Result of FASTA (ccds) for
pF1KA0678
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0678, 2243 aa
1>>>pF1KA0678 2243 - 2243 aa - 2243 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3122+/-0.0015; mu= 19.5492+/- 0.090
mean_var=72.0302+/-14.484, 0's: 0 Z-trim(97.9): 54 B-trim: 252 in 2/47
Lambda= 0.151118
statistics sampled from 5162 (5198) to 5162 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.477), E-opt: 0.2 (0.16), width: 16
Scan time: 6.170
The best scores are: opt bits E(32554)
CCDS33857.1 DNAJC13 gene_id:23317|Hs108|chr3 (2243) 14760 3228.8 0
>>CCDS33857.1 DNAJC13 gene_id:23317|Hs108|chr3 (2243 aa)
initn: 14760 init1: 14760 opt: 14760 Z-score: 17375.1 bits: 3228.8 E(32554): 0
Smith-Waterman score: 14760; 99.9% identity (100.0% similar) in 2243 aa overlap (1-2243:1-2243)
10 20 30 40 50 60
pF1KA0 MNIIRENKDLACFYTTKHSWRGKYKRVFSVGTHAITTYNPNTLEVTNQWPYGDICSISPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MNIIRENKDLACFYTTKHSWRGKYKRVFSVGTHAITTYNPNTLEVTNQWPYGDICSISPV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 GKGQGTEFNLTFRKGSGKKSETLKFSTEHRTELLTEALRFRTDFSEGKITGRRYNCYKHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GKGQGTEFNLTFRKGSGKKSETLKFSTEHRTELLTEALRFRTDFSEGKITGRRYNCYKHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 WSDSRKPVILEVTPGGFDQINPATNRVLCSYDYRNIEGFVDLSDYQGGFCILYGGFSRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WSDSRKPVILEVTPGGFDQINPATNRVLCSYDYRNIEGFVDLSDYQGGFCILYGGFSRLH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 LFASEQREEIIKSAIDHAGNYIGISLRIRKEPLEFEQYLNLRFGKYSTDESITSLAEFVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LFASEQREEIIKSAIDHAGNYIGISLRIRKEPLEFEQYLNLRFGKYSTDESITSLAEFVV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 QKISPRHSEPVKRVLALTETCLVERDPATYNIATLKPLGEVFALVCDSENPQLFTIEFIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QKISPRHSEPVKRVLALTETCLVERDPATYNIATLKPLGEVFALVCDSENPQLFTIEFIK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 GQVRKYSSTERDSLLASLLDGVRASGNRDVCVKMTPTHKGQRWGLLSMPVDEEVESLHLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GQVRKYSSTERDSLLASLLDGVRASGNRDVCVKMTPTHKGQRWGLLSMPVDEEVESLHLR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 FLATPPNGNFADAVFRFNANISYSGVLHAVTQDGLFSENKEKLINNAITALLSQEGDVVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FLATPPNGNFADAVFRFNANISYSGVLHAVTQDGLFSENKEKLINNAITALLSQEGDVVA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 SNAELESQFQAVRRLVASKAGFLAFTQLPKFRERLGVKVVKALKRSNNGIIHAAVEMLCA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
CCDS33 SNAELESQFQAVRRLVASKAGFLAFTQLPKFRERLGVKVVKALKRSNNGIIHAAVDMLCA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 LMCPMHDDYDLRQEQLNKASLLSSKKFLENLLEKFNSHVDHGTGALVISSLLDFLTFALC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LMCPMHDDYDLRQEQLNKASLLSSKKFLENLLEKFNSHVDHGTGALVISSLLDFLTFALC
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 APYSETTEGQQFDMLLEMVASNGRTLFKLFQHPSMAIIKGAGLVMKAIIEEGDKEIATKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 APYSETTEGQQFDMLLEMVASNGRTLFKLFQHPSMAIIKGAGLVMKAIIEEGDKEIATKM
