 97.7% identity (97.7% similar) in 771 aa overlap (1-753:1-771)
10 20 30 40 50 60
pF1KA0 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
70 80 90 100 110 120
130 140 150 160 170
pF1KA0 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKD-KQDRIEGLKRHIEKHRYH
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
XP_005 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHIEKHRYH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA0 VRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA0 ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQS
250 260 270 280 290 300
300 310 320 330 340 350
pF1KA0 PAKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PAKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASP
310 320 330 340 350 360
360 370 380 390 400 410
pF1KA0 APSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 APSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGG
370 380 390 400 410 420
420 430 440 450 460 470
pF1KA0 AGKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTG
430 440 450 460 470 480
480 490 500 510 520 530
pF1KA0 AGGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEP
490 500 510 520 530 540
540 550 560 570 580 590
pF1KA0 LSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGV
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA0 CPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDT
610 620 630 640 650 660
660 670 680 690 700 710
pF1KA0 VEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEF
670 680 690 700 710 720
720 730 740 750
pF1KA0 EQ-----------------GTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
:: ::::::::::::::::::::::::::::::::
XP_005 EQIPDHLLVHSLTAFSPGQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
730 740 750 760 770
>>XP_011525295 (OMIM: 604910) PREDICTED: CCR4-NOT transc (682 aa)
initn: 3536 init1: 3536 opt: 4547 Z-score: 1608.9 bits: 308.3 E(85289): 7e-83
Smith-Waterman score: 4547; 99.9% identity (99.9% similar) in 680 aa overlap (1-679:1-680)
10 20 30 40 50 60
pF1KA0 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
70 80 90 100 110 120
130 140 150 160 170
pF1KA0 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKD-KQDRIEGLKRHIEKHRYH
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
XP_011 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHIEKHRYH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA0 VRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA0 ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQS
250 260 270 280 290 300
300 310 320 330 340 350
pF1KA0 PAKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PAKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASP
310 320 330 340 350 360
360 370 380 390 400 410
pF1KA0 APSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGG
370 380 390 400 410 420
420 430 440 450 460 470
pF1KA0 AGKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTG
430 440 450 460 470 480
480 490 500 510 520 530
pF1KA0 AGGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEP
490 500 510 520 530 540
540 550 560 570 580 590
pF1KA0 LSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGV
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA0 CPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDT
610 620 630 640 650 660
660 670 680 690 700 710
pF1KA0 VEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEF
::::::::::::::::::::
XP_011 VEFYQRLSTETLFFIFYYLELL
670 680
753 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 10:03:07 2016 done: Thu Nov 3 10:03:09 2016
Total Scan time: 14.900 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]