Result of FASTA (ccds) for
pF1KA0597
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0597, 910 aa
1>>>pF1KA0597 910 - 910 aa - 910 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5384+/-0.00101; mu= 15.9611+/- 0.061
mean_var=123.4209+/-24.502, 0's: 0 Z-trim(108.8): 30 B-trim: 3 in 1/49
Lambda= 0.115446
statistics sampled from 10418 (10439) to 10418 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.321), width: 16
Scan time: 4.610
The best scores are: opt bits E(32554)
CCDS34135.1 MARCH6 gene_id:10299|Hs108|chr5 ( 910) 6182 1041.7 0
CCDS59487.1 MARCH6 gene_id:10299|Hs108|chr5 ( 862) 5380 908.1 0
CCDS59488.1 MARCH6 gene_id:10299|Hs108|chr5 ( 805) 5369 906.2 0
>>CCDS34135.1 MARCH6 gene_id:10299|Hs108|chr5 (910 aa)
initn: 6182 init1: 6182 opt: 6182 Z-score: 5569.0 bits: 1041.7 E(32554): 0
Smith-Waterman score: 6182; 100.0% identity (100.0% similar) in 910 aa overlap (1-910:1-910)
10 20 30 40 50 60
pF1KA0 MDTAEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MDTAEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 FTPIYSPDMPSRLPIQDIFAGLVTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FTPIYSPDMPSRLPIQDIFAGLVTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLFT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 GSVSSLLTLPLDMLSTENLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GSVSSLLTLPLDMLSTENLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 PPFNAAGHHQNEAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PPFNAAGHHQNEAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEED
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 DAGVEDAADANNGAQDDMNWNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DAGVEDAADANNGAQDDMNWNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 ILVFAFCPYHIGHFSLVGLGFEEHVQASHFEGLITTIVGYILLAITLIICHGLATLVKFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ILVFAFCPYHIGHFSLVGLGFEEHVQASHFEGLITTIVGYILLAITLIICHGLATLVKFH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 RSRRLLGVCYIVVKVSLLVVVEIGVFPLICGWWLDICSLEMFDATLKDRELSFQSAPGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RSRRLLGVCYIVVKVSLLVVVEIGVFPLICGWWLDICSLEMFDATLKDRELSFQSAPGTT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 MFLHWLVGMVYVFYFASFILLLREVLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MFLHWLVGMVYVFYFASFILLLREVLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 ILSVIVFGSIVLLMLWLPIRIIKSVLPNFLPYNVMLYSDAPVSELSLELLLLQVVLPALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ILSVIVFGSIVLLMLWLPIRIIKSVLPNFLPYNVMLYSDAPVSELSLELLLLQVVLPALL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 EQGHTRQWLKGLVRAWTVTAGYLLDLHSYLLGDQEENENSANQQVNNNQHARNNNAIPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EQGHTRQWLKGLVRAWTVTAGYLLDLHSYLLGDQEENENSANQQVNNNQHARNNNAIPVV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 GEGLHAAHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLPVFAGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GEGLHAAHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLPVFAGR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 WLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVMVAWMPQGRRVIFQKVKEWSLMIMKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 WLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVMVAWMPQGRRVIFQKVKEWSLMIMKT
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 LIVAVLLAGVVPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LIVAVLLAGVVPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMG
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 PQWWLKTVIEQVYANGIRNIDLHYIVRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PQWWLKTVIEQVYANGIRNIDLHYIVRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAE