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 QELALSEGALPRHLHTAMFTISSDQRMLTNRQLSRHLVGLWTADNATATNLLKRILPPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QELALSEGALPRHLHTAMFTISSDQRMLTNRQLSRHLVGLWTADNATATNLLKRILPPGL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 LAYLESSDLVPEKDADRMHVRDNVKIAMDQYGKFNKVPEWQRLAGKAAKEVEKFAKEKVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LAYLESSDLVPEKDADRMHVRDNVKIAMDQYGKFNKVPEWQRLAGKAAKEVEKFAKEKVD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 LVLMHWRDRMGIAQKENINQKPVVLRKRRQRIKIEANWDLFYYRFGQDHARSNLIWNFKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LVLMHWRDRMGIAQKENINQKPVVLRKRRQRIKIEANWDLFYYRFGQDHARSNLIWNFKT
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 REELKDTLESEMRAFNIDRELGSANVISWNHHEFEVKYECLAEEIKIGDYYLRLLLEEDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 REELKDTLESEMRAFNIDRELGSANVISWNHHEFEVKYECLAEEIKIGDYYLRLLLEEDE
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 NEESGSIKRSYEFFNELYHRFLLTPKVNMKCLCLQALAIVYGRCHEEIGPFTDTRYIIGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NEESGSIKRSYEFFNELYHRFLLTPKVNMKCLCLQALAIVYGRCHEEIGPFTDTRYIIGM
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 LERCTDKLERDRLILFLNKLILNKKNVKDLMDSNGIRILVDLLTLAHLHVSRATVPLQSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LERCTDKLERDRLILFLNKLILNKKNVKDLMDSNGIRILVDLLTLAHLHVSRATVPLQSN
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 VIEAAPDMKRESEKEWYFGNADKERSGPYGFHEMQELWTKGMLNAKTRCWAQGMDGWRPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VIEAAPDMKRESEKEWYFGNADKERSGPYGFHEMQELWTKGMLNAKTRCWAQGMDGWRPL
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 QSIPQLKWCLLASGQAVLNETDLATLILNMLITMCGYFPSRDQDNAIIRPLPKVKRLLSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QSIPQLKWCLLASGQAVLNETDLATLILNMLITMCGYFPSRDQDNAIIRPLPKVKRLLSD
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 STCLPHIIQLLLTFDPILVEKVAILLYHIMQDNPQLPRLYLSGVFFFIMMYTGSNVLPVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 STCLPHIIQLLLTFDPILVEKVAILLYHIMQDNPQLPRLYLSGVFFFIMMYTGSNVLPVA
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 RFLKYTHTKQAFKSEETKGQDIFQRSILGHILPEAMVCYLENYEPEKFSEIFLGEFDTPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RFLKYTHTKQAFKSEETKGQDIFQRSILGHILPEAMVCYLENYEPEKFSEIFLGEFDTPE
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 AIWSSEMRRLMIEKIAAHLADFTPRLHSNTRALYQYCPIPIINYPQLENELFCNIYYLKQ
::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS33 AIWSSEMRRLMIEKIAAHLADFTPRLQSNTRALYQYCPIPIINYPQLENELFCNIYYLKQ
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 LCDTLRFPDWPIKDPVKLLKDTLDAWKKEVEKKPPMMSIDDAYEVLNLPQGQGPHDESKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LCDTLRFPDWPIKDPVKLLKDTLDAWKKEVEKKPPMMSIDDAYEVLNLPQGQGPHDESKI
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 RKAYFRLAQKYHPDKNPEGRDMFEKVNKAYEFLCTKSAKIVDGPDPENIILILKTQSILF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RKAYFRLAQKYHPDKNPEGRDMFEKVNKAYEFLCTKSAKIVDGPDPENIILILKTQSILF
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 NRHKEDLQPYKYAGYPMLIRTITMETSDDLLFSKESPLLPAATELAFHTVNCSALNAEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NRHKEDLQPYKYAGYPMLIRTITMETSDDLLFSKESPLLPAATELAFHTVNCSALNAEEL
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA0 RRENGLEVLQEAFSRCVAVLTRSSKPSDMSVQVCGYISKCYSVAAQFEECREKITEMPSI
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS33 RRENGLEVLQEAFSRCVAVLTRASKPSDMSVQVCGYISKCYSVAAQFEECREKITEMPSI
