FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0675, 1208 aa
  1>>>pF1KA0675 1208 - 1208 aa - 1208 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4997+/- 0.001; mu= 10.0953+/- 0.061
 mean_var=215.4977+/-43.546, 0's: 0 Z-trim(111.8): 71  B-trim: 109 in 2/50
 Lambda= 0.087368
 statistics sampled from 12594 (12661) to 12594 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.389), width:  16
 Scan time:  5.500

The best scores are:                                      opt bits E(32554)
CCDS2952.1 DZIP3 gene_id:9666|Hs108|chr3           (1208) 8093 1033.9       0


>>CCDS2952.1 DZIP3 gene_id:9666|Hs108|chr3                (1208 aa)
 initn: 8093 init1: 8093 opt: 8093  Z-score: 5522.4  bits: 1033.9 E(32554):    0
Smith-Waterman score: 8093; 100.0% identity (100.0% similar) in 1208 aa overlap (1-1208:1-1208)

               10        20        30        40        50        60
pF1KA0 MDSLPDEFFVRHPAVEDQRKEETENKLEKSSGQLNKQENDIPTDLVPVNLLLEVKKLLNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MDSLPDEFFVRHPAVEDQRKEETENKLEKSSGQLNKQENDIPTDLVPVNLLLEVKKLLNA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 INTLPKGVVPHIKKFLQEDFSFQTMQREVAANSQNGEEIVPALTLRFLITQLEAALRNIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 INTLPKGVVPHIKKFLQEDFSFQTMQREVAANSQNGEEIVPALTLRFLITQLEAALRNIQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 AGNYTAHQINIGYYLTLLFLYGVALTERGKKEDYTEAENKFLVMKMMIQENEICENFMSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 AGNYTAHQINIGYYLTLLFLYGVALTERGKKEDYTEAENKFLVMKMMIQENEICENFMSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VYFGRGLLRCAQKRYNGGLLEFHKSLQEIGDKNDHWFDIDPTEDEDLPTTFKDLLNNFIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 VYFGRGLLRCAQKRYNGGLLEFHKSLQEIGDKNDHWFDIDPTEDEDLPTTFKDLLNNFIK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 TTESNIMKQTICSYLDCERSCEADILKNTSYKGFFQLMCSKSCCVYFHKICWKKFKNLKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 TTESNIMKQTICSYLDCERSCEADILKNTSYKGFFQLMCSKSCCVYFHKICWKKFKNLKY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 PGENDQSFSGKKCLKEGCTGDMVRMLQCDVPGIVKILFEVVRKDEYITIENLGASYRKLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 PGENDQSFSGKKCLKEGCTGDMVRMLQCDVPGIVKILFEVVRKDEYITIENLGASYRKLI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 SLKITDTDIRPKISLKFNTKDEMPIFKLDYNYFYHLLHIIIISGTDIVRQIFDEAMPPPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 SLKITDTDIRPKISLKFNTKDEMPIFKLDYNYFYHLLHIIIISGTDIVRQIFDEAMPPPL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 LKKELLIHKNVLESYYNHLWTNHPLGGSWHLLYPPNKELPQSKQFDLCLLLALIKHLNVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LKKELLIHKNVLESYYNHLWTNHPLGGSWHLLYPPNKELPQSKQFDLCLLLALIKHLNVF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 PAPKKGWNMEPPSSDISKSADILRLCKYRDILLSEILMNGLTESQFNSIWKKVSDILLRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 PAPKKGWNMEPPSSDISKSADILRLCKYRDILLSEILMNGLTESQFNSIWKKVSDILLRL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 GMMQEDIDKVKENPIENISLDYHQLSVYLGIPVPEIIQRMLSCYQQGIALQSITGSQRIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 GMMQEDIDKVKENPIENISLDYHQLSVYLGIPVPEIIQRMLSCYQQGIALQSITGSQRIE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 IEELQNEEEELSPPLMEYNINVKSHPEIQFAEINKDGTSIPSESSTESLKDLQEVKSKQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 IEELQNEEEELSPPLMEYNINVKSHPEIQFAEINKDGTSIPSESSTESLKDLQEVKSKQR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 KKKKTKNKKNKDSKEDQVPYVVEKEEQLRKEQANPHSVSRLIKDDASDVQEDSAMEDKFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 KKKKTKNKKNKDSKEDQVPYVVEKEEQLRKEQANPHSVSRLIKDDASDVQEDSAMEDKFY
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 SLDELHILDMIEQGSAGKVTTDYGETEKERLARQRQLYKLHYQCEDFKRQLRTVTFRWQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 SLDELHILDMIEQGSAGKVTTDYGETEKERLARQRQLYKLHYQCEDFKRQLRTVTFRWQE
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 NQMQIKKKDKIIASLNQQVAFGINKVSKLQRQIHAKDNEIKNLKEQLSMKRSQWEMEKHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 NQMQIKKKDKIIASLNQQVAFGINKVSKLQRQIHAKDNEIKNLKEQLSMKRSQWEMEKHN
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 LESTMKTYVSKLNAETSRALTAEVYFLQCRRDFGLLHLEQTEKECLNQLARVTHMAASNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LESTMKTYVSKLNAETSRALTAEVYFLQCRRDFGLLHLEQTEKECLNQLARVTHMAASNL
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 ESLQLKAAVDSWNAIVADVRNKIAFLRTQYNEQINKVKQGFALSTLPPVQLPPPPPSPEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ESLQLKAAVDSWNAIVADVRNKIAFLRTQYNEQINKVKQGFALSTLPPVQLPPPPPSPEI
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 LMQQFLGRPLVKESFFRPILTVPQMPAVCPGVVSATGQPRAPLMTGIAWALPAPVGDAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LMQQFLGRPLVKESFFRPILTVPQMPAVCPGVVSATGQPRAPLMTGIAWALPAPVGDAVP
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 PSAGLRSDPSIMNWERITDRLKTAFPQQTRKELTDFLRKLKDAYGKSLSELTFDEIVCKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 PSAGLRSDPSIMNWERITDRLKTAFPQQTRKELTDFLRKLKDAYGKSLSELTFDEIVCKI
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA0 SQFIDPKKSQSQGKSVSNVNCVSPSHSPSQPDAAQPPKPAWRPLTSQGPATWEGASNPDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 SQFIDPKKSQSQGKSVSNVNCVSPSHSPSQPDAAQPPKPAWRPLTSQGPATWEGASNPDE
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA0 EEEEEEPCVICHENLSPENLSVLPCAHKFHAQCIRPWLMQQGTCPTCRLHVLLPEEFPGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 EEEEEEPCVICHENLSPENLSVLPCAHKFHAQCIRPWLMQQGTCPTCRLHVLLPEEFPGH
             1150      1160      1170      1180      1190      1200

               
pF1KA0 PSRQLPKI
       ::::::::
CCDS29 PSRQLPKI
               




1208 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:55:33 2016 done: Fri Nov  4 00:55:34 2016
 Total Scan time:  5.500 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]