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 MQNLVHRRIYPFLLMVVVLMAILSFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGKQGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MQNLVHRRIYPFLLMVVVLMAILSFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGKQGS
850 860 870 880 890 900
910
pF1KA0 SPPPPQSSQE
::::::::::
CCDS34 SPPPPQSSQE
910
>>CCDS59487.1 MARCH6 gene_id:10299|Hs108|chr5 (862 aa)
initn: 5373 init1: 5373 opt: 5380 Z-score: 4847.4 bits: 908.1 E(32554): 0
Smith-Waterman score: 5736; 94.6% identity (94.6% similar) in 910 aa overlap (1-910:1-862)
10 20 30 40 50 60
pF1KA0 MDTAEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MDTAEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 FTPIYSPDMPSRLPIQDIFAGLVTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLFT
::: ::::::::
CCDS59 FTP------------------------------------------------SRIYKCLFT
70
130 140 150 160 170 180
pF1KA0 GSVSSLLTLPLDMLSTENLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GSVSSLLTLPLDMLSTENLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAA
80 90 100 110 120 130
190 200 210 220 230 240
pF1KA0 PPFNAAGHHQNEAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PPFNAAGHHQNEAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEED
140 150 160 170 180 190
250 260 270 280 290 300
pF1KA0 DAGVEDAADANNGAQDDMNWNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DAGVEDAADANNGAQDDMNWNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLF
200 210 220 230 240 250
310 320 330 340 350 360
pF1KA0 ILVFAFCPYHIGHFSLVGLGFEEHVQASHFEGLITTIVGYILLAITLIICHGLATLVKFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ILVFAFCPYHIGHFSLVGLGFEEHVQASHFEGLITTIVGYILLAITLIICHGLATLVKFH
260 270 280 290 300 310
370 380 390 400 410 420
pF1KA0 RSRRLLGVCYIVVKVSLLVVVEIGVFPLICGWWLDICSLEMFDATLKDRELSFQSAPGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RSRRLLGVCYIVVKVSLLVVVEIGVFPLICGWWLDICSLEMFDATLKDRELSFQSAPGTT
320 330 340 350 360 370
430 440 450 460 470 480
pF1KA0 MFLHWLVGMVYVFYFASFILLLREVLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MFLHWLVGMVYVFYFASFILLLREVLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRF
380 390 400 410 420 430
490 500 510 520 530 540
pF1KA0 ILSVIVFGSIVLLMLWLPIRIIKSVLPNFLPYNVMLYSDAPVSELSLELLLLQVVLPALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ILSVIVFGSIVLLMLWLPIRIIKSVLPNFLPYNVMLYSDAPVSELSLELLLLQVVLPALL
440 450 460 470 480 490
550 560 570 580 590 600
pF1KA0 EQGHTRQWLKGLVRAWTVTAGYLLDLHSYLLGDQEENENSANQQVNNNQHARNNNAIPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EQGHTRQWLKGLVRAWTVTAGYLLDLHSYLLGDQEENENSANQQVNNNQHARNNNAIPVV
500 510 520 530 540 550
610 620 630 640 650 660
pF1KA0 GEGLHAAHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLPVFAGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GEGLHAAHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLPVFAGR
560 570 580 590 600 610
670 680 690 700 710 720
pF1KA0 WLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVMVAWMPQGRRVIFQKVKEWSLMIMKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVMVAWMPQGRRVIFQKVKEWSLMIMKT
620 630 640 650 660 670
730 740 750 760 770 780
pF1KA0 LIVAVLLAGVVPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LIVAVLLAGVVPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMG
680 690 700 710 720 730
790 800 810 820 830 840
pF1KA0 PQWWLKTVIEQVYANGIRNIDLHYIVRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PQWWLKTVIEQVYANGIRNIDLHYIVRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAE
740 750 760 770 780 790
850 860 870 880 890 900
pF1KA0 MQNLVHRRIYPFLLMVVVLMAILSFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGKQGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MQNLVHRRIYPFLLMVVVLMAILSFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGKQGS
800 810 820 830 840 850