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA0 IKDLCRVLYFGKSIPRVAALGVECVSSFAVDFWLQTHLFQAGILWYLLGFLFNYDYTLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IKDLCRVLYFGKSIPRVAALGVECVSSFAVDFWLQTHLFQAGILWYLLGFLFNYDYTLEE
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KA0 SGIQKSEETNQQEVANSLAKLSVHALSRLGGYLAEEQATPENPTIRKSLAGMLTPYVARK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SGIQKSEETNQQEVANSLAKLSVHALSRLGGYLAEEQATPENPTIRKSLAGMLTPYVARK
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KA0 LAVASVTEILKMLNSNTESPYLIWNNSTRAELLEFLESQQENMIKKGDCDKTYGSEFVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LAVASVTEILKMLNSNTESPYLIWNNSTRAELLEFLESQQENMIKKGDCDKTYGSEFVYS
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KA0 DHAKELIVGEIFVRVYNEVPTFQLEVPKAFAASLLDYIGSQAQYLHTFMAITHAAKVESE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DHAKELIVGEIFVRVYNEVPTFQLEVPKAFAASLLDYIGSQAQYLHTFMAITHAAKVESE
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KA0 QHGDRLPRVEMALEALRNVIKYNPGSESECIGHFKLIFSLLRVHGAGQVQQLALEVVNIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QHGDRLPRVEMALEALRNVIKYNPGSESECIGHFKLIFSLLRVHGAGQVQQLALEVVNIV
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850 1860
pF1KA0 TSNQDCVNNIAESMVLSSLLALLHSLPSSRQLVLETLYALTSSTKIIKEAMAKGALIYLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TSNQDCVNNIAESMVLSSLLALLHSLPSSRQLVLETLYALTSSTKIIKEAMAKGALIYLL
1810 1820 1830 1840 1850 1860
1870 1880 1890 1900 1910 1920
pF1KA0 DMFCNSTHPQVRAQTAELFAKMTADKLIGPKVRITLMKFLPSVFMDAMRDNPEAAVHIFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DMFCNSTHPQVRAQTAELFAKMTADKLIGPKVRITLMKFLPSVFMDAMRDNPEAAVHIFE
1870 1880 1890 1900 1910 1920
1930 1940 1950 1960 1970 1980
pF1KA0 GTHENPELIWNDNSRDKVSTTVREMMLEHFKNQQDNPEANWKLPEDFAVVFGEAEGELAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GTHENPELIWNDNSRDKVSTTVREMMLEHFKNQQDNPEANWKLPEDFAVVFGEAEGELAV
1930 1940 1950 1960 1970 1980
1990 2000 2010 2020 2030 2040
pF1KA0 GGVFLRIFIAQPAWVLRKPREFLIALLEKLTELLEKNNPHGETLETLTMATVCLFSAQPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GGVFLRIFIAQPAWVLRKPREFLIALLEKLTELLEKNNPHGETLETLTMATVCLFSAQPQ
1990 2000 2010 2020 2030 2040
2050 2060 2070 2080 2090 2100
pF1KA0 LADQVPPLGHLPKVIQAMNHRNNAIPKSAIRVIHALSENELCVRAMASLETIGPLMNGMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LADQVPPLGHLPKVIQAMNHRNNAIPKSAIRVIHALSENELCVRAMASLETIGPLMNGMK
2050 2060 2070 2080 2090 2100
2110 2120 2130 2140 2150 2160
pF1KA0 KRADTVGLACEAINRMFQKEQSELVAQALKADLVPYLLKLLEGIGLENLDSPAATKAQIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KRADTVGLACEAINRMFQKEQSELVAQALKADLVPYLLKLLEGIGLENLDSPAATKAQIV
2110 2120 2130 2140 2150 2160
2170 2180 2190 2200 2210 2220
pF1KA0 KALKAMTRSLQYGEQVNEILCRSSVWSAFKDQKHDLFISESQTAGYLTGPGVAGYLTAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KALKAMTRSLQYGEQVNEILCRSSVWSAFKDQKHDLFISESQTAGYLTGPGVAGYLTAGT
2170 2180 2190 2200 2210 2220
2230 2240
pF1KA0 STSVMSNLPPPVDHEAGDLGYQT
:::::::::::::::::::::::
CCDS33 STSVMSNLPPPVDHEAGDLGYQT
2230 2240
2243 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 21:08:33 2016 done: Sat Nov 5 21:08:34 2016
Total Scan time: 6.170 Total Display time: 0.250
Function used was FASTA [36.3.4 Apr, 2011]