FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0691, 753 aa
  1>>>pF1KA0691 753 - 753 aa - 753 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 16.0906+/-0.00118; mu= -26.5026+/- 0.071
 mean_var=700.2512+/-146.161, 0's: 0 Z-trim(117.1): 23  B-trim: 0 in 0/56
 Lambda= 0.048467
 statistics sampled from 17814 (17836) to 17814 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.548), width:  16
 Scan time:  5.060

The best scores are:                                      opt bits E(32554)
CCDS12880.1 CNOT3 gene_id:4849|Hs108|chr19         ( 753) 5080 370.4 5.7e-102


>>CCDS12880.1 CNOT3 gene_id:4849|Hs108|chr19              (753 aa)
 initn: 5080 init1: 5080 opt: 5080  Z-score: 1944.1  bits: 370.4 E(32554): 5.7e-102
Smith-Waterman score: 5080; 100.0% identity (100.0% similar) in 753 aa overlap (1-753:1-753)

               10        20        30        40        50        60
pF1KA0 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 TSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 AKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 PSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 GKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 GGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSDAKAAGALLNGPPQFSTAPEIKAPEPL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 SSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGVC
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 PLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 EFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFE
              670       680       690       700       710       720

              730       740       750   
pF1KA0 QGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
       :::::::::::::::::::::::::::::::::
CCDS12 QGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
              730       740       750   




753 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 10:03:06 2016 done: Thu Nov  3 10:03:07 2016
 Total Scan time:  5.060 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]