FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0682, 960 aa
  1>>>pF1KA0682 960 - 960 aa - 960 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6514+/-0.00119; mu= 8.7952+/- 0.072
 mean_var=275.4034+/-57.661, 0's: 0 Z-trim(110.2): 74  B-trim: 0 in 0/51
 Lambda= 0.077284
 statistics sampled from 11389 (11446) to 11389 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.352), width:  16
 Scan time:  4.080

The best scores are:                                      opt bits E(32554)
CCDS9172.1 RBM19 gene_id:9904|Hs108|chr12          ( 960) 6226 708.7 1.3e-203


>>CCDS9172.1 RBM19 gene_id:9904|Hs108|chr12               (960 aa)
 initn: 6226 init1: 6226 opt: 6226  Z-score: 3768.7  bits: 708.7 E(32554): 1.3e-203
Smith-Waterman score: 6226; 99.4% identity (99.9% similar) in 960 aa overlap (1-960:1-960)

               10        20        30        40        50        60
pF1KA0 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 HFNKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTPEIKKDEKKKKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 HFNKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTPEIKKDEKKKKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 AGQLEKLKEDTEFQEFLSVHRRRAQAATWANDGLDAEPSKGKSKPASDYLNFDSDSGQES
       ::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
CCDS91 AGQLEKLKEDTEFQEFLSVHQRRAQAATWANDGLDAEPSKGKSKPASDYLNFDSDSGQES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 EEEGAGEDLEEEASLEPKAAVQKELSDMDYLKSKMVKAGSSSSSEEEESEDEAVHCDEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 EEEGAGEDLEEEASLEPKAAVQKELSDMDYLKSKMVKAGSSSSSEEEESEDEAVHCDEGS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 EAEEEDSSATPVLQERDSRGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLRG
       ::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::
CCDS91 EAEEEDSSATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLRG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 APFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 APFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 YIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 YIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 LFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 LFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 KKEASEDASALGSSSYKKKKEAQDKANSASSHNWNTLFMGPNAVADAIAQKYNATKSQVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 KKEASEDASALGSSSYKKKKEAQDKANSASSHNWNTLFMGPNAVADAIAQKYNATKSQVF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 DHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDSFSQAAAERSKTVILVKNLPAGTLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 DHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDSFSQAAAERSKTVILVKNLPAGTLA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 AELQETFGRFGSLGRVLLPEGGTTAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVG
       :.::::::.::::::::::::: :::::::::::::::::::::::::::::::::::::
CCDS91 AQLQETFGHFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVG
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 VFSSAAPQKKKLQDTPSEPMEKDPAEPETVPDGETPEDENPTEEGADNSSAKMEEEEEEE
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 VFSSTAPQKKKLQDTPSEPMEKDPAEPETVPDGETPEDENPTEEGADNSSAKMEEEEEEE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 EEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 EEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVE
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 YRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 YRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 FQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 FQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHL
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 YGRRLVLEWADSEVTLQALRRKTAAHFHEPPKKKRSVVLDEILEQLEGSDSDSEEQTLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 YGRRLVLEWADSEVTLQALRRKTAAHFHEPPKKKRSVVLDEILEQLEGSDSDSEEQTLQL
              910       920       930       940       950       960




960 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 19:31:30 2016 done: Wed Nov  2 19:31:31 2016
 Total Scan time:  4.080 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]