910
pF1KA0 SPPPPQSSQE
::::::::::
CCDS59 SPPPPQSSQE
860
>>CCDS59488.1 MARCH6 gene_id:10299|Hs108|chr5 (805 aa)
initn: 5369 init1: 5369 opt: 5369 Z-score: 4837.9 bits: 906.2 E(32554): 0
Smith-Waterman score: 5369; 100.0% identity (100.0% similar) in 798 aa overlap (113-910:8-805)
90 100 110 120 130 140
pF1KA0 VTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLFTGSVSSLLTLPLDMLSTENLLAD
::::::::::::::::::::::::::::::
CCDS59 MDTAEEGRIYKCLFTGSVSSLLTLPLDMLSTENLLAD
10 20 30
150 160 170 180 190 200
pF1KA0 CLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAAPPFNAAGHHQNEAPAGGNGAEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 CLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAAPPFNAAGHHQNEAPAGGNGAEN
40 50 60 70 80 90
210 220 230 240 250 260
pF1KA0 VAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEEDDAGVEDAADANNGAQDDMNWNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEEDDAGVEDAADANNGAQDDMNWNA
100 110 120 130 140 150
270 280 290 300 310 320
pF1KA0 LEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLFILVFAFCPYHIGHFSLVGLGFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLFILVFAFCPYHIGHFSLVGLGFE
160 170 180 190 200 210
330 340 350 360 370 380
pF1KA0 EHVQASHFEGLITTIVGYILLAITLIICHGLATLVKFHRSRRLLGVCYIVVKVSLLVVVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EHVQASHFEGLITTIVGYILLAITLIICHGLATLVKFHRSRRLLGVCYIVVKVSLLVVVE
220 230 240 250 260 270
390 400 410 420 430 440
pF1KA0 IGVFPLICGWWLDICSLEMFDATLKDRELSFQSAPGTTMFLHWLVGMVYVFYFASFILLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IGVFPLICGWWLDICSLEMFDATLKDRELSFQSAPGTTMFLHWLVGMVYVFYFASFILLL
280 290 300 310 320 330
450 460 470 480 490 500
pF1KA0 REVLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRFILSVIVFGSIVLLMLWLPIRII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 REVLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRFILSVIVFGSIVLLMLWLPIRII
340 350 360 370 380 390
510 520 530 540 550 560
pF1KA0 KSVLPNFLPYNVMLYSDAPVSELSLELLLLQVVLPALLEQGHTRQWLKGLVRAWTVTAGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KSVLPNFLPYNVMLYSDAPVSELSLELLLLQVVLPALLEQGHTRQWLKGLVRAWTVTAGY
400 410 420 430 440 450
570 580 590 600 610 620
pF1KA0 LLDLHSYLLGDQEENENSANQQVNNNQHARNNNAIPVVGEGLHAAHQAILQQGGPVGFQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LLDLHSYLLGDQEENENSANQQVNNNQHARNNNAIPVVGEGLHAAHQAILQQGGPVGFQP
460 470 480 490 500 510
630 640 650 660 670 680
pF1KA0 YRRPLNFPLRIFLLIVFMCITLLIASLICLTLPVFAGRWLMSFWTGTAKIHELYTAACGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 YRRPLNFPLRIFLLIVFMCITLLIASLICLTLPVFAGRWLMSFWTGTAKIHELYTAACGL
520 530 540 550 560 570
690 700 710 720 730 740
pF1KA0 YVCWLTIRAVTVMVAWMPQGRRVIFQKVKEWSLMIMKTLIVAVLLAGVVPLLLGLLFELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 YVCWLTIRAVTVMVAWMPQGRRVIFQKVKEWSLMIMKTLIVAVLLAGVVPLLLGLLFELV
580 590 600 610 620 630
750 760 770 780 790 800
pF1KA0 IVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMGPQWWLKTVIEQVYANGIRNIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMGPQWWLKTVIEQVYANGIRNIDL
640 650 660 670 680 690
810 820 830 840 850 860
pF1KA0 HYIVRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAEMQNLVHRRIYPFLLMVVVLMAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 HYIVRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAEMQNLVHRRIYPFLLMVVVLMAI
700 710 720 730 740 750
870 880 890 900 910
pF1KA0 LSFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGKQGSSPPPPQSSQE
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LSFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGKQGSSPPPPQSSQE
760 770 780 790 800
910 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:50:14 2016 done: Thu Nov 3 09:50:14 2016
Total Scan time: 4.610 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]